Rosetta Protocols  2014.35
protocols::canonical_sampling::HamiltonianExchange Member List

This is the complete list of members for protocols::canonical_sampling::HamiltonianExchange, including all inherited members.

apply(core::pose::Pose &)protocols::canonical_sampling::HamiltonianExchangeinlinevirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
AsyncMPITemperingBase()protocols::canonical_sampling::AsyncMPITemperingBase
AsyncMPITemperingBase(AsyncMPITemperingBase const &)protocols::canonical_sampling::AsyncMPITemperingBase
bias_energy_protocols::canonical_sampling::HamiltonianExchangeprivate
check_temp_consistency()protocols::canonical_sampling::TemperingBaseprotected
clear()protocols::canonical_sampling::HamiltonianExchangeprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::canonical_sampling::HamiltonianExchangevirtual
coord2key(GridCoord const &coord, GridCoord const &max_coord, Size exclude_dim=0)protocols::canonical_sampling::HamiltonianExchangeprivate
create()protocols::moves::Movervirtual
current_exchange_schedule_protocols::canonical_sampling::HamiltonianExchangeprivate
current_temp() const protocols::canonical_sampling::TemperingBaseinlineprotected
current_temp_protocols::canonical_sampling::TemperingBaseprotected
exchange_grid_protocols::canonical_sampling::HamiltonianExchangeprivate
exchange_grid_dim() const protocols::canonical_sampling::HamiltonianExchangeinlinevirtual
exchange_grid_dimension_protocols::canonical_sampling::HamiltonianExchangeprivate
exchange_schedules_protocols::canonical_sampling::HamiltonianExchangeprivate
ExchangeSchedule typedefprotocols::canonical_sampling::HamiltonianExchangeprivate
Filters_map typedefprotocols::moves::Mover
finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::AsyncMPITemperingBasevirtual
find_exchange_partner(int &partner, bool &is_master)protocols::canonical_sampling::AsyncMPITemperingBaseprotected
finished_simulation(core::Size trials, core::Size ntrials)protocols::canonical_sampling::AsyncMPITemperingBasevirtual
fresh_instance() const protocols::canonical_sampling::HamiltonianExchangevirtual
generate_temp_range(core::Real temp_low, core::Real temp_high, core::Size n_levels, InterpolationType interpolation=linear)protocols::canonical_sampling::TemperingBaseprotected
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::canonical_sampling::HamiltonianExchangevirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
Grid typedefprotocols::canonical_sampling::HamiltonianExchangeprivate
GridCoord typedefprotocols::canonical_sampling::TemperatureController
HamiltonianExchange()protocols::canonical_sampling::HamiltonianExchange
HamiltonianExchange(HamiltonianExchange const &)protocols::canonical_sampling::HamiltonianExchange
hamiltonians_protocols::canonical_sampling::HamiltonianExchangeprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init_from_options()protocols::canonical_sampling::HamiltonianExchangeprotectedvirtual
initialize_from_file(std::string const &filename)protocols::canonical_sampling::HamiltonianExchangeprotectedvirtual
initialize_simulation(core::pose::Pose &pose, MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle)protocols::canonical_sampling::HamiltonianExchangevirtual
initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size level, core::Real temperature, core::Size cycle)protocols::canonical_sampling::HamiltonianExchangevirtual
instance_initialized_protocols::canonical_sampling::TemperingBaseprotected
io_stride_protocols::canonical_sampling::TemperingBaseprotected
job_protocols::canonical_sampling::TemperingBaseprotected
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
level_2_grid_coord(core::Size level) const protocols::canonical_sampling::HamiltonianExchangeinlinevirtual
max_coord_protocols::canonical_sampling::HamiltonianExchangeprivate
monte_carlo() const protocols::canonical_sampling::TemperatureController
monte_carlo()protocols::canonical_sampling::TemperatureControllerprotected
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
n_temp_levels() const protocols::canonical_sampling::TemperingBasevirtual
name()protocols::moves::Moverinlinestatic
next_exchange_level() const protocols::canonical_sampling::HamiltonianExchangeprotectedvirtual
next_exchange_schedule()protocols::canonical_sampling::HamiltonianExchange
nlevels_per_dim(core::Size) const protocols::canonical_sampling::HamiltonianExchangevirtual
observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::TemperingBasevirtual
operator=(HamiltonianExchange const &)protocols::canonical_sampling::HamiltonianExchange
protocols::canonical_sampling::AsyncMPITemperingBase::operator=(AsyncMPITemperingBase const &)protocols::canonical_sampling::AsyncMPITemperingBase
protocols::canonical_sampling::TemperingBase::operator=(Mover const &other)protocols::moves::Mover
options_registered_protocols::canonical_sampling::HamiltonianExchangeprivatestatic
Parent typedefprotocols::canonical_sampling::HamiltonianExchangeprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose)protocols::canonical_sampling::HamiltonianExchangevirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
rank()protocols::canonical_sampling::AsyncMPITemperingBaseinlineprotected
register_options()protocols::canonical_sampling::HamiltonianExchangestatic
reinitialize_for_each_job() const protocols::canonical_sampling::TemperatureControllerinlinevirtual
reinitialize_for_new_input() const protocols::canonical_sampling::TemperatureControllerinlinevirtual
requires_pose()protocols::canonical_sampling::ThermodynamicObserverinlinevirtual
reset_status()protocols::moves::Mover
reset_temp_counter()protocols::canonical_sampling::TemperingBaseinlineprotected
restart_simulation(core::pose::Pose &, MetropolisHastingsMover &, core::Size &, core::Size &, core::Real &)protocols::canonical_sampling::ThermodynamicObserverinlinevirtual
save_state(SerializableState &state)protocols::moves::Movervirtual
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_current_temp(core::Size new_temp)protocols::canonical_sampling::TemperingBaseprotectedvirtual
set_defaults()protocols::canonical_sampling::HamiltonianExchangeprotected
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_monte_carlo(protocols::moves::MonteCarloOP monte_carlo)protocols::canonical_sampling::HamiltonianExchangevirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_temperatures(utility::vector1< core::Real > const &)protocols::canonical_sampling::TemperingBaseprotected
set_type(std::string const &setting)protocols::moves::Moverinline
setup_exchange_schedule()protocols::canonical_sampling::HamiltonianExchangeprivate
show(std::ostream &) const protocols::canonical_sampling::HamiltonianExchangevirtual
stats_file() const protocols::canonical_sampling::TemperingBaseinlineprotected
stats_file_protocols::canonical_sampling::TemperingBaseprotected
stats_line_output() const protocols::canonical_sampling::TemperingBaseinlineprotected
stats_line_output_protocols::canonical_sampling::TemperingBaseprotected
stats_silent_output() const protocols::canonical_sampling::TemperingBaseinlineprotected
stats_silent_output_protocols::canonical_sampling::TemperingBaseprotected
Strings typedefprotocols::moves::Mover
successfully_initialized_protocols::canonical_sampling::HamiltonianExchangeprivate
TagCOP typedefprotocols::moves::Mover
temp_trial_count_protocols::canonical_sampling::TemperingBaseprotected
temperature() const protocols::canonical_sampling::TemperingBasevirtual
temperature(core::Size level) const protocols::canonical_sampling::TemperingBasevirtual
temperature_level() const protocols::canonical_sampling::TemperingBaseinlinevirtual
temperature_move(core::Real score)protocols::canonical_sampling::HamiltonianExchangevirtual
temperature_move(core::pose::Pose &pose)protocols::canonical_sampling::HamiltonianExchangevirtual
temperature_stride_protocols::canonical_sampling::TemperingBaseprotected
TemperatureController()protocols::canonical_sampling::TemperatureController
TemperatureController(TemperatureController const &)protocols::canonical_sampling::TemperatureController
temperatures_protocols::canonical_sampling::TemperingBaseprotected
TemperingBase()protocols::canonical_sampling::TemperingBase
TemperingBase(TemperingBase const &)protocols::canonical_sampling::TemperingBase
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
ThermodynamicObserver()protocols::canonical_sampling::ThermodynamicObserver
time_for_temp_move()protocols::canonical_sampling::AsyncMPITemperingBaseprotectedvirtual
trial_counter()protocols::canonical_sampling::TemperingBaseinlineprotected
trial_counter_protocols::canonical_sampling::TemperingBaseprotected
trust_current_temp_protocols::canonical_sampling::TemperingBaseprotected
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
write_to_file(std::string const &file_in, std::string const &output_name, utility::vector1< core::Real > const &wcounts)protocols::canonical_sampling::TemperingBaseprotectedvirtual
~AsyncMPITemperingBase()protocols::canonical_sampling::AsyncMPITemperingBasevirtual
~HamiltonianExchange()protocols::canonical_sampling::HamiltonianExchange
~Mover()protocols::moves::Movervirtual
~ThermodynamicObserver()protocols::canonical_sampling::ThermodynamicObservervirtual