Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::StemFinder Class Reference

#include <StemFinderFilter.hh>

Public Member Functions

 StemFinder ()
 
virtual ~StemFinder ()
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)
 
core::Real from_res () const
 
void from_res (core::Real const r)
 
core::Real to_res () const
 
void to_res (core::Real const r)
 
core::Real rmsd () const
 
void rmsd (core::Real const c)
 
utility::vector1< std::stringfilenames () const
 
void add_filename (std::string const s)
 
bool stems_on_sse () const
 
void stems_on_sse (bool const b)
 
core::Real neighbor_distance () const
 
void neighbor_distance (core::Real const n)
 
void stems_are_neighbors (bool const b)
 
bool stems_are_neighbors () const
 
void neighbor_separation (core::Size const c)
 
core::Size neighbor_separation () const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Size from_res_
 
core::Size to_res_
 
core::Real rmsd_
 
utility::vector1< std::stringfilenames_
 
bool stems_on_sse_
 
bool stems_are_neighbors_
 
core::Real neighbor_distance_
 
core::Size neighbor_separation_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::StemFinder::StemFinder ( )

References filenames_, and filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::StemFinder::~StemFinder ( )
virtual

Member Function Documentation

void protocols::simple_filters::StemFinder::add_filename ( std::string const  s)

References filenames_.

bool protocols::simple_filters::StemFinder::apply ( core::pose::Pose const &  pose) const
virtual
filters::FilterOP protocols::simple_filters::StemFinder::clone ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References StemFinder().

utility::vector1< std::string > protocols::simple_filters::StemFinder::filenames ( ) const
inline

References filenames_.

filters::FilterOP protocols::simple_filters::StemFinder::fresh_instance ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References StemFinder().

core::Real protocols::simple_filters::StemFinder::from_res ( ) const
inline

References from_res_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::from_res ( core::Real const  r)
inline

References from_res_.

core::Real protocols::simple_filters::StemFinder::neighbor_distance ( ) const
inline

References neighbor_distance_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::neighbor_distance ( core::Real const  n)
inline

References neighbor_distance_.

void protocols::simple_filters::StemFinder::neighbor_separation ( core::Size const  c)
inline

References neighbor_separation_.

core::Size protocols::simple_filters::StemFinder::neighbor_separation ( ) const
inline

References neighbor_separation_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap ,
filters::Filters_map const &  filters,
moves::Movers_map const &  ,
core::pose::Pose const &  pose 
)
virtual
void protocols::simple_filters::StemFinder::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

core::Real protocols::simple_filters::StemFinder::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

core::Real protocols::simple_filters::StemFinder::rmsd ( ) const
inline

References rmsd_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::rmsd ( core::Real const  c)
inline

References rmsd_.

void protocols::simple_filters::StemFinder::stems_are_neighbors ( bool const  b)
inline
bool protocols::simple_filters::StemFinder::stems_are_neighbors ( ) const
inline

References stems_are_neighbors_.

Referenced by apply(), and parse_my_tag().

bool protocols::simple_filters::StemFinder::stems_on_sse ( ) const
inline

References stems_on_sse_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::stems_on_sse ( bool const  b)
inline
core::Real protocols::simple_filters::StemFinder::to_res ( ) const
inline

References to_res_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::StemFinder::to_res ( core::Real const  r)
inline

References to_res_.

Member Data Documentation

utility::vector1< std::string > protocols::simple_filters::StemFinder::filenames_
private
core::Size protocols::simple_filters::StemFinder::from_res_
private

Referenced by from_res().

core::Real protocols::simple_filters::StemFinder::neighbor_distance_
private

Referenced by neighbor_distance().

core::Size protocols::simple_filters::StemFinder::neighbor_separation_
private

Referenced by neighbor_separation().

core::Real protocols::simple_filters::StemFinder::rmsd_
private

Referenced by rmsd().

bool protocols::simple_filters::StemFinder::stems_are_neighbors_
private

Referenced by stems_are_neighbors().

bool protocols::simple_filters::StemFinder::stems_on_sse_
private

Referenced by stems_on_sse().

core::Size protocols::simple_filters::StemFinder::to_res_
private

Referenced by to_res().


The documentation for this class was generated from the following files: