Rosetta Protocols  2014.35
matdes Directory Reference
Directory dependency graph for matdes:
src/protocols/matdes

Files

file  BuildingBlockInterfaceOperation.cc
 Restrict design to only residues at inter-building block interfaces.
 
file  BuildingBlockInterfaceOperation.fwd.hh
 Restrict design to only residues at inter-building block interfaces.
 
file  BuildingBlockInterfaceOperation.hh
 Restrict design to only residues at inter-building block interfaces.
 
file  BuildingBlockInterfaceOperationCreator.hh
 Restrict design to only residues at inter-building block interfaces.
 
file  ClashCheckFilter.cc
 Checks to see if any residues defined by the TaskOperations have clashing CA/CBs between interfaces (building block aware).
 
file  ClashCheckFilter.fwd.hh
 
file  ClashCheckFilter.hh
 header file for ClashCheckFilter class
 
file  ClashCheckFilterCreator.hh
 FilterCreator for the ClashCheckFilter.
 
file  ExtractSubposeMover.cc
 Extract primary component associated with symdofs and all neighboring components. Note: Currently just dumps extracted PDB and does not modify pose.
 
file  ExtractSubposeMover.fwd.hh
 Extract primary component associated with symdofs and all neighboring components.
 
file  ExtractSubposeMover.hh
 Extract primary component associated with symdofs and all neighboring components.
 
file  ExtractSubposeMoverCreator.hh
 Extract primary component associated with symdofs and all neighboring components.
 
file  GetRBDOFValues.cc
 Returns the translation and angle for movable jump.
 
file  GetRBDOFValues.fwd.hh
 
file  GetRBDOFValues.hh
 header file for GetRBDOFValues class
 
file  GetRBDOFValuesCreator.hh
 FilterCreator for the GetRBDOFValues.
 
file  InterfacePackingFilter.cc
 
file  InterfacePackingFilter.fwd.hh
 forward declaration for InterfacePackingFilter
 
file  InterfacePackingFilter.hh
 Calculates the RosettaHoles score for the atoms within a user-defined cutoff distance (default = 9.0) of the subpose interface. Filters based on lower and upper thresholds, which are set to -/+5 by default.
 
file  InterfacePackingFilterCreator.hh
 FilterCreators for the InterfacePackingFilter.
 
file  MatDesGreedyOptMutationMover.cc
 
file  MatDesGreedyOptMutationMover.fwd.hh
 This is a modified version of Chris King's GreedyOptMutationMover with additional functionality that is currently not compatible with all of the ParetoOpt functionality. Please note that this has been checked into master in its current state in response to requests from others to use this modified version of Chris King's GreedyOptMutationMover. Although this is still a somewhat developmental piece of code, it has currently been left in src/protocols/matdes/ to avoid issues with intra-library level dependencies.
 
file  MatDesGreedyOptMutationMover.hh
 This is a modified version of Chris King's GreedyOptMutationMover with additional functionality that is currently not compatible with all of the ParetoOpt functionality. Please note that this has been checked into master in its current state in response to requests from others to use this modified version of Chris King's GreedyOptMutationMover. Although this is still a somewhat developmental piece of code, it has currently been left in src/protocols/matdes/ to avoid issues with intra-library level dependencies.
 
file  MatDesGreedyOptMutationMoverCreator.hh
 
file  MatDesPointMutationCalculator.cc
 
file  MatDesPointMutationCalculator.fwd.hh
 this is a modified version of chris king's PointMutationCalculator with additional functionality that is currently not compatible with all of the ParetoOpt functionality. please note that this has been checked into master in its current state in response to requests from others to use this modified version of chris king's GreedyOptMutationMover. although this is still a somewhat developmental piece of code, it has currently been left in src/protocols/matdes/ to avoid issues with intra-library level dependencies.
 
file  MatDesPointMutationCalculator.hh
 this is a modified version of chris king's PointMutationCalculator with additional functionality that is currently not compatible with all of the ParetoOpt functionality. please note that this has been checked into master in its current state in response to requests from others to use this modified version of chris king's GreedyOptMutationMover. although this is still a somewhat developmental piece of code, it has currently been left in src/protocols/matdes/ to avoid issues with intra-library level dependencies.
 
file  OligomericAverageDegreeFilter.cc
 Calculates AverageDegree within the context of an unbound oligomer.
 
file  OligomericAverageDegreeFilter.fwd.hh
 
file  OligomericAverageDegreeFilter.hh
 header file for OligomericAverageDegreeFilter class
 
file  OligomericAverageDegreeFilterCreator.hh
 FilterCreator for the OligomericAverageDegreeFilter.
 
file  SymDofMover.cc
 
file  SymDofMover.fwd.hh
 
file  SymDofMover.hh
 
file  SymDofMoverCreator.hh
 
file  SymDofMoverSampler.cc
 
file  SymDofMoverSampler.hh
 
file  SymUnsatHbondFilter.cc
 Determine the number of unsatified hydrogen bonds at an interface Works with both symmetric and asymmetric poses.
 
file  SymUnsatHbondFilter.fwd.hh
 
file  SymUnsatHbondFilter.hh
 definition of filter class SymUnsatHbondFilter.
 
file  SymUnsatHbondFilterCreator.hh
 FilterCreators for the SymUnsatHbondFilterCreator.