| apply(core::pose::Pose &) | protocols::canonical_sampling::HamiltonianExchange | inlinevirtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| AsyncMPITemperingBase() | protocols::canonical_sampling::AsyncMPITemperingBase | |
| AsyncMPITemperingBase(AsyncMPITemperingBase const &) | protocols::canonical_sampling::AsyncMPITemperingBase | |
| bias_energy_ | protocols::canonical_sampling::HamiltonianExchange | private |
| check_temp_consistency() | protocols::canonical_sampling::TemperingBase | protected |
| clear() | protocols::canonical_sampling::HamiltonianExchange | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::canonical_sampling::HamiltonianExchange | virtual |
| coord2key(GridCoord const &coord, GridCoord const &max_coord, Size exclude_dim=0) | protocols::canonical_sampling::HamiltonianExchange | private |
| create() | protocols::moves::Mover | virtual |
| current_exchange_schedule_ | protocols::canonical_sampling::HamiltonianExchange | private |
| current_temp() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| current_temp_ | protocols::canonical_sampling::TemperingBase | protected |
| exchange_grid_ | protocols::canonical_sampling::HamiltonianExchange | private |
| exchange_grid_dim() const | protocols::canonical_sampling::HamiltonianExchange | inlinevirtual |
| exchange_grid_dimension_ | protocols::canonical_sampling::HamiltonianExchange | private |
| exchange_schedules_ | protocols::canonical_sampling::HamiltonianExchange | private |
| ExchangeSchedule typedef | protocols::canonical_sampling::HamiltonianExchange | private |
| Filters_map typedef | protocols::moves::Mover | |
| finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::AsyncMPITemperingBase | virtual |
| find_exchange_partner(int &partner, bool &is_master) | protocols::canonical_sampling::AsyncMPITemperingBase | protected |
| finished_simulation(core::Size trials, core::Size ntrials) | protocols::canonical_sampling::AsyncMPITemperingBase | virtual |
| fresh_instance() const | protocols::canonical_sampling::HamiltonianExchange | virtual |
| generate_temp_range(core::Real temp_low, core::Real temp_high, core::Size n_levels, InterpolationType interpolation=linear) | protocols::canonical_sampling::TemperingBase | protected |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::canonical_sampling::HamiltonianExchange | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| Grid typedef | protocols::canonical_sampling::HamiltonianExchange | private |
| GridCoord typedef | protocols::canonical_sampling::TemperatureController | |
| HamiltonianExchange() | protocols::canonical_sampling::HamiltonianExchange | |
| HamiltonianExchange(HamiltonianExchange const &) | protocols::canonical_sampling::HamiltonianExchange | |
| hamiltonians_ | protocols::canonical_sampling::HamiltonianExchange | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_from_options() | protocols::canonical_sampling::HamiltonianExchange | protectedvirtual |
| initialize_from_file(std::string const &filename) | protocols::canonical_sampling::HamiltonianExchange | protectedvirtual |
| initialize_simulation(core::pose::Pose &pose, MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size level, core::Real temperature, core::Size cycle) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| instance_initialized_ | protocols::canonical_sampling::TemperingBase | protected |
| io_stride_ | protocols::canonical_sampling::TemperingBase | protected |
| job_ | protocols::canonical_sampling::TemperingBase | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| level_2_grid_coord(core::Size level) const | protocols::canonical_sampling::HamiltonianExchange | inlinevirtual |
| max_coord_ | protocols::canonical_sampling::HamiltonianExchange | private |
| monte_carlo() const | protocols::canonical_sampling::TemperatureController | |
| monte_carlo() | protocols::canonical_sampling::TemperatureController | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| n_temp_levels() const | protocols::canonical_sampling::TemperingBase | virtual |
| name() | protocols::moves::Mover | inlinestatic |
| next_exchange_level() const | protocols::canonical_sampling::HamiltonianExchange | protectedvirtual |
| next_exchange_schedule() | protocols::canonical_sampling::HamiltonianExchange | |
| nlevels_per_dim(core::Size) const | protocols::canonical_sampling::HamiltonianExchange | virtual |
| observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::TemperingBase | virtual |
| operator=(HamiltonianExchange const &) | protocols::canonical_sampling::HamiltonianExchange | |
| protocols::canonical_sampling::AsyncMPITemperingBase::operator=(AsyncMPITemperingBase const &) | protocols::canonical_sampling::AsyncMPITemperingBase | |
| protocols::canonical_sampling::TemperingBase::operator=(Mover const &other) | protocols::moves::Mover | |
| options_registered_ | protocols::canonical_sampling::HamiltonianExchange | privatestatic |
| Parent typedef | protocols::canonical_sampling::HamiltonianExchange | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| rank() | protocols::canonical_sampling::AsyncMPITemperingBase | inlineprotected |
| register_options() | protocols::canonical_sampling::HamiltonianExchange | static |
| reinitialize_for_each_job() const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
| reinitialize_for_new_input() const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
| requires_pose() | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| reset_status() | protocols::moves::Mover | |
| reset_temp_counter() | protocols::canonical_sampling::TemperingBase | inlineprotected |
| restart_simulation(core::pose::Pose &, MetropolisHastingsMover &, core::Size &, core::Size &, core::Real &) | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_current_temp(core::Size new_temp) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
| set_defaults() | protocols::canonical_sampling::HamiltonianExchange | protected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_monte_carlo(protocols::moves::MonteCarloOP monte_carlo) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_temperatures(utility::vector1< core::Real > const &) | protocols::canonical_sampling::TemperingBase | protected |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_exchange_schedule() | protocols::canonical_sampling::HamiltonianExchange | private |
| show(std::ostream &) const | protocols::canonical_sampling::HamiltonianExchange | virtual |
| stats_file() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| stats_file_ | protocols::canonical_sampling::TemperingBase | protected |
| stats_line_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| stats_line_output_ | protocols::canonical_sampling::TemperingBase | protected |
| stats_silent_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| stats_silent_output_ | protocols::canonical_sampling::TemperingBase | protected |
| Strings typedef | protocols::moves::Mover | |
| successfully_initialized_ | protocols::canonical_sampling::HamiltonianExchange | private |
| TagCOP typedef | protocols::moves::Mover | |
| temp_trial_count_ | protocols::canonical_sampling::TemperingBase | protected |
| temperature() const | protocols::canonical_sampling::TemperingBase | virtual |
| temperature(core::Size level) const | protocols::canonical_sampling::TemperingBase | virtual |
| temperature_level() const | protocols::canonical_sampling::TemperingBase | inlinevirtual |
| temperature_move(core::Real score) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| temperature_move(core::pose::Pose &pose) | protocols::canonical_sampling::HamiltonianExchange | virtual |
| temperature_stride_ | protocols::canonical_sampling::TemperingBase | protected |
| TemperatureController() | protocols::canonical_sampling::TemperatureController | |
| TemperatureController(TemperatureController const &) | protocols::canonical_sampling::TemperatureController | |
| temperatures_ | protocols::canonical_sampling::TemperingBase | protected |
| TemperingBase() | protocols::canonical_sampling::TemperingBase | |
| TemperingBase(TemperingBase const &) | protocols::canonical_sampling::TemperingBase | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | |
| time_for_temp_move() | protocols::canonical_sampling::AsyncMPITemperingBase | protectedvirtual |
| trial_counter() | protocols::canonical_sampling::TemperingBase | inlineprotected |
| trial_counter_ | protocols::canonical_sampling::TemperingBase | protected |
| trust_current_temp_ | protocols::canonical_sampling::TemperingBase | protected |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| write_to_file(std::string const &file_in, std::string const &output_name, utility::vector1< core::Real > const &wcounts) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
| ~AsyncMPITemperingBase() | protocols::canonical_sampling::AsyncMPITemperingBase | virtual |
| ~HamiltonianExchange() | protocols::canonical_sampling::HamiltonianExchange | |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | virtual |
1.8.7