A protocols::moves::Mover that packs the side-chains using a rotamer library It uses a ScoreFunction for packing and a PackerTask, or a TaskFactory that generates a PackerTask, for instructions on what rotamer sets are allowed at each residue position during packing. More...

#include <PackRotamersMover.hh>

Public Member Functions
	PackRotamersMover ()
	default constructor More...

	PackRotamersMover (std::string const &)
	constructor with typename More...

	PackRotamersMover (ScoreFunctionCOP scorefxn, PackerTaskCOP task=0, core::Size nloop=1)
	Constructs a PackRotamersMover with PackerTask <task> evaluated using <scorefxn> More...

virtual	~PackRotamersMover ()

	PackRotamersMover (PackRotamersMover const &other)

virtual void	apply (Pose &pose)
	Performs side-chain packing based on the input PackerTask using the input ScoreFunction. More...

virtual std::string	get_name () const
	Each derived class must specify its name. The class name. More...

virtual void	show (std::ostream &output=std::cout) const
	Outputs details about the Mover, including current settings. More...

bool	task_is_valid (Pose const &pose) const
	when the PackerTask was not generated locally, verify compatibility with pose More...

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, protocols::moves::MoverCacheSP cache)

virtual void	parse_my_tag (TagCOP, basic::datacache::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, Pose const &)
	parse XML (specifically in the context of the parser/scripting scheme) More...

virtual void	parse_score_function (TagCOP, basic::datacache::DataMap const &, Filters_map const &, protocols::moves::Movers_map const &, Pose const &)
	parse "scorefxn" XML option (can be employed virtually by derived Packing movers) More...

virtual void	parse_task_operations (TagCOP, basic::datacache::DataMap const &, Filters_map const &, protocols::moves::Movers_map const &, Pose const &)
	parse "task_operations" XML option (can be employed virtually by derived Packing movers) More...

virtual protocols::moves::MoverOP	fresh_instance () const
	required in the context of the parser/scripting scheme More...

virtual protocols::moves::MoverOP	clone () const
	required in the context of the parser/scripting scheme More...

void	score_function (ScoreFunctionCOP sf)
	Sets the ScoreFunction to <sf> More...

void	task_factory (TaskFactoryCOP tf)
	Sets the TaskFactory to <tf> More...

void	task (PackerTaskCOP t)
	Sets the PackerTask to <t> More...

void	nloop (core::Size nloop_in)

ScoreFunctionCOP	score_function () const
	Returns the ScoreFunction. More...

PackerTaskCOP	task () const
	Returns the PackerTask. More...

core::Size	nloop () const

TaskFactoryCOP	task_factory () const
	Returns the TaskFactory. More...

RotamerSetsCOP	rotamer_sets () const

InteractionGraphBaseCOP	ig () const

Public Member Functions inherited from protocols::moves::Mover
	Mover ()

virtual	~Mover ()

virtual MoverSP	create ()

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	parse_state (SerializableState const &state)

virtual void	save_state (SerializableState &state)

	Mover (std::string const &type_name)
	sets the type for a mover; name_ has been removed (2010/05/14) More...

	Mover (Mover const &other)

Mover &	operator= (Mover const &other)
	assignment operator More...

virtual core::Real	last_proposal_density_ratio ()

std::string const &	type () const

void	set_type (std::string const &setting)

std::string	get_current_tag () const
	A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...

void	set_current_tag (std::string const &new_tag)

virtual void	set_input_pose (PoseCOP pose)
	setter for poses contained for rms More...

virtual void	set_native_pose (PoseCOP pose)
	setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...

PoseCOP	get_input_pose () const

PoseCOP	get_native_pose () const

virtual void	test_move (Pose &pose)
	: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...

void	type (const std::string &type_in)

std::string	get_type () const

MoverStatus	get_last_move_status () const
	end parser interface, start Job Distributor interface///////////// More...

void	reset_status ()
	resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...

virtual core::pose::PoseOP	get_additional_output ()
	Mechanism by which a mover may return multiple output poses from a single input pose. More...

virtual void	clear_info ()
	Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...

virtual Strings &	info ()
	non-const accessor More...

virtual Strings const &	info () const
	const accessor More...

virtual bool	reinitialize_for_each_job () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...

virtual bool	reinitialize_for_new_input () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...

void	set_current_job (protocols::jobdist::BasicJobCOP job)

jobdist::BasicJobCOP	get_current_job () const

Protected Member Functions
virtual void	setup (Pose &pose)
	get rotamers, energies. Also performs lazy initialization of ScoreFunction, PackerTask. More...

virtual core::PackerEnergy	run (Pose &pose, utility::vector0< int > rot_to_pack=utility::vector0< int >()) const

virtual void	note_packertask_settings (Pose const &)
	note PackerTask's packable and designable residues as string info More...

Protected Member Functions inherited from protocols::moves::Mover
void	set_last_move_status (MoverStatus status)
	nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Private Attributes
ScoreFunctionCOP	scorefxn_

PackerTaskCOP	task_

core::Size	nloop_

TaskFactoryCOP	task_factory_

RotamerSetsOP	rotamer_sets_

InteractionGraphBaseOP	ig_

Additional Inherited Members
Static Public Member Functions inherited from protocols::moves::Mover
static std::string	name ()

static void	register_options ()
	Overload this static method if you access options within the mover. More...

Detailed Description

A protocols::moves::Mover that packs the side-chains using a rotamer library It uses a ScoreFunction for packing and a PackerTask, or a TaskFactory that generates a PackerTask, for instructions on what rotamer sets are allowed at each residue position during packing.

Common Methods: PackRotamersMover.apply

Note: please derive from PackRotamersMover instead of attempting to add protocol-specific stuff here!

Member Typedef Documentation

typedef core::pack::interaction_graph::InteractionGraphBaseCOP protocols::simple_moves::PackRotamersMover::InteractionGraphBaseCOP

typedef core::pack::interaction_graph::InteractionGraphBaseOP protocols::simple_moves::PackRotamersMover::InteractionGraphBaseOP

typedef core::pack::task::PackerTaskCOP protocols::simple_moves::PackRotamersMover::PackerTaskCOP

typedef core::pack::rotamer_set::RotamerSetsCOP protocols::simple_moves::PackRotamersMover::RotamerSetsCOP

typedef core::pack::rotamer_set::RotamerSetsOP protocols::simple_moves::PackRotamersMover::RotamerSetsOP

typedef core::scoring::ScoreFunctionCOP protocols::simple_moves::PackRotamersMover::ScoreFunctionCOP

typedef core::pack::task::TaskFactoryCOP protocols::simple_moves::PackRotamersMover::TaskFactoryCOP

Constructor & Destructor Documentation

protocols::simple_moves::PackRotamersMover::PackRotamersMover ( )

default constructor

References ndruns, option, and packing.

Referenced by fresh_instance().

protocols::simple_moves::PackRotamersMover::PackRotamersMover ( std::string const & type_name )

constructor with typename

References ndruns, option, and packing.

protocols::simple_moves::PackRotamersMover::PackRotamersMover	(	ScoreFunctionCOP	scorefxn,
		PackerTaskCOP	task = `0`,
		core::Size	nloop = `1`
	)

Constructs a PackRotamersMover with PackerTask <task> evaluated using <scorefxn>

ScoreFunction scorefxn /function to minimize while changine rotamers PackerTask task /object specifying what to design/pack Size (int) nloop /number of loops in the Pose (???)

protocols::simple_moves::PackRotamersMover::~PackRotamersMover ( )

virtual

protocols::simple_moves::PackRotamersMover::PackRotamersMover ( PackRotamersMover const & other )

References ig_, nloop(), nloop_, rotamer_sets_, score_function(), scorefxn_, task(), task_, task_factory(), and task_factory_.

Member Function Documentation

void protocols::simple_moves::PackRotamersMover::apply ( Pose & pose )

virtual

Performs side-chain packing based on the input PackerTask using the input ScoreFunction.

example(s): packmover.apply(pose) See Also: PackerTask ScoreFunction

Implements protocols::moves::Mover.

Reimplemented in protocols::flxbb::FlxbbDesignPack, protocols::dna::DnaInterfacePacker, protocols::dna::DnaInterfaceMultiStateDesign, protocols::dna::DesignProteinBackboneAroundDNA, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::SetReturningPackRotamersMover, and protocols::protein_interface_design::movers::PrepackMover.

References nloop_, run(), and setup().

protocols::moves::MoverOP protocols::simple_moves::PackRotamersMover::clone ( ) const

virtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

Reimplemented in protocols::dna::DnaInterfacePacker, protocols::dna::DnaInterfaceMultiStateDesign, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, and protocols::protein_interface_design::movers::PrepackMover.

Referenced by parse_def().

protocols::moves::MoverOP protocols::simple_moves::PackRotamersMover::fresh_instance ( ) const

virtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

Reimplemented in protocols::dna::DnaInterfacePacker, protocols::dna::DnaInterfaceMultiStateDesign, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, and protocols::protein_interface_design::movers::PrepackMover.

References PackRotamersMover().

std::string protocols::simple_moves::PackRotamersMover::get_name ( ) const

virtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

Reimplemented in protocols::flxbb::FlxbbDesignPack, protocols::dna::DnaInterfacePacker, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::dna::DnaInterfaceMultiStateDesign, protocols::dna::DesignProteinBackboneAroundDNA, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::SetReturningPackRotamersMover, and protocols::protein_interface_design::movers::PrepackMover.

References protocols::simple_moves::PackRotamersMoverCreator::mover_name().

interaction_graph::InteractionGraphBaseCOP protocols::simple_moves::PackRotamersMover::ig ( ) const

References ig_.

Referenced by protocols::dna::DnaInterfacePacker::initialized().

void protocols::simple_moves::PackRotamersMover::nloop ( core::Size nloop_in )

References nloop_.

Referenced by protocols::antibody_legacy::CDRH3Modeler::apply(), and PackRotamersMover().

core::Size protocols::simple_moves::PackRotamersMover::nloop ( ) const

inline

References nloop_.

Referenced by protocols::simple_moves::PackRotamersMoverLazy::apply_to_rotpack(), and protocols::simple_moves::PackRotamersMoverLazy::parse_my_tag().

void protocols::simple_moves::PackRotamersMover::note_packertask_settings ( Pose const & pose )

protectedvirtual

note PackerTask's packable and designable residues as string info

References end, protocols::moves::Mover::info(), core::pose::Pose::pdb_info(), and task_.

Referenced by setup().

void protocols::simple_moves::PackRotamersMover::parse_def	(	utility::lua::LuaObject const &	def,
		utility::lua::LuaObject const &	score_fxns,
		utility::lua::LuaObject const &	tasks,
		protocols::moves::MoverCacheSP	cache
	)

virtual

Reimplemented from protocols::moves::Mover.

Reimplemented in protocols::simple_moves::symmetry::SymPackRotamersMover.

References clone(), nloop_, protocols::elscripts::parse_scoredef(), protocols::elscripts::parse_taskdef(), runtime_assert, score_function(), task_factory(), and utility::lua::LuaObject::to().

Referenced by protocols::simple_moves::symmetry::SymPackRotamersMover::parse_def().

void protocols::simple_moves::PackRotamersMover::parse_my_tag	(	TagCOP	tag,
		basic::datacache::DataMap &	datamap,
		Filters_map const &	filters,
		protocols::moves::Movers_map const &	movers,
		Pose const &	pose
	)

virtual

parse XML (specifically in the context of the parser/scripting scheme)

Reimplemented from protocols::moves::Mover.

Reimplemented in protocols::dna::DnaInterfacePacker, protocols::simple_moves::PackRotamersMoverLazy, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::dna::DnaInterfaceMultiStateDesign, protocols::dna::DesignProteinBackboneAroundDNA, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, and protocols::protein_interface_design::movers::PrepackMover.

References nloop_, parse_score_function(), parse_task_operations(), and runtime_assert.

Referenced by protocols::simple_moves::symmetry::SymPackRotamersMover::parse_my_tag().

void protocols::simple_moves::PackRotamersMover::parse_score_function	(	TagCOP	tag,
		basic::datacache::DataMap const &	datamap,
		Filters_map const &	,
		protocols::moves::Movers_map const &	,
		Pose const &
	)

virtual

parse "scorefxn" XML option (can be employed virtually by derived Packing movers)

References protocols::rosetta_scripts::parse_score_function(), and score_function().

Referenced by protocols::dna::DesignProteinBackboneAroundDNA::parse_my_tag(), protocols::dna::DnaInterfaceMultiStateDesign::parse_my_tag(), protocols::simple_moves::PackRotamersMoverLazy::parse_my_tag(), protocols::dna::DnaInterfacePacker::parse_my_tag(), and parse_my_tag().

void protocols::simple_moves::PackRotamersMover::parse_task_operations	(	TagCOP	tag,
		basic::datacache::DataMap const &	datamap,
		Filters_map const &	,
		protocols::moves::Movers_map const &	,
		Pose const &
	)

virtual

parse "task_operations" XML option (can be employed virtually by derived Packing movers)

References protocols::rosetta_scripts::parse_task_operations(), and task_factory().

Referenced by protocols::dna::DesignProteinBackboneAroundDNA::parse_my_tag(), protocols::dna::DnaInterfaceMultiStateDesign::parse_my_tag(), protocols::simple_moves::PackRotamersMoverLazy::parse_my_tag(), protocols::dna::DnaInterfacePacker::parse_my_tag(), and parse_my_tag().

rotamer_set::RotamerSetsCOP protocols::simple_moves::PackRotamersMover::rotamer_sets ( ) const

References rotamer_sets_.

Referenced by protocols::toolbox::pose_metric_calculators::RotamerBoltzCalculator::computeBoltzWeight(), protocols::dna::DnaInterfacePacker::initialized(), protocols::dna::DnaInterfacePacker::make_dna_sequence_combinations(), protocols::dna::DnaInterfacePacker::measure_specificities(), protocols::dna::DnaInterfacePacker::protein_scan(), protocols::dna::DnaInterfacePacker::reversion_scan(), and protocols::dna::DnaInterfacePacker::standard_packing().

core::PackerEnergy protocols::simple_moves::PackRotamersMover::run	(	Pose &	pose,
		utility::vector0< int >	rot_to_pack = `utility::vector0< int >()`
	)		const

protectedvirtual

Reimplemented in protocols::simple_moves::symmetry::SymPackRotamersMover.

References ig_, pack_rotamers_run(), rotamer_sets_, and task_.

Referenced by protocols::simple_moves::SetReturningPackRotamersMover::apply(), apply(), protocols::flxbb::FlxbbDesignPack::apply(), protocols::simple_moves::PackRotamersMoverLazy::apply_to_rotpack(), protocols::dna::DnaInterfacePacker::measure_specificities(), protocols::dna::DnaInterfacePacker::protein_scan(), protocols::dna::DnaInterfacePacker::reversion_scan(), and protocols::dna::DnaInterfacePacker::standard_packing().

void protocols::simple_moves::PackRotamersMover::score_function ( ScoreFunctionCOP sf )

Sets the ScoreFunction to <sf>

example(s): packmover.score_function(scorefxn) See Also: PackRotamersMover PackRotamersMover.task

References runtime_assert, and scorefxn_.

Referenced by protocols::floppy_tail::FloppyTailMover::apply(), protocols::ncbb::NcbbDockDesignProtocol::apply(), protocols::ncbb::oop::OopDockDesignProtocol::apply(), protocols::ncbb::oop::OopCreatorMover::apply(), protocols::hybridization::CartesianSampler::apply_frame(), protocols::optimize_weights::IterativeOptEDriver::measure_sequence_recovery(), PackRotamersMover(), protocols::flexpep_docking::FlexPepDockingProtocol::set_default(), protocols::docking::DockingEnsemblePrepackProtocol::setup_pack_operation_movers(), and protocols::docking::DockingPrepackProtocol::setup_pack_operation_movers().

ScoreFunctionCOP protocols::simple_moves::PackRotamersMover::score_function ( ) const

Returns the ScoreFunction.

example(s): packmover.score_function() See Also: PackRotamersMover PackRotamersMover.task

References scorefxn_.

void protocols::simple_moves::PackRotamersMover::setup ( Pose & pose )

protectedvirtual

get rotamers, energies. Also performs lazy initialization of ScoreFunction, PackerTask.

Reimplemented in protocols::simple_moves::symmetry::SymPackRotamersMover.

References get_score_function_legacy(), ig_, note_packertask_settings(), pack_rotamers_setup(), core::scoring::PRE_TALARIS_2013_STANDARD_WTS, rotamer_sets_, runtime_assert, scorefxn_, setup_IG_res_res_weights(), task_, task_factory_, task_is_valid(), core::pose::Pose::update_residue_neighbors(), and Warning().

Referenced by protocols::simple_moves::SetReturningPackRotamersMover::apply(), apply(), protocols::flxbb::FlxbbDesignPack::apply(), protocols::simple_moves::PackRotamersMoverLazy::call_setup(), and protocols::dna::DnaInterfacePacker::init_standard().

void protocols::simple_moves::PackRotamersMover::show ( std::ostream & output = std::cout ) const

virtual

Outputs details about the Mover, including current settings.

Ideally, a child Mover should call Mover.show() and add additional information particular to that Mover.

Reimplemented from protocols::moves::Mover.

References score_function(), and protocols::moves::Mover::show().

Referenced by protocols::simple_moves::operator<<().

void protocols::simple_moves::PackRotamersMover::task ( task::PackerTaskCOP t )

Sets the PackerTask to <t>

example(s): packmover.task(task_pack) See Also: PackRotamersMover PackRotamersMover.task_factory

References task_.

Referenced by protocols::protein_interface_design::movers::InterfaceRecapitulationMover::apply(), protocols::toolbox::pose_metric_calculators::RotamerBoltzCalculator::computeBoltzWeight(), and PackRotamersMover().

PackerTaskCOP protocols::simple_moves::PackRotamersMover::task ( ) const

Returns the PackerTask.

example(s): packmover.task() See Also: PackRotamersMover PackRotamersMover.task_factory

References task_.

void protocols::simple_moves::PackRotamersMover::task_factory ( TaskFactoryCOP tf )

Sets the TaskFactory to <tf>

example(s): packmover.task_factory(task_design) See Also: PackRotamersMover PackRotamersMover.task

References runtime_assert, and task_factory_.

Referenced by protocols::metal_interface::ZincHeterodimerMover::apply(), protocols::motifs::MotifDnaPacker::apply(), protocols::floppy_tail::FloppyTailMover::apply(), protocols::ncbb::NcbbDockDesignProtocol::apply(), protocols::ncbb::oop::OopDockDesignProtocol::apply(), protocols::antibody::H3RefineCCD::apply(), protocols::antibody_legacy::CDRH3Modeler::apply(), protocols::ncbb::oop::OopCreatorMover::apply(), protocols::anchored_design::AnchoredRefineMover::apply(), protocols::hybridization::CartesianSampler::apply_frame(), protocols::motifs::MotifDnaPacker::aromatic_motifs(), protocols::relax::ClassicRelax::check_default_full_repacker(), protocols::anchored_design::AnchoredDesignMover::delete_interface_native_sidechains(), protocols::motifs::MotifDnaPacker::expand_motifs(), protocols::antibody::H3RefineCCD::finalize_setup(), protocols::flexpep_docking::FlexPepDockingProtocol::hires_fpdock_protocol(), protocols::optimize_weights::IterativeOptEDriver::measure_rotamer_recovery(), protocols::optimize_weights::IterativeOptEDriver::measure_sequence_recovery(), PackRotamersMover(), protocols::antibody_legacy::AntibodyModeler::relax_cdrs(), protocols::optimize_weights::IterativeOptEDriver::repack_and_minimize_pose(), protocols::motifs::MotifDnaPacker::run_motifs(), protocols::flexpep_docking::FlexPepDockingProtocol::set_default(), protocols::symmetric_docking::SymDockingHiRes::set_dock_mcm_protocol(), protocols::docking::DockingHighResLegacy::set_dock_mcm_protocol(), protocols::docking::DockingEnsemblePrepackProtocol::setup_pack_operation_movers(), and protocols::docking::DockingPrepackProtocol::setup_pack_operation_movers().

TaskFactoryCOP protocols::simple_moves::PackRotamersMover::task_factory ( ) const

Returns the TaskFactory.

example(s): packmover.task_factory() See Also: PackRotamersMover PackRotamersMover.task

References task_factory_.

Referenced by protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::add_states(), protocols::protein_interface_design::movers::PrepackMover::apply(), protocols::simple_moves::SetReturningPackRotamersMover::apply(), protocols::dna::DesignProteinBackboneAroundDNA::apply(), protocols::dna::DnaInterfacePacker::init_standard(), protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::initialize(), protocols::dna::DnaInterfaceMultiStateDesign::initialize(), protocols::dna::DnaInterfacePacker::initialized(), protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::output_alternative_states(), parse_def(), protocols::protein_interface_design::movers::PrepackMover::parse_my_tag(), protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::parse_my_tag(), parse_task_operations(), and protocols::simple_moves::symmetry::SymPackRotamersMover::setup().

bool protocols::simple_moves::PackRotamersMover::task_is_valid ( Pose const & pose ) const

when the PackerTask was not generated locally, verify compatibility with pose

the pose residue types must be equivalent to the ones used to generate the ResidueLevelTasks, because of the way that prevent_repacking and its associated flags work

References core::pose::Pose::residue_type(), task_, and core::pose::Pose::total_residue().

Referenced by protocols::simple_moves::SetReturningPackRotamersMover::apply(), and setup().

Member Data Documentation

InteractionGraphBaseOP protocols::simple_moves::PackRotamersMover::ig_

private

Referenced by ig(), PackRotamersMover(), run(), and setup().

core::Size protocols::simple_moves::PackRotamersMover::nloop_

private

Referenced by apply(), nloop(), PackRotamersMover(), parse_def(), and parse_my_tag().

RotamerSetsOP protocols::simple_moves::PackRotamersMover::rotamer_sets_

private

Referenced by PackRotamersMover(), rotamer_sets(), run(), and setup().

ScoreFunctionCOP protocols::simple_moves::PackRotamersMover::scorefxn_

private

Referenced by protocols::simple_moves::PackRotamersMoverLazy::apply_to_rotpack(), PackRotamersMover(), score_function(), and setup().

PackerTaskCOP protocols::simple_moves::PackRotamersMover::task_

private

Referenced by note_packertask_settings(), PackRotamersMover(), run(), setup(), task(), and task_is_valid().

TaskFactoryCOP protocols::simple_moves::PackRotamersMover::task_factory_

private

Referenced by PackRotamersMover(), setup(), and task_factory().

The documentation for this class was generated from the following files:

src/protocols/simple_moves/PackRotamersMover.hh
src/protocols/simple_moves/PackRotamersMover.cc

Public Types
typedef core::pack::interaction_graph::InteractionGraphBaseOP	InteractionGraphBaseOP

typedef core::pack::interaction_graph::InteractionGraphBaseCOP	InteractionGraphBaseCOP

typedef core::pack::rotamer_set::RotamerSetsOP	RotamerSetsOP

typedef core::pack::rotamer_set::RotamerSetsCOP	RotamerSetsCOP

typedef core::pack::task::PackerTaskCOP	PackerTaskCOP

typedef core::pack::task::TaskFactoryCOP	TaskFactoryCOP

typedef core::scoring::ScoreFunctionCOP	ScoreFunctionCOP

Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP	TagCOP

typedef core::pose::Pose	Pose

typedef core::pose::PoseCOP	PoseCOP

typedef protocols::filters::Filters_map	Filters_map

typedef std::list< std::string >	Strings

Public Types

Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation