Rosetta Protocols  2014.35
docking Directory Reference
Directory dependency graph for docking:
src/protocols/docking

Directories

directory  membrane
 
directory  stateless
 

Files

file  ConformerSwitchMover.cc
 code for the conformer switch mover in ensemble docking
 
file  ConformerSwitchMover.fwd.hh
 ConformerSwitchMover forward declarations header.
 
file  ConformerSwitchMover.hh
 code for the conformer switch mover in ensemble docking
 
file  ConformerSwitchMoverCreator.hh
 
file  DockFilters.cc
 filters for docking
 
file  DockFilters.fwd.hh
 forward declarations for low-res docking
 
file  DockFilters.hh
 Filters for docking.
 
file  DockingEnsemble.cc
 container class for ensemble docking information to be used with ConformerSwitchMover
 
file  DockingEnsemble.fwd.hh
 DockingEnsemble forward declarations header.
 
file  DockingEnsemble.hh
 container class for ensemble docking information to be used with ConformerSwitchMover
 
file  DockingEnsemblePrepackProtocol.cc
 Prepacking of the bound structure before docking with ensembles.
 
file  DockingEnsemblePrepackProtocol.fwd.hh
 
file  DockingEnsemblePrepackProtocol.hh
 Prepacking of the bound structure before docking with ensembles.
 
file  DockingHighRes.cc
 protocols that are specific to high resolution docking
 
file  DockingHighRes.fwd.hh
 forward declarations for low-res docking
 
file  DockingHighRes.hh
 initialization protocols for docking
 
file  DockingHighResLegacy.cc
 protocols that are specific to high resolution docking
 
file  DockingHighResLegacy.fwd.hh
 forward declarations for DockingHighResLegacy (high resolution docking protocol as it existed in mini before the GrayLab refactor)
 
file  DockingHighResLegacy.hh
 initialization protocols for docking
 
file  DockingInitialPerturbation.cc
 initial position functions
 
file  DockingInitialPerturbation.fwd.hh
 
file  DockingInitialPerturbation.hh
 initialization protocols for docking
 
file  DockingInitialPerturbationCreator.hh
 
file  DockingLowRes.cc
 protocols that are specific to docking low resolution
 
file  DockingLowRes.fwd.hh
 forward declarations for low-res docking
 
file  DockingLowRes.hh
 low resolution mode for docking
 
file  DockingLowResEnsemble.cc
 protocols that are specific to low resolution ensemble docking
 
file  DockingLowResEnsemble.fwd.hh
 forward declarations for low-res ensemble docking
 
file  DockingLowResEnsemble.hh
 low resolution mode for ensemble docking
 
file  DockingPrepackProtocol.cc
 Prepacking of the bound sturcture before docking.
 
file  DockingPrepackProtocol.fwd.hh
 
file  DockingPrepackProtocol.hh
 Prepacking of the bound structure before docking.
 
file  DockingProtocol.cc
 
file  DockingProtocol.fwd.hh
 
file  DockingProtocol.hh
 
file  DockingProtocolCreator.hh
 Declaration of the MoverCreator class for the DockAndRetrieveSidechains.
 
file  DockMCMCycle.cc
 protocols that are specific to high resolution docking
 
file  DockMCMCycle.fwd.hh
 forward declarations for DockMCMCycle (high resolution min) docking
 
file  DockMCMCycle.hh
 initialization protocols for docking
 
file  DockMCMProtocol.cc
 protocols that are specific to high resolution docking
 
file  DockMCMProtocol.fwd.hh
 forward declarations for DockMCMProtocol (high resolution min) docking
 
file  DockMCMProtocol.hh
 initialization protocols for docking
 
file  DockMinMover.cc
 
file  DockMinMover.fwd.hh
 forward declarations for DockMinMover (high resolution min) docking
 
file  DockMinMover.hh
 
file  DockSetupMover.cc
 
file  DockSetupMover.fwd.hh
 
file  DockSetupMover.hh
 allows low-resolution docking using simulated or parallel tempering
 
file  DockSetupMoverCreator.hh
 Declaration of the MoverCreator class for the DockAndRetrieveSidechains.
 
file  DockTaskFactory.cc
 sets up the task factory for docking movers
 
file  DockTaskFactory.fwd.hh
 forward declarations for DockTaskFactory
 
file  DockTaskFactory.hh
 sets up the task factory for docking movers
 
file  EllipsoidalRandomizationMover.cc
 
file  EllipsoidalRandomizationMover.fwd.hh
 forward declarations for EllipsoidalRandomizationMover (docking initial placement mover)
 
file  EllipsoidalRandomizationMover.hh
 
file  metrics.cc
 protocols that are specific to docking low resolution
 
file  metrics.hh
 protocols that are specific to docking low resolution
 
file  RigidBodyInfo.cc
 
file  RigidBodyInfo.fwd.hh
 
file  RigidBodyInfo.hh
 
file  SidechainMinMover.cc
 
file  SidechainMinMover.fwd.hh
 
file  SidechainMinMover.hh
 
file  TemperedDocking.cc
 low resolution docking using parallel or simulated tempering
 
file  TemperedDocking.fwd.hh
 
file  TemperedDocking.hh
 allows low-resolution docking using simulated or parallel tempering
 
file  TemperedDockingCreator.hh
 Declaration of the MoverCreator class for the DockAndRetrieveSidechains.
 
file  types.hh
 Additionl types for Docking protocol.
 
file  util.cc
 
file  util.hh
 protocols that are specific to docking low resolution