Rosetta Protocols  2014.35
Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members
protocols::abinitio::abscript::AbscriptStageMover Class Reference

#include <AbscriptStageMover.hh>

Public Member Functions

 AbscriptStageMover (StageID stage, moves::MonteCarloOP mc, core::scoring::ScoreFunctionOP score, core::Size cycles)
void apply (core::pose::Pose &)
void yield_submovers (MoverSet &set) const
std::string get_name () const
 Each derived class must specify its name. The class name. More...
bool setup_stage (core::pose::Pose &pose, core::Real const &progress)
void add_submover (ClaimingMoverOP mover, core::Real weight)
void add_preparer (StagePreparerOP mover)
void set_cycles_adjust (core::Real in)
void set_seq_sep_ramping (core::Real const slope, core::Real const intercept)
void set_chainbreak_ramping (core::Real const slope, core::Real const intercept)
core::Real const & seq_sep_intercept ()
core::scoring::ScoreFunctionCOP scorefxn () const
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
virtual ~Mover ()
virtual MoverSP create ()
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void parse_state (SerializableState const &state)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
virtual void save_state (SerializableState &state)
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 Mover (Mover const &other)
Moveroperator= (Mover const &other)
 assignment operator More...
virtual core::Real last_proposal_density_ratio ()
std::string const & type () const
void set_type (std::string const &setting)
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
void set_current_tag (std::string const &new_tag)
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
PoseCOP get_input_pose () const
PoseCOP get_native_pose () const
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
void type (const std::string &type_in)
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
std::string get_type () const
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
virtual Stringsinfo ()
 non-const accessor More...
virtual Strings const & info () const
 const accessor More...
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
void set_current_job (protocols::jobdist::BasicJobCOP job)
jobdist::BasicJobCOP get_current_job () const
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...

Private Types

typedef std::set< ClaimingMoverOPMoverSet
typedef std::set< StagePreparerOPPreparerSet

Private Member Functions

void update_max_seq_sep (core::pose::Pose &pose, core::Real const &progress)

Private Attributes

StageID stage_
moves::RandomMoverOP random_mover_
MoverSet movers_
PreparerSet preparers_
core::Size const cycles_
core::Real cycles_adjust_
core::scoring::ScoreFunctionOP score_
moves::MonteCarloOP mc_
core::Real temperature_
core::Real seqsep_slope_
core::Real seqsep_intcpt_
core::Real chbreak_slope_
core::Real chbreak_intcpt_
constraints_additional::MaxSeqSepConstraintSetOP constraints_

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
typedef core::pose::Pose Pose
typedef core::pose::PoseCOP PoseCOP
typedef std::list< std::stringStrings
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
static void register_options ()
 Overload this static method if you access options within the mover. More...
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::abinitio::abscript::AbscriptStageMover::AbscriptStageMover ( StageID  stage,
moves::MonteCarloOP  mc,
core::scoring::ScoreFunctionOP  score,
core::Size  cycles 

References random_mover_.

Member Function Documentation

void protocols::abinitio::abscript::AbscriptStageMover::add_preparer ( StagePreparerOP  mover)

References preparers_.

void protocols::abinitio::abscript::AbscriptStageMover::add_submover ( ClaimingMoverOP  mover,
core::Real  weight 

References movers_, and random_mover_.

void protocols::abinitio::abscript::AbscriptStageMover::apply ( core::pose::Pose pose)
std::string protocols::abinitio::abscript::AbscriptStageMover::get_name ( ) const

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References stage_, and utility::to_string().

core::scoring::ScoreFunctionCOP protocols::abinitio::abscript::AbscriptStageMover::scorefxn ( ) const

References score_.

core::Real const& protocols::abinitio::abscript::AbscriptStageMover::seq_sep_intercept ( )

References seqsep_intcpt_.

void protocols::abinitio::abscript::AbscriptStageMover::set_chainbreak_ramping ( core::Real const  slope,
core::Real const  intercept 

References chbreak_intcpt_, and chbreak_slope_.

void protocols::abinitio::abscript::AbscriptStageMover::set_cycles_adjust ( core::Real  in)

References cycles_adjust_.

void protocols::abinitio::abscript::AbscriptStageMover::set_seq_sep_ramping ( core::Real const  slope,
core::Real const  intercept 

References seqsep_intcpt_, and seqsep_slope_.

bool protocols::abinitio::abscript::AbscriptStageMover::setup_stage ( core::pose::Pose pose,
core::Real const &  progress 
void protocols::abinitio::abscript::AbscriptStageMover::update_max_seq_sep ( core::pose::Pose pose,
core::Real const &  progress 
void protocols::abinitio::abscript::AbscriptStageMover::yield_submovers ( MoverSet set) const

References movers_, and preparers_.

Member Data Documentation

core::Real protocols::abinitio::abscript::AbscriptStageMover::chbreak_intcpt_
core::Real protocols::abinitio::abscript::AbscriptStageMover::chbreak_slope_
constraints_additional::MaxSeqSepConstraintSetOP protocols::abinitio::abscript::AbscriptStageMover::constraints_

Referenced by update_max_seq_sep().

core::Size const protocols::abinitio::abscript::AbscriptStageMover::cycles_

Referenced by apply().

core::Real protocols::abinitio::abscript::AbscriptStageMover::cycles_adjust_

Referenced by apply(), and set_cycles_adjust().

moves::MonteCarloOP protocols::abinitio::abscript::AbscriptStageMover::mc_
MoverSet protocols::abinitio::abscript::AbscriptStageMover::movers_

Referenced by add_submover(), and yield_submovers().

PreparerSet protocols::abinitio::abscript::AbscriptStageMover::preparers_
moves::RandomMoverOP protocols::abinitio::abscript::AbscriptStageMover::random_mover_
core::scoring::ScoreFunctionOP protocols::abinitio::abscript::AbscriptStageMover::score_
core::Real protocols::abinitio::abscript::AbscriptStageMover::seqsep_intcpt_
core::Real protocols::abinitio::abscript::AbscriptStageMover::seqsep_slope_
StageID protocols::abinitio::abscript::AbscriptStageMover::stage_
core::Real protocols::abinitio::abscript::AbscriptStageMover::temperature_

Referenced by setup_stage().

The documentation for this class was generated from the following files: