Rosetta Protocols  2014.35
protocols::simple_moves::ShakeStructureMover Member List

This is the complete list of members for protocols::simple_moves::ShakeStructureMover, including all inherited members.

apply(core::pose::Pose &p)protocols::simple_moves::ShakeStructureMovervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
create()protocols::moves::Movervirtual
create_ensemble(core::pose::Pose &p, core::scoring::ScoreFunction &s)protocols::simple_moves::ShakeStructureMoverprotected
cst_weightprotocols::simple_moves::ShakeStructureMoverprivate
ensemble_ca_rmsdprotocols::simple_moves::ShakeStructureMoverprivate
ensemble_ca_rmsd_toleranceprotocols::simple_moves::ShakeStructureMoverprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_ensemble_ca_rmsd()protocols::simple_moves::ShakeStructureMover
get_ensemble_diversity()protocols::simple_moves::ShakeStructureMover
get_harmonic_ca_cst_std_dev()protocols::simple_moves::ShakeStructureMover
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_mc_temperature()protocols::simple_moves::ShakeStructureMover
get_min_cst()protocols::simple_moves::ShakeStructureMover
get_min_scorefunction()protocols::simple_moves::ShakeStructureMover
get_minimize_with_cst()protocols::simple_moves::ShakeStructureMover
get_name() const protocols::simple_moves::ShakeStructureMovervirtual
get_native_pose() const protocols::moves::Mover
get_nrounds()protocols::simple_moves::ShakeStructureMover
get_ramp_fa_rep()protocols::simple_moves::ShakeStructureMover
get_rmsd_target_tolerance()protocols::simple_moves::ShakeStructureMover
get_sc_min()protocols::simple_moves::ShakeStructureMover
get_scorefunction()protocols::simple_moves::ShakeStructureMover
get_scorefunction_initialized()protocols::simple_moves::ShakeStructureMover
get_skip_low_temp_phase()protocols::simple_moves::ShakeStructureMover
get_testing_phase()protocols::simple_moves::ShakeStructureMover
get_type() const protocols::moves::Moverinline
harmonic_ca_cst_std_devprotocols::simple_moves::ShakeStructureMoverprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
is_properly_initializedprotocols::simple_moves::ShakeStructureMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
mc_tempprotocols::simple_moves::ShakeStructureMoverprivate
min_cstprotocols::simple_moves::ShakeStructureMoverprivate
min_scorefxnprotocols::simple_moves::ShakeStructureMoverprivate
minimize_with_constraints(core::pose::Pose &p, core::scoring::ScoreFunction &s)protocols::simple_moves::ShakeStructureMoverprotectedvirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
nroundsprotocols::simple_moves::ShakeStructureMoverprivate
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
ramp_fa_repprotocols::simple_moves::ShakeStructureMoverprivate
reduce_fa_rep(float fraction_fa_rep, core::scoring::ScoreFunction &s)protocols::simple_moves::ShakeStructureMoverprotected
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
run_mc(core::pose::Pose &p, core::scoring::ScoreFunction &s, core::Real temperature)protocols::simple_moves::ShakeStructureMoverprotectedvirtual
save_state(SerializableState &state)protocols::moves::Movervirtual
sc_min_onlyprotocols::simple_moves::ShakeStructureMoverprivate
scorefunction_initializedprotocols::simple_moves::ShakeStructureMoverprivate
scorefxnprotocols::simple_moves::ShakeStructureMoverprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_ensemble_diversity(core::Real ca_rmsd)protocols::simple_moves::ShakeStructureMover
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_is_properly_initialized(bool truefalse)protocols::simple_moves::ShakeStructureMoverprotected
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_mc_temp(core::Real temperature)protocols::simple_moves::ShakeStructureMoverprotected
set_mc_temperature(core::Real temp)protocols::simple_moves::ShakeStructureMover
set_min_scorefunction(core::scoring::ScoreFunctionOP scfxn)protocols::simple_moves::ShakeStructureMoverprotected
set_minimize_with_cst(bool truefalse)protocols::simple_moves::ShakeStructureMover
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_nrounds(int new_nrounds)protocols::simple_moves::ShakeStructureMover
set_ramp_fa_rep(bool truefalse)protocols::simple_moves::ShakeStructureMover
set_rmsd_target_tolerance(core::Real tol)protocols::simple_moves::ShakeStructureMover
set_sc_min(bool truefalse)protocols::simple_moves::ShakeStructureMover
set_scorefunction(core::scoring::ScoreFunction &s)protocols::simple_moves::ShakeStructureMover
set_skip_low_temp_phase(bool truefalse)protocols::simple_moves::ShakeStructureMover
set_temp_based_on_ens_diversity(core::pose::Pose &p, core::scoring::ScoreFunction &s)protocols::simple_moves::ShakeStructureMoverprotected
set_testing_phase(bool truefalse)protocols::simple_moves::ShakeStructureMoverprotected
set_type(std::string const &setting)protocols::moves::Moverinline
setup_ca_constraints(core::pose::Pose &pose, core::scoring::ScoreFunction &s, float const CA_cutoff, float const cst_tol)protocols::simple_moves::ShakeStructureMoverprotectedvirtual
setup_for_run(core::pose::Pose &p)protocols::simple_moves::ShakeStructureMoverprotectedvirtual
setup_movers(protocols::simple_moves::SmallMoverOP gsmall, protocols::simple_moves::ShearMoverOP gshear, core::Real small_H_angle_max, core::Real small_E_angle_max, core::Real small_L_angle_max, core::Real shear_H_angle_max, core::Real shear_E_angle_max, core::Real shear_L_angle_max)protocols::simple_moves::ShakeStructureMoverprotected
ShakeStructureMover()protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s)protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s, core::Real temperature)protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s, core::Real ens_diversity, core::Real ens_div_tolerance)protocols::simple_moves::ShakeStructureMover
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
skip_low_temp_phaseprotocols::simple_moves::ShakeStructureMoverprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
testing_phaseprotocols::simple_moves::ShakeStructureMoverprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~Mover()protocols::moves::Movervirtual
~ShakeStructureMover()protocols::simple_moves::ShakeStructureMovervirtual