protocols::toolbox::task_operations::RestrictToLoops Class Reference

#include <RestrictToLoops.hh>

Public Types
typedef core::pack::task::operation::TaskOperation	parent

Public Member Functions
	RestrictToLoops ()
	Default constructor. More...
	RestrictToLoops (RestrictToLoops const &src)
	Copy constructor. More...
virtual	~RestrictToLoops ()
	Default destructor. More...
RestrictToLoops &	operator= (RestrictToLoops const &rhs)
	Assignment operator. More...
core::pack::task::operation::TaskOperationOP	clone () const
	Return a deep-copied OP. More...
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &)
	Configure from a RosettaScripts XML tag. More...
void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const
	Apply this operation to the packer task. More...
bool	design_loop () const
	Return true if design is allowed. More...
void	set_design_loop (bool design_loop)
	Specify whether or not design is allowed. More...
loops::LoopsCOP	loops () const
	Return the loops allowed to pack. More...
void	set_loops (loops::LoopsCOP loops)
	Specify the loops that will be allowed to pack. More...
void	set_loops_from_file (std::string loops_file)
	Specify the loops that will be allowed to pack. More...

Protected Member Functions
virtual void	init ()
	Help construct instances of this class. More...
virtual void	copy (RestrictToLoops &lhs, RestrictToLoops const &rhs)
	Help copy instances of this class. More...
void	apply_helper (core::pose::Pose const &pose, core::pack::task::PackerTask &task, bool include_neighbors, core::Real cutoff_distance) const
	Helper function to prevent code duplication in subclasses. More...

Private Attributes
bool	design_loop_
loops::LoopsCOP	loops_

Member Typedef Documentation

typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::RestrictToLoops::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictToLoops::RestrictToLoops

(

)

Default constructor.

References init().

Referenced by clone().

protocols::toolbox::task_operations::RestrictToLoops::RestrictToLoops

(

RestrictToLoops const &

src

)

Copy constructor.

References copy().

protocols::toolbox::task_operations::RestrictToLoops::~RestrictToLoops ( )

virtual

Default destructor.

Member Function Documentation

void protocols::toolbox::task_operations::RestrictToLoops::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

Apply this operation to the packer task.

Implements core::pack::task::operation::TaskOperation.

Reimplemented in protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors.

References apply_helper().

void protocols::toolbox::task_operations::RestrictToLoops::apply_helper ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task, bool  include_neighbors, core::Real  cutoff_distance  ) const

protected

Helper function to prevent code duplication in subclasses.

References core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::PreventRepacking::apply(), design_loop(), core::pack::task::operation::PreventRepacking::include_residue(), core::pack::task::operation::RestrictResidueToRepacking::include_residue(), loops(), core::pose::symmetry::make_residue_mask_symmetric(), protocols::loops::select_loop_residues(), and core::pose::Pose::total_residue().

Referenced by protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::apply(), and apply().

TaskOperationOP protocols::toolbox::task_operations::RestrictToLoops::clone ( ) const

virtual

Return a deep-copied OP.

Implements core::pack::task::operation::TaskOperation.

Reimplemented in protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors.

References RestrictToLoops().

void protocols::toolbox::task_operations::RestrictToLoops::copy ( RestrictToLoops &  lhs, RestrictToLoops const &  rhs  )

protectedvirtual

Help copy instances of this class.

References design_loop_, and loops_.

Referenced by protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init_for_copy(), operator=(), and RestrictToLoops().

bool protocols::toolbox::task_operations::RestrictToLoops::design_loop

(

)

const

Return true if design is allowed.

References design_loop_.

Referenced by apply_helper(), parse_tag(), and set_design_loop().

void protocols::toolbox::task_operations::RestrictToLoops::init ( void  )

protectedvirtual

Help construct instances of this class.

Reimplemented in protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors.

References set_design_loop(), and set_loops().

Referenced by protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init(), and RestrictToLoops().

LoopsCOP protocols::toolbox::task_operations::RestrictToLoops::loops

(

)

const

Return the loops allowed to pack.

References loops_.

Referenced by apply_helper(), and set_loops().

RestrictToLoops & protocols::toolbox::task_operations::RestrictToLoops::operator=

(

RestrictToLoops const &

rhs

)

Assignment operator.

References copy().

Referenced by protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::operator=().

void protocols::toolbox::task_operations::RestrictToLoops::parse_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &
	)

Configure from a RosettaScripts XML tag.

References design_loop(), set_design_loop(), and set_loops_from_file().

Referenced by protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::parse_tag().

void protocols::toolbox::task_operations::RestrictToLoops::set_design_loop

(

bool

design_loop

)

Specify whether or not design is allowed.

References design_loop(), and design_loop_.

Referenced by init(), parse_tag(), and protocols::antibody::design::AntibodySeqDesignMover::setup_task_factory().

void protocols::toolbox::task_operations::RestrictToLoops::set_loops

(

loops::LoopsCOP

loops

)

Specify the loops that will be allowed to pack.

References loops(), and loops_.

Referenced by init(), and protocols::antibody::design::AntibodySeqDesignMover::setup_task_factory().

void protocols::toolbox::task_operations::RestrictToLoops::set_loops_from_file

(

std::string

loops_file

)

Specify the loops that will be allowed to pack.

References loops_.

Referenced by parse_tag().

Member Data Documentation

bool protocols::toolbox::task_operations::RestrictToLoops::design_loop_

private

Referenced by copy(), design_loop(), and set_design_loop().

loops::LoopsCOP protocols::toolbox::task_operations::RestrictToLoops::loops_

private

Referenced by copy(), loops(), set_loops(), and set_loops_from_file().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/RestrictToLoops.hh
• src/protocols/toolbox/task_operations/RestrictToLoops.cc