protocols::loop_modeling::LoopModeler Member List

This is the complete list of members for protocols::loop_modeling::LoopModeler, including all inherited members.

add_shared_filter(protocols::filters::FilterOP filter)	protocols::loop_modeling::LoopModeler
add_shared_mover(LoopMoverOP mover)	protocols::loop_modeling::LoopModeler
add_shared_refiner(LoopMoverOP refiner)	protocols::loop_modeling::LoopModeler
apply(Pose &pose)	protocols::loop_modeling::LoopMover	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
build_stage()	protocols::loop_modeling::LoopModeler
build_stage_	protocols::loop_modeling::LoopModeler	private
centroid_stage()	protocols::loop_modeling::LoopModeler
centroid_stage_	protocols::loop_modeling::LoopModeler	private
clear_info()	protocols::moves::Mover	inlinevirtual
clear_movers()	protocols::loop_modeling::LoopModeler
clear_movers_and_refiners()	protocols::loop_modeling::LoopModeler
clear_refiners()	protocols::loop_modeling::LoopModeler
clone() const	protocols::moves::Mover	virtual
convert_to_centroid(Pose &pose)	protocols::loop_modeling::LoopModeler	private
convert_to_fullatom(Pose &pose, Pose &original_pose)	protocols::loop_modeling::LoopModeler	private
create()	protocols::moves::Mover	virtual
deregister_nested_loop_movers()	protocols::loop_modeling::LoopMover	protected
disable_build_stage()	protocols::loop_modeling::LoopModeler
disable_centroid_stage()	protocols::loop_modeling::LoopModeler
disable_fullatom_stage()	protocols::loop_modeling::LoopModeler
do_apply(Pose &pose)	protocols::loop_modeling::LoopModeler	protectedvirtual
protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop)	protocols::loop_modeling::LoopMover	protectedvirtual
dont_manage_score_function()	protocols::loop_modeling::LoopMover	protected
enable_build_stage()	protocols::loop_modeling::LoopModeler
enable_centroid_stage()	protocols::loop_modeling::LoopModeler
enable_fullatom_stage()	protocols::loop_modeling::LoopModeler
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_stage()	protocols::loop_modeling::LoopModeler
fullatom_stage_	protocols::loop_modeling::LoopModeler	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_loops() const	protocols::loop_modeling::LoopMover
get_name() const	protocols::loop_modeling::LoopModeler	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_nested_loop_movers() const	protocols::loop_modeling::LoopMover	protected
get_score_function() const	protocols::loop_modeling::LoopMover
get_score_function()	protocols::loop_modeling::LoopMover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
is_build_stage_enabled_	protocols::loop_modeling::LoopModeler	private
is_centroid_stage_enabled_	protocols::loop_modeling::LoopModeler	private
is_fullatom_stage_enabled_	protocols::loop_modeling::LoopModeler	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
LoopModeler()	protocols::loop_modeling::LoopModeler
LoopMover()	protocols::loop_modeling::LoopMover
mark_as_default()	protocols::loop_modeling::LoopModeler
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, Pose const &pose)	protocols::loop_modeling::LoopModeler	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
register_nested_loop_mover(LoopMoverSubclassOP mover)	protocols::loop_modeling::LoopMover	inlineprotected
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
repack_everything_before_fullatom(bool setting)	protocols::loop_modeling::LoopModeler
repack_everything_before_fullatom_	protocols::loop_modeling::LoopModeler	private
request_fold_tree() const	protocols::loop_modeling::LoopMover	virtual
reset_status()	protocols::moves::Mover
save_state(SerializableState &state)	protocols::moves::Mover	virtual
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop(Loop const &loop)	protocols::loop_modeling::LoopMover
set_loops(Loops const &loops)	protocols::loop_modeling::LoopMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_score_function(core::scoring::ScoreFunctionOP sfxn)	protocols::loop_modeling::LoopMover
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_empty_config()	protocols::loop_modeling::LoopModeler
setup_fold_tree(Pose &pose, Loops const &loops, FoldTreeRequest request)	protocols::loop_modeling::LoopMover	static
setup_kic_config()	protocols::loop_modeling::LoopModeler
setup_next_gen_kic_config()	protocols::loop_modeling::LoopModeler
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trust_fold_tree()	protocols::loop_modeling::LoopMover
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
was_successful() const	protocols::loop_modeling::LoopMover
~LoopModeler()	protocols::loop_modeling::LoopModeler
~LoopMover()	protocols::loop_modeling::LoopMover
~Mover()	protocols::moves::Mover	virtual