Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions Class Reference

#include <StepWiseMonteCarloOptions.hh>

Public Member Functions

 StepWiseMonteCarloOptions ()
 
 StepWiseMonteCarloOptions (StepWiseMonteCarloOptions const &src)
 copy constructor More...
 
 ~StepWiseMonteCarloOptions ()
 
virtual void show (std::ostream &) const
 Describe this instance to a given output stream. More...
 
virtual void parse_my_tag (utility::tag::TagCOP)
 Initialize from the recursive "tag" structure. More...
 
virtual std::string type () const
 The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery. More...
 
StepWiseMonteCarloOptionsOP clone () const
 clone the options More...
 
StepWiseMonteCarloOptionsoperator= (StepWiseMonteCarloOptions const &src)
 
void initialize_from_command_line ()
 
protocols::stepwise::modeler::options::StepWiseModelerOptionsOP setup_modeler_options () const
 
bool const & verbose_scores () const
 
void set_verbose_scores (bool const &setting)
 
bool const & integration_test_mode () const
 
void set_integration_test_mode (bool const &setting)
 
bool const & force_centroid_interaction () const
 
void set_force_centroid_interaction (bool const &setting)
 
core::Real const & sampler_max_centroid_distance () const
 
void set_sampler_max_centroid_distance (core::Real const &setting)
 
bool const & use_phenix_geo () const
 
void set_use_phenix_geo (bool const &setting)
 
bool const & skip_deletions () const
 
void set_skip_deletions (bool const &setting)
 
bool const & erraser () const
 
void set_erraser (bool const &setting)
 
bool const & allow_internal_hinge_moves () const
 
void set_allow_internal_hinge_moves (bool const &setting)
 
bool const & allow_internal_local_moves () const
 
void set_allow_internal_local_moves (bool const &setting)
 
core::Size const & cycles () const
 
void set_cycles (core::Size const &setting)
 
core::Real const & add_delete_frequency () const
 
void set_add_delete_frequency (core::Real const &setting)
 
core::Real const & intermolecular_frequency () const
 
void set_intermolecular_frequency (core::Real const &setting)
 
core::Real const & minimize_single_res_frequency () const
 
void set_minimize_single_res_frequency (core::Real const &setting)
 
bool const & minimizer_allow_variable_bond_geometry () const
 
void set_minimizer_allow_variable_bond_geometry (bool const &setting)
 
core::Real const & minimizer_vary_bond_geometry_frequency () const
 
void set_minimizer_vary_bond_geometry_frequency (core::Real const &setting)
 
core::Real const & switch_focus_frequency () const
 
void set_switch_focus_frequency (core::Real const &setting)
 
core::Real const & just_min_after_mutation_frequency () const
 
void set_just_min_after_mutation_frequency (core::Real const &setting)
 
core::Real const & temperature () const
 
void set_temperature (core::Real const &setting)
 
utility::vector1< core::Size >
const & 
bulge_res () const
 
void set_bulge_res (utility::vector1< core::Size > const &setting)
 
core::Real const & max_missing_weight () const
 
void set_max_missing_weight (core::Real const &setting)
 
core::Real const & chainbreak_weight () const
 
void set_chainbreak_weight (core::Real const &setting)
 
bool const & allow_skip_bulge () const
 
void set_allow_skip_bulge (bool const &setting)
 
core::Real const & from_scratch_frequency () const
 
void set_from_scratch_frequency (core::Real const &setting)
 
bool const & allow_split_off () const
 
void set_allow_split_off (bool const &setting)
 
bool const & virtual_sugar_keep_base_fixed () const
 
void set_virtual_sugar_keep_base_fixed (bool const &setting)
 
bool const & virtual_sugar_do_minimize () const
 
void set_virtual_sugar_do_minimize (bool const &setting)
 
bool const & make_movie () const
 
void set_make_movie (bool const &setting)
 
bool const & sampler_perform_phosphate_pack () const
 
void set_sampler_perform_phosphate_pack (bool const &setting)
 
bool const & rebuild_bulge_mode () const
 
void set_rebuild_bulge_mode (bool const &setting)
 
bool const & tether_jump () const
 
void set_tether_jump (bool const &setting)
 
bool const & local_redock_only () const
 
void set_local_redock_only (bool const &setting)
 
bool const & skip_coord_constraints () const
 
void set_skip_coord_constraints (bool const &setting)
 
bool const & filter_native_big_bins () const
 
void set_filter_native_big_bins (bool const &setting)
 
bool const & allow_virtual_side_chains () const
 
void set_allow_virtual_side_chains (bool const &setting)
 
Size const & n_sample () const
 
void set_n_sample (Size const &setting)
 
bool const & protein_prepack () const
 
void set_protein_prepack (bool const &setting)
 
bool const & o2prime_legacy_mode () const
 
void set_o2prime_legacy_mode (bool const &setting)
 
- Public Member Functions inherited from protocols::stepwise::options::StepWiseBasicOptions
 StepWiseBasicOptions ()
 
 StepWiseBasicOptions (StepWiseBasicOptions const &src)
 copy constructor More...
 
 ~StepWiseBasicOptions ()
 
StepWiseBasicOptionsOP clone () const
 clone the options More...
 
StepWiseBasicOptionsoperator= (StepWiseBasicOptions const &src)
 
bool const & output_minimized_pose_list () const
 
void set_output_minimized_pose_list (bool const &setting)
 
std::string const & silent_file () const
 
void set_silent_file (std::string const &setting)
 
std::string const & sampler_silent_file () const
 
void set_sampler_silent_file (std::string const &setting)
 
core::Size const & num_pose_minimize () const
 
void set_num_pose_minimize (core::Size const &setting)
 
core::Size const & num_random_samples () const
 
void set_num_random_samples (core::Size const &setting)
 
void set_atr_rep_screen (bool const &setting)
 
bool atr_rep_screen () const
 
void set_rmsd_screen (core::Real const &setting)
 
core::Real rmsd_screen () const
 

Private Attributes

bool verbose_scores_
 
bool integration_test_mode_
 
bool force_centroid_interaction_
 
core::Real sampler_max_centroid_distance_
 
bool use_phenix_geo_
 
bool skip_deletions_
 
bool erraser_
 
bool allow_internal_hinge_moves_
 
bool allow_internal_local_moves_
 
core::Size cycles_
 
core::Real add_delete_frequency_
 
core::Real intermolecular_frequency_
 
core::Real minimize_single_res_frequency_
 
bool minimizer_allow_variable_bond_geometry_
 
core::Real minimizer_vary_bond_geometry_frequency_
 
core::Real switch_focus_frequency_
 
core::Real just_min_after_mutation_frequency_
 
core::Real temperature_
 
utility::vector1< core::Sizebulge_res_
 
core::Real max_missing_weight_
 
core::Real chainbreak_weight_
 
bool allow_skip_bulge_
 
core::Real from_scratch_frequency_
 
bool allow_split_off_
 
bool virtual_sugar_keep_base_fixed_
 
bool virtual_sugar_do_minimize_
 
bool make_movie_
 
bool sampler_perform_phosphate_pack_
 
bool rebuild_bulge_mode_
 
bool tether_jump_
 
bool local_redock_only_
 
bool skip_coord_constraints_
 
bool filter_native_big_bins_
 
bool allow_virtual_side_chains_
 
Size n_sample_
 
bool protein_prepack_
 
bool o2prime_legacy_mode_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::stepwise::options::StepWiseBasicOptions
void initialize_from_command_line ()
 
void initialize_variables ()
 

Constructor & Destructor Documentation

protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::StepWiseMonteCarloOptions ( )
protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::StepWiseMonteCarloOptions ( StepWiseMonteCarloOptions const &  src)

copy constructor

protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::~StepWiseMonteCarloOptions ( )

Member Function Documentation

core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::add_delete_frequency ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_internal_hinge_moves ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_internal_local_moves ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_skip_bulge ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_split_off ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_virtual_side_chains ( ) const
inline

Referenced by setup_modeler_options().

utility::vector1< core::Size > const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::bulge_res ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::chainbreak_weight ( ) const
inline
StepWiseMonteCarloOptionsOP protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::clone ( ) const

clone the options

References StepWiseMonteCarloOptions().

core::Size const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::cycles ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::erraser ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::filter_native_big_bins ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::force_centroid_interaction ( ) const
inline

Referenced by setup_modeler_options().

core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::from_scratch_frequency ( ) const
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::initialize_from_command_line ( )
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::integration_test_mode ( ) const
inline

Referenced by setup_modeler_options().

core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::intermolecular_frequency ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::just_min_after_mutation_frequency ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::local_redock_only ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::make_movie ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::max_missing_weight ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimize_single_res_frequency ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimizer_allow_variable_bond_geometry ( ) const
inline

Referenced by setup_modeler_options().

core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimizer_vary_bond_geometry_frequency ( ) const
inline

Referenced by setup_modeler_options().

Size const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::n_sample ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::o2prime_legacy_mode ( ) const
inline

Referenced by setup_modeler_options().

StepWiseMonteCarloOptions & protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::operator= ( StepWiseMonteCarloOptions const &  src)
virtual void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::parse_my_tag ( utility::tag::TagCOP  )
inlinevirtual

Initialize from the recursive "tag" structure.

Reimplemented from protocols::stepwise::options::StepWiseBasicOptions.

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::protein_prepack ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::rebuild_bulge_mode ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::sampler_max_centroid_distance ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::sampler_perform_phosphate_pack ( ) const
inline

Referenced by setup_modeler_options().

void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_add_delete_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_allow_internal_hinge_moves ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_allow_internal_local_moves ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_allow_skip_bulge ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_allow_split_off ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_allow_virtual_side_chains ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_bulge_res ( utility::vector1< core::Size > const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_chainbreak_weight ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_cycles ( core::Size const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_erraser ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_filter_native_big_bins ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_force_centroid_interaction ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_from_scratch_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_integration_test_mode ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_intermolecular_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_just_min_after_mutation_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_local_redock_only ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_make_movie ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_max_missing_weight ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_minimize_single_res_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_minimizer_allow_variable_bond_geometry ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_minimizer_vary_bond_geometry_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_n_sample ( Size const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_o2prime_legacy_mode ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_protein_prepack ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_rebuild_bulge_mode ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_sampler_max_centroid_distance ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_sampler_perform_phosphate_pack ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_skip_coord_constraints ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_skip_deletions ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_switch_focus_frequency ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_temperature ( core::Real const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_tether_jump ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_use_phenix_geo ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_verbose_scores ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_virtual_sugar_do_minimize ( bool const &  setting)
inline
void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::set_virtual_sugar_keep_base_fixed ( bool const &  setting)
inline
protocols::stepwise::modeler::options::StepWiseModelerOptionsOP protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::setup_modeler_options ( ) const
virtual void protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::show ( std::ostream &  ) const
inlinevirtual

Describe this instance to a given output stream.

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::skip_coord_constraints ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::skip_deletions ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::switch_focus_frequency ( ) const
inline
core::Real const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::temperature ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::tether_jump ( ) const
inline

Referenced by setup_modeler_options().

virtual std::string protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::type ( ) const
inlinevirtual

The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery.

Reimplemented from protocols::stepwise::options::StepWiseBasicOptions.

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::use_phenix_geo ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::verbose_scores ( ) const
inline
bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::virtual_sugar_do_minimize ( ) const
inline

Referenced by setup_modeler_options().

bool const& protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::virtual_sugar_keep_base_fixed ( ) const
inline

Referenced by setup_modeler_options().

Member Data Documentation

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::add_delete_frequency_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_internal_hinge_moves_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_internal_local_moves_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_skip_bulge_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_split_off_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::allow_virtual_side_chains_
private
utility::vector1< core::Size > protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::bulge_res_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::chainbreak_weight_
private

Referenced by operator=().

core::Size protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::cycles_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::erraser_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::filter_native_big_bins_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::force_centroid_interaction_
private
core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::from_scratch_frequency_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::integration_test_mode_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::intermolecular_frequency_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::just_min_after_mutation_frequency_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::local_redock_only_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::make_movie_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::max_missing_weight_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimize_single_res_frequency_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimizer_allow_variable_bond_geometry_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::minimizer_vary_bond_geometry_frequency_
private

Referenced by operator=().

Size protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::n_sample_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::o2prime_legacy_mode_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::protein_prepack_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::rebuild_bulge_mode_
private
core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::sampler_max_centroid_distance_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::sampler_perform_phosphate_pack_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::skip_coord_constraints_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::skip_deletions_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::switch_focus_frequency_
private

Referenced by operator=().

core::Real protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::temperature_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::tether_jump_
private
bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::use_phenix_geo_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::verbose_scores_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::virtual_sugar_do_minimize_
private

Referenced by operator=().

bool protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions::virtual_sugar_keep_base_fixed_
private

Referenced by operator=().


The documentation for this class was generated from the following files: