protocols::rotamer_recovery::RRComparerElecDensDiff Class Reference

#include <RRComparerElecDensDiff.hh>

Public Member Functions
	RRComparerElecDensDiff ()
	~RRComparerElecDensDiff ()
	RRComparerElecDensDiff (RRComparerElecDensDiff const &)
virtual std::string	get_name () const
virtual std::string	get_parameters () const
virtual bool	measure_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &score, bool &recovered)
virtual void	set_recovery_threshold (core::Real const recovery_threshold)
virtual core::Real	get_recovery_threshold () const
Public Member Functions inherited from protocols::rotamer_recovery::RRComparer
virtual	~RRComparer ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Attributes
core::Real	recovery_threshold_

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRComparerElecDensDiff::RRComparerElecDensDiff

(

)

protocols::rotamer_recovery::RRComparerElecDensDiff::~RRComparerElecDensDiff

(

)

protocols::rotamer_recovery::RRComparerElecDensDiff::RRComparerElecDensDiff

(

RRComparerElecDensDiff const &

src

)

Member Function Documentation

string protocols::rotamer_recovery::RRComparerElecDensDiff::get_name ( ) const

virtual

Implements protocols::rotamer_recovery::RRComparer.

string protocols::rotamer_recovery::RRComparerElecDensDiff::get_parameters ( ) const

virtual

Implements protocols::rotamer_recovery::RRComparer.

Real protocols::rotamer_recovery::RRComparerElecDensDiff::get_recovery_threshold ( ) const

virtual

References recovery_threshold_.

bool protocols::rotamer_recovery::RRComparerElecDensDiff::measure_rotamer_recovery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2, core::Real &  score, bool &  recovered  )

virtual

Implements protocols::rotamer_recovery::RRComparer.

References core::conformation::Residue::aa(), core::scoring::elec_dens_fast, core::scoring::get_score_function(), core::scoring::electron_density::getDensityMap(), core::scoring::electron_density::ElectronDensity::matchRes(), core::conformation::Residue::name(), core::chemical::ResidueType::name(), core::conformation::Residue::name3(), core::conformation::Residue::nheavyatoms(), nres, num_canonical_aas, basic::options::option, recovery_threshold_, core::conformation::Residue::seqpos(), core::scoring::electron_density::ElectronDensity::set_nres(), core::scoring::electron_density::ElectronDensity::setScoreWindowContext(), core::scoring::electron_density::ElectronDensity::setWindow(), basic::options::OptionKeys::edensity::sliding_window, core::pose::Pose::total_residue(), protocols::rotamer_recovery::TR, core::conformation::Residue::type(), and user.

void protocols::rotamer_recovery::RRComparerElecDensDiff::set_recovery_threshold ( core::Real const  recovery_threshold )

virtual

Implements protocols::rotamer_recovery::RRComparer.

References recovery_threshold_.

Member Data Documentation

core::Real protocols::rotamer_recovery::RRComparerElecDensDiff::recovery_threshold_

private

Referenced by get_recovery_threshold(), measure_rotamer_recovery(), and set_recovery_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRComparerElecDensDiff.hh
• src/protocols/rotamer_recovery/RRComparerElecDensDiff.cc