basic::options::OptionKeys::cluster Namespace Reference

Functions
BooleanOptionKey const	cluster ("cluster")
BooleanOptionKey const	lite ("cluster:lite")
RealOptionKey const	input_score_filter ("cluster:input_score_filter")
RealOptionKey const	output_score_filter ("cluster:output_score_filter")
IntegerVectorOptionKey const	exclude_res ("cluster:exclude_res")
RealOptionKey const	thinout_factor ("cluster:thinout_factor")
RealOptionKey const	radius ("cluster:radius")
IntegerOptionKey const	limit_cluster_size ("cluster:limit_cluster_size")
RealOptionKey const	limit_cluster_size_percent ("cluster:limit_cluster_size_percent")
RealOptionKey const	random_limit_cluster_size_percent ("cluster:random_limit_cluster_size_percent")
IntegerOptionKey const	limit_clusters ("cluster:limit_clusters")
IntegerOptionKey const	limit_total_structures ("cluster:limit_total_structures")
IntegerOptionKey const	max_total_cluster ("cluster:max_total_cluster")
BooleanOptionKey const	gdtmm ("cluster:gdtmm")
BooleanOptionKey const	sort_groups_by_energy ("cluster:sort_groups_by_energy")
BooleanOptionKey const	sort_groups_by_size ("cluster:sort_groups_by_size")
BooleanOptionKey const	remove_singletons ("cluster:remove_singletons")
BooleanOptionKey const	export_only_low ("cluster:export_only_low")
BooleanOptionKey const	remove_highest_energy_member ("cluster:remove_highest_energy_member")
BooleanOptionKey const	idealize_final_structures ("cluster:idealize_final_structures")
IntegerOptionKey const	limit_dist_matrix ("cluster:limit_dist_matrix")
BooleanOptionKey const	make_ensemble_cst ("cluster:make_ensemble_cst")
BooleanOptionKey const	hotspot_hash ("cluster:hotspot_hash")
BooleanOptionKey const	loops ("cluster:loops")
RealOptionKey const	population_weight ("cluster:population_weight")
StringOptionKey const	template_scores ("cluster:template_scores")
IntegerOptionKey const	K_level ("cluster:K_level")
RealVectorOptionKey const	K_radius ("cluster:K_radius")
IntegerVectorOptionKey const	K_n_cluster ("cluster:K_n_cluster")
StringVectorOptionKey const	K_style ("cluster:K_style")
IntegerOptionKey const	K_n_sub ("cluster:K_n_sub")
IntegerOptionKey const	K_deque_size ("cluster:K_deque_size")
IntegerOptionKey const	K_deque_level ("cluster:K_deque_level")
BooleanOptionKey const	K_redundant ("cluster:K_redundant")
BooleanOptionKey const	K_not_fit_xyz ("cluster:K_not_fit_xyz")
BooleanOptionKey const	K_save_headers ("cluster:K_save_headers")
RealOptionKey const	score_diff_cut ("cluster:score_diff_cut")
BooleanOptionKey const	auto_tune ("cluster:auto_tune")

Variables
BooleanOptionKey const	cluster
BooleanOptionKey const	lite
RealOptionKey const	input_score_filter
RealOptionKey const	output_score_filter
IntegerVectorOptionKey const	exclude_res
RealOptionKey const	thinout_factor
RealOptionKey const	radius
IntegerOptionKey const	limit_cluster_size
RealOptionKey const	limit_cluster_size_percent
RealOptionKey const	random_limit_cluster_size_percent
IntegerOptionKey const	limit_clusters
IntegerOptionKey const	limit_total_structures
IntegerOptionKey const	max_total_cluster
BooleanOptionKey const	gdtmm
BooleanOptionKey const	sort_groups_by_energy
BooleanOptionKey const	sort_groups_by_size
BooleanOptionKey const	remove_singletons
BooleanOptionKey const	export_only_low
BooleanOptionKey const	remove_highest_energy_member
BooleanOptionKey const	idealize_final_structures
IntegerOptionKey const	limit_dist_matrix
BooleanOptionKey const	make_ensemble_cst
BooleanOptionKey const	hotspot_hash
BooleanOptionKey const	loops
RealOptionKey const	population_weight
StringOptionKey const	template_scores
IntegerOptionKey const	K_level
RealVectorOptionKey const	K_radius
IntegerVectorOptionKey const	K_n_cluster
StringVectorOptionKey const	K_style
IntegerOptionKey const	K_n_sub
IntegerOptionKey const	K_deque_size
IntegerOptionKey const	K_deque_level
BooleanOptionKey const	K_redundant
BooleanOptionKey const	K_not_fit_xyz
BooleanOptionKey const	K_save_headers
RealOptionKey const	score_diff_cut
BooleanOptionKey const	auto_tune

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune

(

"cluster:auto_tune"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::cluster

(

"cluster"

)

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res

(

"cluster:exclude_res"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low

(

"cluster:export_only_low"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm

(

"cluster:gdtmm"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash

(

"cluster:hotspot_hash"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures

(

"cluster:idealize_final_structures"

)

RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter

(

"cluster:input_score_filter"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level

(

"cluster:K_deque_level"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size

(

"cluster:K_deque_size"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::K_level

(

"cluster:K_level"

)

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster

(

"cluster:K_n_cluster"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub

(

"cluster:K_n_sub"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz

(

"cluster:K_not_fit_xyz"

)

RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius

(

"cluster:K_radius"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant

(

"cluster:K_redundant"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers

(

"cluster:K_save_headers"

)

StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style

(

"cluster:K_style"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size

(

"cluster:limit_cluster_size"

)

RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent

(

"cluster:limit_cluster_size_percent"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters

(

"cluster:limit_clusters"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix

(

"cluster:limit_dist_matrix"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures

(

"cluster:limit_total_structures"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::lite

(

"cluster:lite"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::loops

(

"cluster:loops"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst

(

"cluster:make_ensemble_cst"

)

IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster

(

"cluster:max_total_cluster"

)

RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter

(

"cluster:output_score_filter"

)

RealOptionKey const basic::options::OptionKeys::cluster::population_weight

(

"cluster:population_weight"

)

RealOptionKey const basic::options::OptionKeys::cluster::radius

(

"cluster:radius"

)

RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent

(

"cluster:random_limit_cluster_size_percent"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member

(

"cluster:remove_highest_energy_member"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons

(

"cluster:remove_singletons"

)

RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut

(

"cluster:score_diff_cut"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy

(

"cluster:sort_groups_by_energy"

)

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size

(

"cluster:sort_groups_by_size"

)

StringOptionKey const basic::options::OptionKeys::cluster::template_scores

(

"cluster:template_scores"

)

RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor

(

"cluster:thinout_factor"

)

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune("cluster:auto_tune")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::cluster("cluster")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res("cluster:exclude_res")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low("cluster:export_only_low")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm("cluster:gdtmm")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash("cluster:hotspot_hash")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures("cluster:idealize_final_structures")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter("cluster:input_score_filter")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level("cluster:K_deque_level")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size("cluster:K_deque_size")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_level("cluster:K_level")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster("cluster:K_n_cluster")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub("cluster:K_n_sub")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz("cluster:K_not_fit_xyz")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius("cluster:K_radius")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant("cluster:K_redundant")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers("cluster:K_save_headers")

Referenced by add_rosetta_options_1().

StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style("cluster:K_style")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size("cluster:limit_cluster_size")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent("cluster:limit_cluster_size_percent")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters("cluster:limit_clusters")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix("cluster:limit_dist_matrix")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures("cluster:limit_total_structures")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::lite("cluster:lite")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::loops("cluster:loops")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst("cluster:make_ensemble_cst")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster("cluster:max_total_cluster")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter("cluster:output_score_filter")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::population_weight("cluster:population_weight")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::radius("cluster:radius")

Referenced by add_rosetta_options_1(), numeric::geometry::hashing::xyzStripeHash::init(), numeric::geometry::hashing::SixDOffsetTree::insert(), basic::sampling::orientations::QuaternionGridManager::request_by_radius(), and numeric::geometry::hashing::SixDOffsetTree::sum_radius().

RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent("cluster:random_limit_cluster_size_percent")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member("cluster:remove_highest_energy_member")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons("cluster:remove_singletons")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut("cluster:score_diff_cut")

Referenced by add_rosetta_options_1(), and add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy("cluster:sort_groups_by_energy")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size("cluster:sort_groups_by_size")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::cluster::template_scores("cluster:template_scores")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor("cluster:thinout_factor")

Referenced by add_rosetta_options_1().