Rosetta Protocols  2014.35
protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure Member List

This is the complete list of members for protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure, including all inherited members.

apply(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosurevirtual
apply(core::pose::Pose &more_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosurevirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
best_fragment_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
best_score_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
bIdealLoopClosing() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
bIdealLoopClosing_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
bKeepFragments_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
bQuickTest() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinlineprotected
bQuickTest_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
chainbreak_max_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
closure_fragments() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
closure_fragments_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
create()protocols::moves::Movervirtual
determine_loop(core::pose::Pose const &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
evaluator_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
filter_cst_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
filter_cst_weight_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
filter_score(core::pose::Pose &pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
Filters_map typedefprotocols::moves::Mover
fragments(core::fragment::FragSetCOP frags)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
fragset_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
fresh_instance() const protocols::moves::Movervirtual
generate_window_list(Size loop_size, WindowList &window_list) const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosurevirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
give_up_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
keep_fragments(bool setting=true)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
max_loop_size_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
min_breakout_fast_loops_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
min_breakout_good_loops_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
min_fast_loops_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
min_good_loops_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
min_loop_size_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
movemap() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
movemap(core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
movemap_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
nr_scored_fragments_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
nr_scored_sampling_passes_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
operator=(Mover const &other)protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
Parent typedefprotocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
process_fragments(core::fragment::FrameList &frame_in, core::pose::Pose const &more_cut, core::pose::Pose const &loop_pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
register_options()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosurestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
sample_loops(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosurevirtual
save_state(SerializableState &state)protocols::moves::Movervirtual
score_delta_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
scored_frag_cycle_ratio(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
scored_frag_cycle_ratio_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
scorefxn() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
scorefxn(core::scoring::ScoreFunctionOP sfxn)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
scorefxn_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
select_final_loop(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosurevirtual
set_bIdealLoopClosing(bool setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
set_chainbreak_max(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_defaults()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
set_evaluation(evaluation::MetaPoseEvaluatorOP ev)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loop(Loop const &loop_in)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
setPoseExtraScore(core::pose::Pose &pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosurestatic
setup_frag_scorefxn()protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
short_frag_cycle_ratio(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureinline
short_frag_cycle_ratio_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
SlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
SlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
ss_info_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
vdw_delta_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
vdw_score_type_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
WidthFirstSlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
WidthFirstSlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
window_acceptance_ratio_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosureprotected
WindowList typedefprotocols::loops::loop_closure::ccd::SlidingWindowLoopClosureprotected
~Mover()protocols::moves::Movervirtual
~SlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure