#include <BuriedRegionsFilter.hh>

Public Member Functions
	BuriedRegionsFilter ()

	BuriedRegionsFilter (core::Real distance_cutoff, core::Size neighbor_cutoff)

	BuriedRegionsFilter (BuriedRegionsFilter const &)

virtual	~BuriedRegionsFilter ()

core::Real	distance_cutoff ()

void	distance_cutoff (core::Real distance_cutoff)

core::Size	neighbor_cutoff ()

void	neighbor_cutoff (core::Size neighbor_cutoff)

std::string const &	region_string ()

void	region_string (std::string const &region_str)

std::set< core::Size > const &	region ()

void	region (std::set< core::Size > &region)

std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

void	parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &, filters::Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual filters::FilterOP	clone () const

virtual filters::FilterOP	fresh_instance () const

virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual std::string	name () const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
std::string const	type_

std::string	user_defined_name_

std::set< core::Size >	region_

std::string	region_str_

core::Real	distance_cutoff_

core::Size	neighbor_cutoff_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::BuriedRegionsFilter::BuriedRegionsFilter ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::BuriedRegionsFilter::BuriedRegionsFilter	(	core::Real	distance_cutoff,
		core::Size	neighbor_cutoff
	)

References filters.

protocols::simple_filters::BuriedRegionsFilter::BuriedRegionsFilter ( BuriedRegionsFilter const & src )

References filters.

protocols::simple_filters::BuriedRegionsFilter::~BuriedRegionsFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::BuriedRegionsFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References core::conformation::Residue::aa(), core::chemical::aa_h2o, core::pose::Pose::conformation(), distance_cutoff_, core::conformation::find_neighbors(), core::pose::get_resnum_list(), core::graph::UpperEdgeGraph< V, E >::get_vertex(), core::conformation::Residue::name3(), neighbor_cutoff_, region_, region_str_, core::pose::Pose::residue(), core::conformation::residue_point_graph_from_conformation(), core::pose::Pose::total_residue(), core::graph::UEVertex< V, E >::upper_edge_list_begin(), and core::graph::UEVertex< V, E >::upper_edge_list_end().

filters::FilterOP protocols::simple_filters::BuriedRegionsFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References BuriedRegionsFilter().

core::Real protocols::simple_filters::BuriedRegionsFilter::distance_cutoff ( )

References distance_cutoff_.

Referenced by distance_cutoff().

void protocols::simple_filters::BuriedRegionsFilter::distance_cutoff ( core::Real distance_cutoff )

References distance_cutoff(), and distance_cutoff_.

filters::FilterOP protocols::simple_filters::BuriedRegionsFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References BuriedRegionsFilter().

std::string protocols::simple_filters::BuriedRegionsFilter::get_type ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

References type_.

std::string protocols::simple_filters::BuriedRegionsFilter::get_user_defined_name ( ) const

inline

References user_defined_name_.

virtual std::string protocols::simple_filters::BuriedRegionsFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Referenced by set_user_defined_name().

core::Size protocols::simple_filters::BuriedRegionsFilter::neighbor_cutoff ( )

References neighbor_cutoff_.

Referenced by neighbor_cutoff().

void protocols::simple_filters::BuriedRegionsFilter::neighbor_cutoff ( core::Size neighbor_cutoff )

References neighbor_cutoff(), and neighbor_cutoff_.

void protocols::simple_filters::BuriedRegionsFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &	,
		filters::Filters_map const &	,
		moves::Movers_map const &	,
		core::pose::Pose const &
	)