protocols::antibody::design::DesignInstructionsParser Class Reference

Lightweight class for parsing design instructions. More...

#include <DesignInstructionsParser.hh>

Public Member Functions
	DesignInstructionsParser (AntibodyInfoCOP ab_info, string const path)
	~DesignInstructionsParser ()
void	read_cdr_graft_instructions (GraftInstructions &instructions)
void	read_cdr_design_instructions (DesignInstructions &instructions)

Private Types
typedef std::map< CDRNameEnum, CDRGraftInstructions >	GraftInstructions
typedef std::map< CDRNameEnum, CDRDesignInstructions >	DesignInstructions

Private Member Functions
void	check_path ()
	Tries to find the path in either database, relative, or absolute. More...
void	parse_cdr_graft_general_options (GraftInstructions &instructions, vector1< string > &lineSP) const
	Graft Instructions Methods. More...
void	parse_cdr_graft_type_options (GraftInstructions &instructions, vector1< string > &lineSP) const
void	parse_cdr_graft_mintype (GraftInstructions &instructions, vector1< string > &lineSP) const
void	parse_cdr_design_option (DesignInstructions &instructions, vector1< string > &lineSP) const

Private Attributes
std::string	instructions_path_
AntibodyInfoCOP	ab_info_
AntibodyEnumManagerOP	ab_manager_
CDRClusterEnumManagerOP	cluster_manager_

Detailed Description

Lightweight class for parsing design instructions.

Member Typedef Documentation

typedef std::map< CDRNameEnum, CDRDesignInstructions > protocols::antibody::design::DesignInstructionsParser::DesignInstructions

private

typedef std::map< CDRNameEnum, CDRGraftInstructions > protocols::antibody::design::DesignInstructionsParser::GraftInstructions

private

Constructor & Destructor Documentation

protocols::antibody::design::DesignInstructionsParser::DesignInstructionsParser	(	AntibodyInfoCOP	ab_info,
		string const	path
	)

protocols::antibody::design::DesignInstructionsParser::~DesignInstructionsParser

(

)

Member Function Documentation

void protocols::antibody::design::DesignInstructionsParser::check_path ( )

private

Tries to find the path in either database, relative, or absolute.

References basic::database::full_name(), and utility_exit_with_message.

void protocols::antibody::design::DesignInstructionsParser::parse_cdr_design_option ( DesignInstructions &  instructions, vector1< string > &  lineSP  ) const

private

void protocols::antibody::design::DesignInstructionsParser::parse_cdr_graft_general_options ( GraftInstructions &  instructions, vector1< string > &  lineSP  ) const

private

Graft Instructions Methods.

References option, and utility_exit_with_message.

void protocols::antibody::design::DesignInstructionsParser::parse_cdr_graft_mintype ( GraftInstructions &  instructions, vector1< string > &  lineSP  ) const

private

References protocols::antibody::design::centroid_relax, protocols::antibody::design::minimize, protocols::antibody::design::no_min, protocols::antibody::design::relax, protocols::antibody::design::repack, and utility_exit_with_message.

void protocols::antibody::design::DesignInstructionsParser::parse_cdr_graft_type_options ( GraftInstructions &  instructions, vector1< string > &  lineSP  ) const

private

References utility::string2int(), type, and utility_exit_with_message.

void protocols::antibody::design::DesignInstructionsParser::read_cdr_design_instructions

(

DesignInstructions &

instructions

)

References getline(), option, PyAssert, startswith(), string_split_multi_delim(), and utility::trim().

Referenced by protocols::antibody::design::AntibodySeqDesignMover::read_instructions().

void protocols::antibody::design::DesignInstructionsParser::read_cdr_graft_instructions

(

GraftInstructions &

instructions

)

References getline(), PyAssert, startswith(), string_split_multi_delim(), protocols::antibody::TR, and utility::trim().

Referenced by protocols::antibody::design::AntibodyGraftDesignMover::read_instructions().

Member Data Documentation

AntibodyInfoCOP protocols::antibody::design::DesignInstructionsParser::ab_info_

private

AntibodyEnumManagerOP protocols::antibody::design::DesignInstructionsParser::ab_manager_

private

CDRClusterEnumManagerOP protocols::antibody::design::DesignInstructionsParser::cluster_manager_

private

std::string protocols::antibody::design::DesignInstructionsParser::instructions_path_

private

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The documentation for this class was generated from the following files:

• src/protocols/antibody/design/DesignInstructionsParser.hh
• src/protocols/antibody/design/DesignInstructionsParser.cc