Rosetta Protocols  2014.35
Public Member Functions | List of all members
protocols::protein_interface_design::ParserJobInputter Class Reference

#include <ParserJobInputter.hh>

Public Member Functions

 ParserJobInputter ()
 
virtual ~ParserJobInputter ()
 
virtual void pose_from_job (core::pose::Pose &pose, protocols::jd2::JobOP job)
 this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb More...
 
- Public Member Functions inherited from protocols::jd2::PDBJobInputter
 PDBJobInputter ()
 
virtual ~PDBJobInputter ()
 
virtual void fill_jobs (Jobs &jobs)
 this function determines what jobs exist from -s/-l More...
 
virtual
JobInputterInputSource::Enum 
input_source () const
 Return the type of input source that the PDBJobInputter is currently using. More...
 
- Public Member Functions inherited from protocols::jd2::JobInputter
virtual ~JobInputter ()
 

Additional Inherited Members

- Static Public Member Functions inherited from protocols::jd2::JobInputter
static std::string job_inputter_input_source_to_string (JobInputterInputSource::Enum source)
 call this with input_source() to get the input source of a particular job inputter More...
 
- Protected Member Functions inherited from protocols::jd2::JobInputter
void load_pose_into_job (core::pose::Pose const &pose, JobOP job)
 this function modifies the InnerJob's pose. Access to that pose is via friendship. More...
 
void load_pose_into_job (core::pose::PoseCOP pose, JobOP job)
 this function modifies the InnerJob's pose. Access to that pose is via friendship. More...
 
virtual core::Size get_nstruct () const
 this code is here to restrict the use of inner_job_nonconst (this class is a friend class and can do it) More...
 

Constructor & Destructor Documentation

protocols::protein_interface_design::ParserJobInputter::ParserJobInputter ( )

References protocols::TR.

protocols::protein_interface_design::ParserJobInputter::~ParserJobInputter ( )
virtual

Member Function Documentation

void protocols::protein_interface_design::ParserJobInputter::pose_from_job ( core::pose::Pose pose,
protocols::jd2::JobOP  job 
)
virtual

this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb

This function will first see if the pose already exists in the Job. If not, it will read it into the pose reference, and hand a COP cloned from that pose to the Job. If the pose pre-exists it just copies the COP's pose into it.

Reimplemented from protocols::jd2::PDBJobInputter.

References protocols::jd2::Job::input_tag(), protocols::protein_interface_design::PatchdockReader::read_poses(), and protocols::TR.


The documentation for this class was generated from the following files: