protocols::simple_moves::ShakeStructureMover Member List

This is the complete list of members for protocols::simple_moves::ShakeStructureMover, including all inherited members.

apply(core::pose::Pose &p)	protocols::simple_moves::ShakeStructureMover	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
create_ensemble(core::pose::Pose &p, core::scoring::ScoreFunction &s)	protocols::simple_moves::ShakeStructureMover	protected
cst_weight	protocols::simple_moves::ShakeStructureMover	private
ensemble_ca_rmsd	protocols::simple_moves::ShakeStructureMover	private
ensemble_ca_rmsd_tolerance	protocols::simple_moves::ShakeStructureMover	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_ensemble_ca_rmsd()	protocols::simple_moves::ShakeStructureMover
get_ensemble_diversity()	protocols::simple_moves::ShakeStructureMover
get_harmonic_ca_cst_std_dev()	protocols::simple_moves::ShakeStructureMover
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_mc_temperature()	protocols::simple_moves::ShakeStructureMover
get_min_cst()	protocols::simple_moves::ShakeStructureMover
get_min_scorefunction()	protocols::simple_moves::ShakeStructureMover
get_minimize_with_cst()	protocols::simple_moves::ShakeStructureMover
get_name() const	protocols::simple_moves::ShakeStructureMover	virtual
get_native_pose() const	protocols::moves::Mover
get_nrounds()	protocols::simple_moves::ShakeStructureMover
get_ramp_fa_rep()	protocols::simple_moves::ShakeStructureMover
get_rmsd_target_tolerance()	protocols::simple_moves::ShakeStructureMover
get_sc_min()	protocols::simple_moves::ShakeStructureMover
get_scorefunction()	protocols::simple_moves::ShakeStructureMover
get_scorefunction_initialized()	protocols::simple_moves::ShakeStructureMover
get_skip_low_temp_phase()	protocols::simple_moves::ShakeStructureMover
get_testing_phase()	protocols::simple_moves::ShakeStructureMover
get_type() const	protocols::moves::Mover	inline
harmonic_ca_cst_std_dev	protocols::simple_moves::ShakeStructureMover	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
is_properly_initialized	protocols::simple_moves::ShakeStructureMover	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mc_temp	protocols::simple_moves::ShakeStructureMover	private
min_cst	protocols::simple_moves::ShakeStructureMover	private
min_scorefxn	protocols::simple_moves::ShakeStructureMover	private
minimize_with_constraints(core::pose::Pose &p, core::scoring::ScoreFunction &s)	protocols::simple_moves::ShakeStructureMover	protectedvirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
nrounds	protocols::simple_moves::ShakeStructureMover	private
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
ramp_fa_rep	protocols::simple_moves::ShakeStructureMover	private
reduce_fa_rep(float fraction_fa_rep, core::scoring::ScoreFunction &s)	protocols::simple_moves::ShakeStructureMover	protected
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
run_mc(core::pose::Pose &p, core::scoring::ScoreFunction &s, core::Real temperature)	protocols::simple_moves::ShakeStructureMover	protectedvirtual
save_state(SerializableState &state)	protocols::moves::Mover	virtual
sc_min_only	protocols::simple_moves::ShakeStructureMover	private
scorefunction_initialized	protocols::simple_moves::ShakeStructureMover	private
scorefxn	protocols::simple_moves::ShakeStructureMover	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_ensemble_diversity(core::Real ca_rmsd)	protocols::simple_moves::ShakeStructureMover
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_is_properly_initialized(bool truefalse)	protocols::simple_moves::ShakeStructureMover	protected
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_mc_temp(core::Real temperature)	protocols::simple_moves::ShakeStructureMover	protected
set_mc_temperature(core::Real temp)	protocols::simple_moves::ShakeStructureMover
set_min_scorefunction(core::scoring::ScoreFunctionOP scfxn)	protocols::simple_moves::ShakeStructureMover	protected
set_minimize_with_cst(bool truefalse)	protocols::simple_moves::ShakeStructureMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_nrounds(int new_nrounds)	protocols::simple_moves::ShakeStructureMover
set_ramp_fa_rep(bool truefalse)	protocols::simple_moves::ShakeStructureMover
set_rmsd_target_tolerance(core::Real tol)	protocols::simple_moves::ShakeStructureMover
set_sc_min(bool truefalse)	protocols::simple_moves::ShakeStructureMover
set_scorefunction(core::scoring::ScoreFunction &s)	protocols::simple_moves::ShakeStructureMover
set_skip_low_temp_phase(bool truefalse)	protocols::simple_moves::ShakeStructureMover
set_temp_based_on_ens_diversity(core::pose::Pose &p, core::scoring::ScoreFunction &s)	protocols::simple_moves::ShakeStructureMover	protected
set_testing_phase(bool truefalse)	protocols::simple_moves::ShakeStructureMover	protected
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_ca_constraints(core::pose::Pose &pose, core::scoring::ScoreFunction &s, float const CA_cutoff, float const cst_tol)	protocols::simple_moves::ShakeStructureMover	protectedvirtual
setup_for_run(core::pose::Pose &p)	protocols::simple_moves::ShakeStructureMover	protectedvirtual
setup_movers(protocols::simple_moves::SmallMoverOP gsmall, protocols::simple_moves::ShearMoverOP gshear, core::Real small_H_angle_max, core::Real small_E_angle_max, core::Real small_L_angle_max, core::Real shear_H_angle_max, core::Real shear_E_angle_max, core::Real shear_L_angle_max)	protocols::simple_moves::ShakeStructureMover	protected
ShakeStructureMover()	protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s)	protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s, core::Real temperature)	protocols::simple_moves::ShakeStructureMover
ShakeStructureMover(core::scoring::ScoreFunctionOP s, core::Real ens_diversity, core::Real ens_div_tolerance)	protocols::simple_moves::ShakeStructureMover
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
skip_low_temp_phase	protocols::simple_moves::ShakeStructureMover	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
testing_phase	protocols::simple_moves::ShakeStructureMover	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
~Mover()	protocols::moves::Mover	virtual
~ShakeStructureMover()	protocols::simple_moves::ShakeStructureMover	virtual