Rosetta Protocols  2014.35
dna Directory Reference
Directory dependency graph for dna:
src/protocols/dna

Files

file  DesignProteinBackboneAroundDNA.cc
 performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
 
file  DesignProteinBackboneAroundDNA.fwd.hh
 
file  DesignProteinBackboneAroundDNA.hh
 performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
 
file  DesignProteinBackboneAroundDNACreator.hh
 
file  DnaChains.cc
 
file  DnaChains.fwd.hh
 
file  DnaChains.hh
 a descriptive but lightweight class to keep track of (usually basepaired) dna chains
 
file  DnaDesignDef.cc
 
file  DnaDesignDef.fwd.hh
 
file  DnaDesignDef.hh
 
file  DnaInterfaceFinder.cc
 
file  DnaInterfaceFinder.fwd.hh
 
file  DnaInterfaceFinder.hh
 
file  DnaInterfaceMinMover.cc
 
file  DnaInterfaceMinMover.fwd.hh
 
file  DnaInterfaceMinMover.hh
 A mover that minimizes protein residues near DNA.
 
file  DnaInterfaceMinMoverCreator.hh
 
file  DnaInterfaceMultiStateDesign.cc
 
file  DnaInterfaceMultiStateDesign.fwd.hh
 
file  DnaInterfaceMultiStateDesign.hh
 
file  DnaInterfaceMultiStateDesignCreator.hh
 
file  DnaInterfacePacker.cc
 
file  DnaInterfacePacker.fwd.hh
 
file  DnaInterfacePacker.hh
 Intended to perform anything one would want to do in a DNA interface that uses a single incarnation of the RotamerSets/InteractionGraph combo.
 
file  DnaInterfacePackerCreator.hh
 
file  DNAParameters.cc
 A class to query for base-paired partners as well as base pair and base step parameters.
 
file  DNAParameters.fwd.hh
 A class to query for base-paired partners as well as base pair and base step parameters.
 
file  DNAParameters.hh
 A class to query for base-paired partners as well as base pair and base step parameters.
 
file  PDBOutput.cc
 
file  PDBOutput.fwd.hh
 
file  PDBOutput.hh
 
file  RestrictDesignToProteinDNAInterface.cc
 
file  RestrictDesignToProteinDNAInterface.fwd.hh
 
file  RestrictDesignToProteinDNAInterface.hh
 When operated on a PackerTask, pack/design is limited to the protein-DNA interface.
 
file  RestrictDesignToProteinDNAInterfaceCreator.hh
 
file  RotamerDNAHBondFilter.cc
 filters rotamers for contact to DNA in an -ex dependent manner
 
file  RotamerDNAHBondFilter.fwd.hh
 filters rotamers for contact to DNA in an -ex dependent manner
 
file  RotamerDNAHBondFilter.hh
 when passed to a PackerTask, filters rotamers for contact to DNA in an -ex dependent manner
 
file  SeparateDnaFromNonDna.cc
 
file  SeparateDnaFromNonDna.fwd.hh
 
file  SeparateDnaFromNonDna.hh
 
file  SeparateDnaFromNonDnaCreator.hh
 
file  typedefs.hh
 non-class and non-pointer typedefs for this namespace
 
file  util.cc
 
file  util.hh
 
file  WatsonCrickRotamerCouplings.cc
 
file  WatsonCrickRotamerCouplings.fwd.hh
 
file  WatsonCrickRotamerCouplings.hh
 When operated on a PackerTask, adds RotamerCouplings to it that will trigger the use of a FixbbCoupledRotamerAnnealer by pack_rotamers, which will make base-paired DNA rotamer substitutions.
 
file  WatsonCrickRotamerCouplingsCreator.hh