Rosetta Protocols  2014.35
scores Directory Reference
Directory dependency graph for scores:
src/protocols/frag_picker/scores

Files

file  ABEGO_SS_Score.cc
 scores a fragment by secondary structure similarity
 
file  ABEGO_SS_Score.hh
 scores a fragment by secondary structure similarity
 
file  AdaptiveScoreHistogram.cc
 
file  AdaptiveScoreHistogram.fwd.hh
 AdaptiveScoreHistogram forward declaration.
 
file  AdaptiveScoreHistogram.hh
 A very basic histogram to keep statistics of scores.
 
file  AmbigCSScore.cc
 Object that scores a fragment by target-observed/vall-predicted chemical shift distances.
 
file  AmbigCSScore.hh
 Object that scores a fragment by its crmsd to the native.
 
file  AtomBasedConstraintsScore.cc
 
file  AtomBasedConstraintsScore.fwd.hh
 AtomBasedConstraintsScore forward declaration.
 
file  AtomBasedConstraintsScore.hh
 
file  AtomPairConstraintsScore.cc
 
file  AtomPairConstraintsScore.fwd.hh
 FragmentScoreManager forward declaration.
 
file  AtomPairConstraintsScore.hh
 
file  BFactor.cc
 a base class for fragment scoring
 
file  BFactor.hh
 a base class for fragment scoring
 
file  CachingScoringMethod.hh
 adds cashing functionality to a FragmentScoringMethod object
 
file  ConstScore.hh
 score that adds a constant (so basically it does nothing!)
 
file  CSScore.cc
 Object that scores a fragment by target-observed/vall-predicted chemical shift distances.
 
file  CSScore.hh
 Object that scores a fragment by its crmsd to the native.
 
file  DihedralConstraintsScore.cc
 Calculates a score based on how close are dihdral angles in a Vall chunk to their target values.
 
file  DihedralConstraintsScore.fwd.hh
 DihedralConstraintsScore forward declaration.
 
file  DihedralConstraintsScore.hh
 
file  DisulfideDistance.cc
 Scores fragments by disulfide-linke Calpha distances.
 
file  DisulfideDistance.hh
 Scores fragments by disulfide-linke Calpha distances.
 
file  DisulfideIdentity.cc
 a base class for fragment scoring
 
file  DisulfideIdentity.hh
 a base class for fragment scoring
 
file  FourAtomsConstraintData.cc
 provides a holder for data necessary to create a single constraint based on four atoms
 
file  FourAtomsConstraintData.fwd.hh
 DihedralConstraintsScore forward declaration.
 
file  FourAtomsConstraintData.hh
 provides a holder for data necessary to create a single constraint based on four atoms
 
file  fragment_scoring_utilities.cc
 functions and data types common for fragment scoring
 
file  fragment_scoring_utilities.hh
 functions and data types common for fragment scoring
 
file  FragmentAllAtomCrmsd.cc
 Object that scores a fragment by its crmsd to the native.
 
file  FragmentAllAtomCrmsd.hh
 Object that scores a fragment by its crmsd to the native.
 
file  FragmentChunkCrms.cc
 
file  FragmentChunkCrms.hh
 Object that scores a fragment by its tmscore to the native.
 
file  FragmentCrmsd.cc
 Object that scores a fragment by its crmsd to the native.
 
file  FragmentCrmsd.hh
 Object that scores a fragment by its crmsd to the native.
 
file  FragmentCrmsdResDepth.cc
 Object that scores a fragment by its crmsd to the native.
 
file  FragmentCrmsdResDepth.hh
 Object that scores a fragment by its crmsd and residue depth to the native.
 
file  FragmentDME.cc
 Object that scores a fragment by its Distance Matrix Error (DME) to the native.
 
file  FragmentDME.hh
 Object that scores a fragment by its Distance Matrix Error (DME) to the native.
 
file  FragmentScoreManager.cc
 
file  FragmentScoreManager.fwd.hh
 FragmentScoreManager forward declaration.
 
file  FragmentScoreManager.hh
 Score manager.
 
file  FragmentScoreMap.fwd.hh
 FragmentScoreMap forward declaration.
 
file  FragmentScoreMap.hh
 
file  FragmentScoringMethod.fwd.hh
 FragmentScoringMethod forward declaration.
 
file  FragmentScoringMethod.hh
 a base class for fragment scoring
 
file  GunnCost.cc
 
file  GunnCost.hh
 
file  GunnCostScore.cc
 Object that scores a fragment by its crmsd to the native.
 
file  GunnCostScore.hh
 Object that scores a fragment by Gunn cost function (how it fits to the local structure)
 
file  HydrophobicityProfileSimilarity.cc
 a base class for fragment scoring
 
file  HydrophobicityProfileSimilarity.hh
 Object that scores a fragment by hydrophobicity.
 
file  HydrophobicitySimilarity.cc
 a base class for fragment scoring
 
file  HydrophobicitySimilarity.hh
 Object that scores a fragment by hydrophobicity.
 
file  InterbondAngleScore.cc
 
file  InterbondAngleScore.fwd.hh
 DihedralConstraintsScore forward declaration.
 
file  InterbondAngleScore.hh
 
file  JCoupling.cc
 Object that scores a fragment by root mean square deviation of Phi && Psi dihedrals.
 
file  JCoupling.hh
 Object that scores a fragment by its crmsd to the native.
 
file  LAMBEGO_Similarity.cc
 
file  LAMBEGO_Similarity.hh
 scores a fragment based on scores for a probability over torsion bins.
 
file  MidPhiOut.cc
 Object that scores a fragment by root mean square deviation of Phi && Psi dihedrals.
 
file  MidPhiOut.hh
 Object that scores a fragment by its crmsd to the native.
 
file  MidPsiOut.cc
 Object that scores a fragment by root mean square deviation of Psi && Psi dihedrals.
 
file  MidPsiOut.hh
 Object that scores a fragment by its crmsd to the native.
 
file  PartialSecondarySimilarity.cc
 scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches
 
file  PartialSecondarySimilarity.hh
 scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches
 
file  PCS_FragDistance.cc
 Scores fragments by disulfide-linke Calpha distances.
 
file  PCS_FragDistance.hh
 Scores fragments by disulfide-linke Calpha distances.
 
file  Phi.cc
 a base class for fragment scoring
 
file  Phi.hh
 Object that scores a fragment by predicted Phi torsions.
 
file  PhiPsiRmsd.cc
 Object that scores a fragment by root mean square deviation of Phi && Psi dihedrals.
 
file  PhiPsiRmsd.hh
 Object that scores a fragment by its crmsd to the native.
 
file  PhiPsiSquareWell.cc
 Object that scores a fragment by root mean square deviation of Phi && Psi dihedrals.
 
file  PhiPsiSquareWell.hh
 Object that scores a fragment by its crmsd to the native.
 
file  ProfileScore.cc
 scores a fragment by an amino acid sequence identity
 
file  ProfileScore.fwd.hh
 FragmentScoringMethod forward declaration.
 
file  ProfileScore.hh
 scores a fragment by an amino acid sequence identity
 
file  ProfileScoreBlosum62.cc
 scores a fragment by an amino acid sequence identity
 
file  ProfileScoreBlosum62.hh
 scores a fragment by Blosum62 profile score
 
file  ProfileScoreDistWeight.cc
 scores a fragment by weighting L1 profile distances by residue type
 
file  ProfileScoreDistWeight.hh
 scores a fragment by weighting L1 profile distances by residue type
 
file  ProfileScoreL1.cc
 scores a fragment by an amino acid sequence identity
 
file  ProfileScoreL1.hh
 scores a fragment by L1 profile score
 
file  ProfileScoreStructL1.cc
 scores a fragment using structure based profiles
 
file  ProfileScoreStructL1.hh
 scores a fragment by L1 structure based profile score
 
file  ProfileScoreSubMatrix.cc
 scores a fragment by substitution matrix (e.g. Blosum62) profile score
 
file  ProfileScoreSubMatrix.hh
 scores a fragment by substitution matrix (e.g. Blosum62) profile score
 
file  ProlinePhiScore.cc
 a base class for fragment scoring
 
file  ProlinePhiScore.hh
 a base class for fragment scoring
 
file  Psi.cc
 a base class for fragment scoring
 
file  Psi.hh
 Object that scores a fragment by predicted Psi torsions.
 
file  PValuedFragmentScoreManager.cc
 
file  PValuedFragmentScoreManager.hh
 Score manager that stores statistics of all scores. This allows estimate p-value for a score.
 
file  RamaScore.cc
 Ramachandran surface scores for fragment picking.
 
file  RamaScore.hh
 a base class for fragment scoring
 
file  RDCScore.cc
 Object that scores a fragment by its RDC.
 
file  RDCScore.hh
 Object that scores a fragment by its crmsd to the native.
 
file  RDCScore_Gront.cc
 
file  RDCScore_Gront.fwd.hh
 RDCScore forward declaration.
 
file  RDCScore_Gront.hh
 
file  ScoreEValuator.cc
 scores a fragment by an amino acid sequence identity
 
file  ScoreEValuator.hh
 Object that scores a fragment by its crmsd to the native.
 
file  SecondaryIdentity.cc
 scores a fragment by an amino acid sequence identity
 
file  SecondaryIdentity.hh
 scores a fragment by an amino acid sequence identity
 
file  SecondarySimilarity.cc
 scores a fragment by secondary structure similarity
 
file  SecondarySimilarity.hh
 scores a fragment by secondary structure similarity
 
file  SequenceIdentity.cc
 a base class for fragment scoring
 
file  SequenceIdentity.hh
 a base class for fragment scoring
 
file  SolventAccessibility.cc
 a base class for fragment scoring
 
file  SolventAccessibility.hh
 Object that scores a fragment by predicted solvent accessibility.
 
file  TalosSSSimilarity.cc
 scores a fragment by secondary structure similarity
 
file  TalosSSSimilarity.hh
 scores a fragment by secondary structure similarity
 
file  TorsionBinSimilarity.cc
 
file  TorsionBinSimilarity.hh
 scores a fragment based on scores for a probability over torsion bins.