Rosetta Protocols  2014.35
ligand_docking Directory Reference
Directory dependency graph for ligand_docking:
src/protocols/ligand_docking

Directories

directory  ligand_options
 
directory  rdf
 

Files

file  AddHydrogen.cc
 Lemmon
 
file  AddHydrogen.fwd.hh
 
file  AddHydrogen.hh
 
file  AddHydrogens.cc
 Lemmon
 
file  AddHydrogens.fwd.hh
 
file  AddHydrogens.hh
 
file  AddHydrogensCreator.hh
 This class will create instances of Mover AddHydrogens for the MoverFactory.
 
file  AtomCountFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  AtomCountFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  AtomCountFilterCreator.hh
 FilterCreator for the AtomCountFilter.
 
file  ChainExistsFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  ChainExistsFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  ChainExistsFilterCreator.hh
 FilterCreator for the ChainExistsFilter.
 
file  CompleteConnectionsFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  CompleteConnectionsFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  CompleteConnectionsFilterCreator.hh
 FilterCreator for the CompleteConnectionsFilter.
 
file  CompoundTranslate.cc
 
file  CompoundTranslate.hh
 
file  CompoundTranslateCreator.hh
 This class will create instances of Mover CompoundTranslateCreator for the MoverFactory.
 
file  ComputeLigandRDF.cc
 A mover for computing RDF functions.
 
file  ComputeLigandRDF.fwd.hh
 
file  ComputeLigandRDF.hh
 header file for ComputeLigandRDF mover
 
file  ComputeLigandRDFCreator.hh
 
file  DistributionMap.cc
 enumerate some distributions and map them to strings
 
file  DistributionMap.hh
 enumerate some distributions and map them to strings
 
file  FinalMinimizer.cc
 implementation of resfile reader and its command classes
 
file  FinalMinimizer.fwd.hh
 
file  FinalMinimizer.hh
 header of classes for resfile options
 
file  FinalMinimizerCreator.hh
 This class will create instances of Mover FinalMinimizerCreator for the MoverFactory.
 
file  grid_functions.cc
 
file  grid_functions.hh
 
file  GrowLigand.cc
 Lemmon
 
file  GrowLigand.fwd.hh
 
file  GrowLigand.hh
 
file  GrowLigandCreator.hh
 This class will create instances of Mover GrowLigand for the MoverFactory.
 
file  HBondAcceptorFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  HBondAcceptorFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  HBondAcceptorFilterCreator.hh
 FilterCreator for the HBondAcceptorFilter.
 
file  HBondDonorFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  HBondDonorFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  HBondDonorFilterCreator.hh
 FilterCreator for the HBondDonorFilter.
 
file  HeavyAtomFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  HeavyAtomFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  HeavyAtomFilterCreator.hh
 FilterCreator for the HeavyAtomFilter.
 
file  HighResDocker.cc
 implementation of resfile reader and its command classes
 
file  HighResDocker.fwd.hh
 
file  HighResDocker.hh
 header of classes for resfile options
 
file  HighResDockerCreator.hh
 This class will create instances of Mover HighResDockerCreator for the MoverFactory.
 
file  InterfaceBuilder.cc
 implementation of resfile reader and its command classes
 
file  InterfaceBuilder.fwd.hh
 Makes an interface.
 
file  InterfaceBuilder.hh
 header of classes for resfile options
 
file  InterfaceScoreCalculator.cc
 
file  InterfaceScoreCalculator.fwd.hh
 
file  InterfaceScoreCalculator.hh
 
file  InterfaceScoreCalculatorCreator.hh
 This class will create instances of Mover InterfaceScoreCalculator for the MoverFactory.
 
file  ligand_dock_impl.cc
 
file  ligand_dock_impl.hh
 
file  ligand_functions.cc
 
file  ligand_functions.hh
 
file  ligand_scores.cc
 Lemmon
 
file  ligand_scores.hh
 
file  LigandArea.cc
 implementation of resfile reader and its command classes
 
file  LigandArea.fwd.hh
 Makes an interface.
 
file  LigandArea.hh
 header of classes for resfile options
 
file  LigandBaseProtocol.cc
 
file  LigandBaseProtocol.hh
 
file  LigandDesign.cc
 Lemmon
 
file  LigandDesign.fwd.hh
 
file  LigandDesign.hh
 
file  LigandDesignCreator.hh
 This class will create instances of Mover LigandDesign for the MoverFactory.
 
file  LigandDockingLoaderCreators.hh
 Creator classes for the ligand docking DataLoader classes: InterfaceBuilderLoader and MoveMapBuilderLoader.
 
file  LigandDockingLoaders.cc
 Implementation of the InterfaceBuilderLoader and MoveMapBuilderLoader classes.
 
file  LigandDockingLoaders.hh
 Declartion of the InterfaceBuilderLoader and MoveMapBuilderLoader classes for adding named InterfaceBuilders and MoveMapBuilders into the parser's basic::datacache::DataMap.
 
file  LigandDockProtocol.cc
 
file  LigandDockProtocol.fwd.hh
 
file  LigandDockProtocol.hh
 
file  MinimizeBackbone.cc
 implementation of resfile reader and its command classes
 
file  MinimizeBackbone.fwd.hh
 
file  MinimizeBackbone.hh
 header of classes for resfile options
 
file  MinimizeBackboneCreator.hh
 This class will create instances of Mover MinimizeBackboneCreator for the MoverFactory.
 
file  MinimizeLigand.cc
 implementation of resfile reader and its command classes
 
file  MinimizeLigand.fwd.hh
 
file  MinimizeLigand.hh
 header of classes for resfile options
 
file  MolarMassFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  MolarMassFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  MolarMassFilterCreator.hh
 FilterCreator for the MolarMassFilter.
 
file  MolecularMassFilter.cc
 Find packing defects at an interface using packstat score terms.
 
file  MolecularMassFilter.hh
 Find packing defects at an interface using packstat score terms.
 
file  MolecularMassFilterCreator.hh
 FilterCreator for the MolecularMassFilter.
 
file  MoveMapBuilder.cc
 implementation of resfile reader and its command classes
 
file  MoveMapBuilder.fwd.hh
 
file  MoveMapBuilder.hh
 header of classes for resfile options
 
file  RandomConformerMover.cc
 
file  RandomConformerMover.fwd.hh
 
file  RandomConformerMover.hh
 
file  RandomConformers.cc
 implementation of resfile reader and its command classes
 
file  RandomConformers.hh
 this class chooses a random conformer for every residue in a specified chain
 
file  RandomConformersCreator.hh
 This class will create instances of Mover RandomConformersCreator for the MoverFactory.
 
file  ResidueTorsionRestraints.cc
 
file  ResidueTorsionRestraints.fwd.hh
 
file  ResidueTorsionRestraints.hh
 
file  RigidSearchMover.cc
 
file  RigidSearchMover.fwd.hh
 
file  RigidSearchMover.hh
 
file  Rotate.cc
 implementation of resfile reader and its command classes
 
file  Rotate.fwd.hh
 
file  Rotate.hh
 header of classes for resfile options
 
file  RotateCreator.hh
 This class will create instances of Mover Rotate for the MoverFactory.
 
file  Rotates.cc
 implementation of resfile reader and its command classes
 
file  Rotates.fwd.hh
 
file  Rotates.hh
 header of classes for resfile options
 
file  RotatesCreator.hh
 This class will create instances of Mover Rotates for the MoverFactory.
 
file  ScreeningDocker.cc
 
file  ScreeningDocker.fwd.hh
 
file  ScreeningDocker.hh
 
file  ScreeningDockerCreator.hh
 
file  SlideTogether.cc
 implementation of resfile reader and its command classes
 
file  SlideTogether.hh
 header of classes for resfile options
 
file  SlideTogetherCreator.hh
 This class will create instances of Mover SlideTogether for the MoverFactory.
 
file  StartFrom.cc
 implementation of resfile reader and its command classes
 
file  StartFrom.fwd.hh
 
file  StartFrom.hh
 header of classes for resfile options
 
file  StartFromCreator.hh
 This class will create instances of Mover StartFrom for the MoverFactory.
 
file  TetherLigand.cc
 implementation of resfile reader and its command classes
 
file  TetherLigand.fwd.hh
 
file  TetherLigand.hh
 header of classes for resfile options
 
file  Transform.cc
 
file  Transform.fwd.hh
 
file  Transform.hh
 
file  TransformCreator.hh
 This class will create instances of Mover Transform for the MoverFactory.
 
file  Translate.cc
 implementation of resfile reader and its command classes
 
file  Translate.fwd.hh
 
file  Translate.hh
 header of classes for resfile options
 
file  TranslateCreator.hh
 This class will create instances of Mover Translate for the MoverFactory.
 
file  UnconstrainedTorsionsMover.cc
 
file  UnconstrainedTorsionsMover.fwd.hh
 
file  UnconstrainedTorsionsMover.hh
 
file  WriteLigandMolFile.cc
 Ligand MolFile writer.
 
file  WriteLigandMolFile.fwd.hh
 forward header class for Ligand MolFile writer
 
file  WriteLigandMolFile.hh
 header class for Ligand MolFile writer
 
file  WriteLigandMolFileCreator.hh
 This class will create instances of Mover WriteLigandMolFile for the MoverFactory.