Rosetta Protocols  2014.35
protocols::hybridization::HybridizeFoldtreeDynamic Member List

This is the complete list of members for protocols::hybridization::HybridizeFoldtreeDynamic, including all inherited members.

add_overlapping_pair_chunks(core::Size const index, utility::vector1< core::Size > &cuts, utility::vector1< std::pair< core::Size, core::Size > > &jumps, std::set< core::Size > &rooted_chunk_indices)protocols::hybridization::HybridizeFoldtreeDynamicprivate
anchor_positions_protocols::hybridization::HybridizeFoldtreeDynamicprivate
anchor_positions_last_protocols::hybridization::HybridizeFoldtreeDynamicprivate
choose_anchor_position(const protocols::loops::Loop &chunk) const protocols::hybridization::HybridizeFoldtreeDynamicprivate
choose_anchors()protocols::hybridization::HybridizeFoldtreeDynamicprivate
chunks_protocols::hybridization::HybridizeFoldtreeDynamicprivate
chunks_last_protocols::hybridization::HybridizeFoldtreeDynamicprivate
core_chunks_protocols::hybridization::HybridizeFoldtreeDynamicprivate
core_chunks_last_protocols::hybridization::HybridizeFoldtreeDynamicprivate
decide_cuts(core::pose::Pose &pose, core::Size n_residues)protocols::hybridization::HybridizeFoldtreeDynamicprivate
get_anchors()protocols::hybridization::HybridizeFoldtreeDynamicinline
get_core_chunk_index_from_position(core::Size const position, core::Size &index)protocols::hybridization::HybridizeFoldtreeDynamicprivate
get_pair_core_chunks(core::Size const chunk_index, utility::vector1< core::Size > &pair_chunks, utility::vector1< std::pair< core::Size, core::Size > > &pair_chunks_pairs)protocols::hybridization::HybridizeFoldtreeDynamicprivate
HybridizeFoldtreeDynamic()protocols::hybridization::HybridizeFoldtreeDynamic
initial_asymm_foldtree_protocols::hybridization::HybridizeFoldtreeDynamicprivate
initialize(core::pose::Pose &pose, protocols::loops::Loops const &core_chunks, utility::vector1< std::pair< core::Size, core::Size > > const &strand_pairs, std::set< core::Size > const &strand_pair_library_positions)protocols::hybridization::HybridizeFoldtreeDynamic
jumps_and_cuts_from_foldtree(core::kinematics::FoldTree &foldtree, utility::vector1< std::pair< core::Size, core::Size > > &jumps, utility::vector1< core::Size > &cuts)protocols::hybridization::HybridizeFoldtreeDynamicprivate
make_complete_chunks(utility::vector1< core::Size > cut_positions, core::Size n_residues)protocols::hybridization::HybridizeFoldtreeDynamicprivate
num_nonvirt_residues_protocols::hybridization::HybridizeFoldtreeDynamicprivate
num_protein_residues_protocols::hybridization::HybridizeFoldtreeDynamicprivate
remove_cut(core::Size const cut, utility::vector1< core::Size > &cuts)protocols::hybridization::HybridizeFoldtreeDynamicprivate
reset(core::pose::Pose &pose)protocols::hybridization::HybridizeFoldtreeDynamic
rooted_chunk_indices_protocols::hybridization::HybridizeFoldtreeDynamicprivate
saved_ft_protocols::hybridization::HybridizeFoldtreeDynamicprivate
saved_n_residue_protocols::hybridization::HybridizeFoldtreeDynamicprivate
set_core_chunks(const protocols::loops::Loops &chunks)protocols::hybridization::HybridizeFoldtreeDynamicprivate
strand_pair_library_positions_protocols::hybridization::HybridizeFoldtreeDynamicprivate
strand_pairs_protocols::hybridization::HybridizeFoldtreeDynamicprivate
template_core_chunk_indices_protocols::hybridization::HybridizeFoldtreeDynamicprivate
update(core::pose::Pose &pose)protocols::hybridization::HybridizeFoldtreeDynamicprivate
virtual_res_protocols::hybridization::HybridizeFoldtreeDynamicprivate