protocols::hotspot_hashing::SearchPatternRotSetOp Class Reference

#include <SearchPatternRotSetOp.hh>

Public Types
typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO	parent

Public Member Functions
	SearchPatternRotSetOp (SearchPatternOP pattern)
	SearchPatternRotSetOp (SearchPatternRotSetOp const &other)
virtual core::pack::rotamer_set::RotamerSetOperationOP	clone () const
virtual utility::vector1 < core::conformation::ResidueCOP >	get_rigid_body_confs (core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::Size residue_index)
	returns candidate alternate RB conformations More...
virtual core::Real	increase_packer_residue_radius (core::pose::Pose const &pose, core::pack::task::PackerTaskCOP, core::Size residue_index)
Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
virtual void	alter_rotamer_set (core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::pack::task::PackerTask const &ptask, core::graph::GraphCOP packer_neighbor_graph, core::pack::rotamer_set::RotamerSet &rotamer_set)
	Adds additional rotamers at each rb conf. More...

Private Attributes
utility::vector1 < core::kinematics::Stub >	search_stubs_

Additional Inherited Members
Static Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
static core::Real	determine_largest_nbr_atom_distance (core::conformation::Residue const &target_res, utility::vector1< core::conformation::ResidueCOP > alternate_confs)
	returns the largest observed distance between the nbr atom in the target res and the nbr atom in any of the candidate rb confs More...
Protected Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
	RigidBodyMoveBaseRSO ()
	RigidBodyMoveBaseRSO (const RigidBodyMoveBaseRSO &other)

Member Typedef Documentation

typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO protocols::hotspot_hashing::SearchPatternRotSetOp::parent

Constructor & Destructor Documentation

protocols::hotspot_hashing::SearchPatternRotSetOp::SearchPatternRotSetOp

(

SearchPatternOP

pattern

)

Referenced by clone().

protocols::hotspot_hashing::SearchPatternRotSetOp::SearchPatternRotSetOp

(

SearchPatternRotSetOp const &

other

)

Member Function Documentation

core::pack::rotamer_set::RotamerSetOperationOP protocols::hotspot_hashing::SearchPatternRotSetOp::clone ( ) const

virtual

Implements core::pack::rotamer_set::RotamerSetOperation.

References SearchPatternRotSetOp().

utility::vector1< core::conformation::ResidueCOP > protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs ( core::pose::Pose const &  pose, core::pack::task::PackerTask const &  ptask, core::Size  residue_index  )

virtual

returns candidate alternate RB conformations

Implements protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

References protocols::hotspot_hashing::StubGenerator::moveFromStubFrame(), protocols::hotspot_hashing::StubGenerator::moveIntoStubFrame(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, protocols::hotspot_hashing::stub_to_points(), and protocols::hotspot_hashing::TR.

core::Real protocols::hotspot_hashing::SearchPatternRotSetOp::increase_packer_residue_radius ( core::pose::Pose const &  pose, core::pack::task::PackerTaskCOP  , core::Size  residue_index  )

virtual

Reimplemented from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

References core::kinematics::Stub::global2local(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, and protocols::hotspot_hashing::TR.

Member Data Documentation

utility::vector1<core::kinematics::Stub> protocols::hotspot_hashing::SearchPatternRotSetOp::search_stubs_

private

Referenced by get_rigid_body_confs(), and increase_packer_residue_radius().

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The documentation for this class was generated from the following files:

• src/protocols/hotspot_hashing/SearchPatternRotSetOp.hh
• src/protocols/hotspot_hashing/SearchPatternRotSetOp.cc