Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::cluster Namespace Reference

Functions

BooleanOptionKey const cluster ("cluster")
 
BooleanOptionKey const lite ("cluster:lite")
 
RealOptionKey const input_score_filter ("cluster:input_score_filter")
 
RealOptionKey const output_score_filter ("cluster:output_score_filter")
 
IntegerVectorOptionKey const exclude_res ("cluster:exclude_res")
 
RealOptionKey const thinout_factor ("cluster:thinout_factor")
 
RealOptionKey const radius ("cluster:radius")
 
IntegerOptionKey const limit_cluster_size ("cluster:limit_cluster_size")
 
RealOptionKey const limit_cluster_size_percent ("cluster:limit_cluster_size_percent")
 
RealOptionKey const random_limit_cluster_size_percent ("cluster:random_limit_cluster_size_percent")
 
IntegerOptionKey const limit_clusters ("cluster:limit_clusters")
 
IntegerOptionKey const limit_total_structures ("cluster:limit_total_structures")
 
IntegerOptionKey const max_total_cluster ("cluster:max_total_cluster")
 
BooleanOptionKey const gdtmm ("cluster:gdtmm")
 
BooleanOptionKey const sort_groups_by_energy ("cluster:sort_groups_by_energy")
 
BooleanOptionKey const sort_groups_by_size ("cluster:sort_groups_by_size")
 
BooleanOptionKey const remove_singletons ("cluster:remove_singletons")
 
BooleanOptionKey const export_only_low ("cluster:export_only_low")
 
BooleanOptionKey const remove_highest_energy_member ("cluster:remove_highest_energy_member")
 
BooleanOptionKey const idealize_final_structures ("cluster:idealize_final_structures")
 
IntegerOptionKey const limit_dist_matrix ("cluster:limit_dist_matrix")
 
BooleanOptionKey const make_ensemble_cst ("cluster:make_ensemble_cst")
 
BooleanOptionKey const hotspot_hash ("cluster:hotspot_hash")
 
BooleanOptionKey const loops ("cluster:loops")
 
RealOptionKey const population_weight ("cluster:population_weight")
 
StringOptionKey const template_scores ("cluster:template_scores")
 
IntegerOptionKey const K_level ("cluster:K_level")
 
RealVectorOptionKey const K_radius ("cluster:K_radius")
 
IntegerVectorOptionKey const K_n_cluster ("cluster:K_n_cluster")
 
StringVectorOptionKey const K_style ("cluster:K_style")
 
IntegerOptionKey const K_n_sub ("cluster:K_n_sub")
 
IntegerOptionKey const K_deque_size ("cluster:K_deque_size")
 
IntegerOptionKey const K_deque_level ("cluster:K_deque_level")
 
BooleanOptionKey const K_redundant ("cluster:K_redundant")
 
BooleanOptionKey const K_not_fit_xyz ("cluster:K_not_fit_xyz")
 
BooleanOptionKey const K_save_headers ("cluster:K_save_headers")
 
RealOptionKey const score_diff_cut ("cluster:score_diff_cut")
 
BooleanOptionKey const auto_tune ("cluster:auto_tune")
 

Variables

BooleanOptionKey const cluster
 
BooleanOptionKey const lite
 
RealOptionKey const input_score_filter
 
RealOptionKey const output_score_filter
 
IntegerVectorOptionKey const exclude_res
 
RealOptionKey const thinout_factor
 
RealOptionKey const radius
 
IntegerOptionKey const limit_cluster_size
 
RealOptionKey const limit_cluster_size_percent
 
RealOptionKey const random_limit_cluster_size_percent
 
IntegerOptionKey const limit_clusters
 
IntegerOptionKey const limit_total_structures
 
IntegerOptionKey const max_total_cluster
 
BooleanOptionKey const gdtmm
 
BooleanOptionKey const sort_groups_by_energy
 
BooleanOptionKey const sort_groups_by_size
 
BooleanOptionKey const remove_singletons
 
BooleanOptionKey const export_only_low
 
BooleanOptionKey const remove_highest_energy_member
 
BooleanOptionKey const idealize_final_structures
 
IntegerOptionKey const limit_dist_matrix
 
BooleanOptionKey const make_ensemble_cst
 
BooleanOptionKey const hotspot_hash
 
BooleanOptionKey const loops
 
RealOptionKey const population_weight
 
StringOptionKey const template_scores
 
IntegerOptionKey const K_level
 
RealVectorOptionKey const K_radius
 
IntegerVectorOptionKey const K_n_cluster
 
StringVectorOptionKey const K_style
 
IntegerOptionKey const K_n_sub
 
IntegerOptionKey const K_deque_size
 
IntegerOptionKey const K_deque_level
 
BooleanOptionKey const K_redundant
 
BooleanOptionKey const K_not_fit_xyz
 
BooleanOptionKey const K_save_headers
 
RealOptionKey const score_diff_cut
 
BooleanOptionKey const auto_tune
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune ( "cluster:auto_tune"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::cluster ( "cluster"  )
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res ( "cluster:exclude_res"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low ( "cluster:export_only_low"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm ( "cluster:gdtmm"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash ( "cluster:hotspot_hash"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures ( "cluster:idealize_final_structures"  )
RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter ( "cluster:input_score_filter"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level ( "cluster:K_deque_level"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size ( "cluster:K_deque_size"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::K_level ( "cluster:K_level"  )
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster ( "cluster:K_n_cluster"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub ( "cluster:K_n_sub"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz ( "cluster:K_not_fit_xyz"  )
RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius ( "cluster:K_radius"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant ( "cluster:K_redundant"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers ( "cluster:K_save_headers"  )
StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style ( "cluster:K_style"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size ( "cluster:limit_cluster_size"  )
RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent ( "cluster:limit_cluster_size_percent"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters ( "cluster:limit_clusters"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix ( "cluster:limit_dist_matrix"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures ( "cluster:limit_total_structures"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::lite ( "cluster:lite"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::loops ( "cluster:loops"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst ( "cluster:make_ensemble_cst"  )
IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster ( "cluster:max_total_cluster"  )
RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter ( "cluster:output_score_filter"  )
RealOptionKey const basic::options::OptionKeys::cluster::population_weight ( "cluster:population_weight"  )
RealOptionKey const basic::options::OptionKeys::cluster::radius ( "cluster:radius"  )
RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent ( "cluster:random_limit_cluster_size_percent"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member ( "cluster:remove_highest_energy_member"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons ( "cluster:remove_singletons"  )
RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut ( "cluster:score_diff_cut"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy ( "cluster:sort_groups_by_energy"  )
BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size ( "cluster:sort_groups_by_size"  )
StringOptionKey const basic::options::OptionKeys::cluster::template_scores ( "cluster:template_scores"  )
RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor ( "cluster:thinout_factor"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune("cluster:auto_tune")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::cluster("cluster")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res("cluster:exclude_res")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low("cluster:export_only_low")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm("cluster:gdtmm")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash("cluster:hotspot_hash")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures("cluster:idealize_final_structures")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter("cluster:input_score_filter")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level("cluster:K_deque_level")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size("cluster:K_deque_size")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_level("cluster:K_level")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster("cluster:K_n_cluster")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub("cluster:K_n_sub")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz("cluster:K_not_fit_xyz")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius("cluster:K_radius")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant("cluster:K_redundant")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers("cluster:K_save_headers")

Referenced by add_rosetta_options_1().

StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style("cluster:K_style")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size("cluster:limit_cluster_size")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent("cluster:limit_cluster_size_percent")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters("cluster:limit_clusters")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix("cluster:limit_dist_matrix")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures("cluster:limit_total_structures")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::lite("cluster:lite")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::loops("cluster:loops")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst("cluster:make_ensemble_cst")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster("cluster:max_total_cluster")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter("cluster:output_score_filter")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::population_weight("cluster:population_weight")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::radius("cluster:radius")
RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent("cluster:random_limit_cluster_size_percent")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member("cluster:remove_highest_energy_member")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons("cluster:remove_singletons")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut("cluster:score_diff_cut")
BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy("cluster:sort_groups_by_energy")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size("cluster:sort_groups_by_size")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::cluster::template_scores("cluster:template_scores")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor("cluster:thinout_factor")

Referenced by add_rosetta_options_1().