Rosetta Protocols  2014.35
metal_interface Directory Reference
Directory dependency graph for metal_interface:
src/protocols/metal_interface

Files

file  AddZincSiteConstraints.cc
 Adds metal binding site geometry constraints to pose.
 
file  AddZincSiteConstraints.fwd.hh
 AddZincSiteConstraints protocol-mover forward declarations header.
 
file  AddZincSiteConstraints.hh
 Adds metal binding site geometry constraints to pose.
 
file  FindClosestAtom.cc
 Finds the closest atom in a given residue to a point (usually a zinc atom).
 
file  FindClosestAtom.hh
 Finds the closest atom in a given residue to a point (usually a zinc atom).
 
file  MatchGrafter.cc
 Takes a scaffold protein and a match pdb from RosettaMatch, grafts the match onto the protein. For zinc homodimer design, it can then combine two grafted poses by overlaying the zinc atoms.
 
file  MatchGrafter.fwd.hh
 MatchGrafter protocol-mover forward declarations header.
 
file  MatchGrafter.hh
 Takes a scaffold protein and a match pdb from RosettaMatch, grafts the match onto the protein. For zinc homodimer design, it can then combine two grafted poses by overlaying the zinc atoms.
 
file  MetalSiteResidue.cc
 Stores data that describes a metal-coordinating residue.
 
file  MetalSiteResidue.fwd.hh
 MetalSiteResidue protocol-mover forward declarations header.
 
file  MetalSiteResidue.hh
 Stores data that describes a metal-coordinating residue.
 
file  ZincHeterodimerMover.cc
 ZincHeterodimerMover methods implemented - see apps/pilot/rjha/README for details.
 
file  ZincHeterodimerMover.fwd.hh
 ZincHeterodimerMover protocol-mover forward declarations header.
 
file  ZincHeterodimerMover.hh
 ZincHeterodimerMover protocol main mover.
 
file  ZincSiteFinder.cc
 Searches pose for a zinc residue, then fills a vector of MetalSiteResidue objects with info including sequence position of coordinating sidechains, ligand atom xyz, ligand atom name, and atom ids to provide a convenient way for protocols to add metalsite constraints (ligand refers to protein sidechains)
 
file  ZincSiteFinder.fwd.hh
 ZincSiteFinder protocol-mover forward declarations header.
 
file  ZincSiteFinder.hh
 Searches pose for a zinc residue, then fills a vector of MetalSiteResidue objects with info including sequence position of coordinating sidechains, ligand atom xyz, ligand atom name, and atom ids to provide a convenient way for protocols to add metalsite constraints (ligand refers to protein sidechains)