Rosetta Protocols  2014.35
Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::features::ScreeningFeatures Class Reference

#include <ScreeningFeatures.hh>

Public Member Functions

 ScreeningFeatures ()
 
 ScreeningFeatures (ScreeningFeatures const &src)
 
virtual ~ScreeningFeatures ()
 
std::string type_name () const
 
virtual void write_schema_to_db (utility::sql_database::sessionOP db_session) const
 Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual. More...
 
utility::vector1< std::stringfeatures_reporter_dependencies () const
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
virtual core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &, StructureID struct_id, utility::sql_database::sessionOP db_session)
 collect all the feature data for the pose. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
 FeaturesReporter ()
 
virtual ~FeaturesReporter ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)
 
virtual void delete_record (StructureID, utility::sql_database::sessionOP)
 
void set_relevant_residues_mode (RelevantResiduesMode::T setting)
 
RelevantResiduesMode::T get_relevant_residues_mode () const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const
 

Private Member Functions

std::vector
< utility::json_spirit::Pair
get_desriptor_data () const
 

Private Attributes

std::string chain_
 
utility::vector1< std::stringdescriptors_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 
- Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T relevant_residues_mode_
 

Constructor & Destructor Documentation

protocols::features::ScreeningFeatures::ScreeningFeatures ( )
protocols::features::ScreeningFeatures::ScreeningFeatures ( ScreeningFeatures const &  src)
protocols::features::ScreeningFeatures::~ScreeningFeatures ( )
virtual

Member Function Documentation

utility::vector1< std::string > protocols::features::ScreeningFeatures::features_reporter_dependencies ( ) const
virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

std::vector< utility::json_spirit::Pair > protocols::features::ScreeningFeatures::get_desriptor_data ( ) const
private
void protocols::features::ScreeningFeatures::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap ,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
core::Size protocols::features::ScreeningFeatures::report_features ( core::pose::Pose const &  ,
utility::vector1< bool > const &  ,
StructureID  ,
utility::sql_database::sessionOP   
)
virtual
std::string protocols::features::ScreeningFeatures::type_name ( ) const
virtual
void protocols::features::ScreeningFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
virtual

Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual.

Implements protocols::features::FeaturesReporter.

References basic::database::schema_generator::Schema::add_column(), basic::database::schema_generator::Schema::add_foreign_key(), and basic::database::schema_generator::Schema::write().

Member Data Documentation

std::string protocols::features::ScreeningFeatures::chain_
private

Referenced by parse_my_tag(), and report_features().

utility::vector1<std::string> protocols::features::ScreeningFeatures::descriptors_
private

Referenced by get_desriptor_data(), and parse_my_tag().


The documentation for this class was generated from the following files: