Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::in Namespace Reference

Namespaces

 dbms
 
 file
 
 path
 
 rdf
 

Functions

BooleanOptionKey const in ("in")
 
StringOptionKey const Ntermini ("in:Ntermini")
 
StringOptionKey const Ctermini ("in:Ctermini")
 
BooleanOptionKey const use_truncated_termini ("in:use_truncated_termini")
 
BooleanOptionKey const ignore_unrecognized_res ("in:ignore_unrecognized_res")
 
BooleanOptionKey const ignore_waters ("in:ignore_waters")
 
BooleanOptionKey const add_orbitals ("in:add_orbitals")
 
BooleanOptionKey const show_all_fixes ("in:show_all_fixes")
 
BooleanOptionKey const include_sugars ("in:include_sugars")
 
BooleanOptionKey const include_lipids ("in:include_lipids")
 
BooleanOptionKey const include_surfaces ("in:include_surfaces")
 
BooleanOptionKey const membrane ("in:membrane")
 
BooleanOptionKey const remember_unrecognized_res ("in:remember_unrecognized_res")
 
BooleanOptionKey const remember_unrecognized_water ("in:remember_unrecognized_water")
 
BooleanOptionKey const preserve_crystinfo ("in:preserve_crystinfo")
 
BooleanOptionKey const detect_oops ("in:detect_oops")
 
BooleanOptionKey const detect_disulf ("in:detect_disulf")
 
RealOptionKey const detect_disulf_tolerance ("in:detect_disulf_tolerance")
 
BooleanOptionKey const auto_setup_metals ("in:auto_setup_metals")
 
RealOptionKey const metals_detection_LJ_multiplier ("in:metals_detection_LJ_multiplier")
 
RealOptionKey const metals_distance_constraint_multiplier ("in:metals_distance_constraint_multiplier")
 
RealOptionKey const metals_angle_constraint_multiplier ("in:metals_angle_constraint_multiplier")
 
FileOptionKey const fix_disulf ("in:fix_disulf")
 
BooleanOptionKey const missing_density_to_jump ("in:missing_density_to_jump")
 
IntegerVectorOptionKey const target_residues ("in:target_residues")
 
IntegerVectorOptionKey const replonly_residues ("in:replonly_residues")
 
BooleanOptionKey const replonly_loops ("in:replonly_loops")
 
BooleanOptionKey const use_database ("in:use_database")
 
StringVectorOptionKey const select_structures_from_database ("in:select_structures_from_database")
 

Variables

BooleanOptionKey const in
 
StringOptionKey const Ntermini
 
StringOptionKey const Ctermini
 
BooleanOptionKey const use_truncated_termini
 
BooleanOptionKey const ignore_unrecognized_res
 
BooleanOptionKey const ignore_waters
 
BooleanOptionKey const add_orbitals
 
BooleanOptionKey const show_all_fixes
 
BooleanOptionKey const include_sugars
 
BooleanOptionKey const include_lipids
 
BooleanOptionKey const include_surfaces
 
BooleanOptionKey const membrane
 
BooleanOptionKey const remember_unrecognized_res
 
BooleanOptionKey const remember_unrecognized_water
 
BooleanOptionKey const preserve_crystinfo
 
BooleanOptionKey const detect_oops
 
BooleanOptionKey const detect_disulf
 
RealOptionKey const detect_disulf_tolerance
 
BooleanOptionKey const auto_setup_metals
 
RealOptionKey const metals_detection_LJ_multiplier
 
RealOptionKey const metals_distance_constraint_multiplier
 
RealOptionKey const metals_angle_constraint_multiplier
 
FileOptionKey const fix_disulf
 
BooleanOptionKey const missing_density_to_jump
 
IntegerVectorOptionKey const target_residues
 
IntegerVectorOptionKey const replonly_residues
 
BooleanOptionKey const replonly_loops
 
BooleanOptionKey const use_database
 
StringVectorOptionKey const select_structures_from_database
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals ( "in:add_orbitals"  )
BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals ( "in:auto_setup_metals"  )
StringOptionKey const basic::options::OptionKeys::in::Ctermini ( "in:Ctermini"  )
BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf ( "in:detect_disulf"  )
RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance ( "in:detect_disulf_tolerance"  )
BooleanOptionKey const basic::options::OptionKeys::in::detect_oops ( "in:detect_oops"  )
FileOptionKey const basic::options::OptionKeys::in::fix_disulf ( "in:fix_disulf"  )
BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res ( "in:ignore_unrecognized_res"  )
BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters ( "in:ignore_waters"  )
BooleanOptionKey const basic::options::OptionKeys::in::in ( "in"  )
BooleanOptionKey const basic::options::OptionKeys::in::include_lipids ( "in:include_lipids"  )
BooleanOptionKey const basic::options::OptionKeys::in::include_sugars ( "in:include_sugars"  )
BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces ( "in:include_surfaces"  )
BooleanOptionKey const basic::options::OptionKeys::in::membrane ( "in:membrane"  )
RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier ( "in:metals_angle_constraint_multiplier"  )
RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier ( "in:metals_detection_LJ_multiplier"  )
RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier ( "in:metals_distance_constraint_multiplier"  )
BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump ( "in:missing_density_to_jump"  )
StringOptionKey const basic::options::OptionKeys::in::Ntermini ( "in:Ntermini"  )
BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo ( "in:preserve_crystinfo"  )
BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res ( "in:remember_unrecognized_res"  )
BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water ( "in:remember_unrecognized_water"  )
BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops ( "in:replonly_loops"  )
IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues ( "in:replonly_residues"  )
StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database ( "in:select_structures_from_database"  )
BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes ( "in:show_all_fixes"  )
IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues ( "in:target_residues"  )
BooleanOptionKey const basic::options::OptionKeys::in::use_database ( "in:use_database"  )
BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini ( "in:use_truncated_termini"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals("in:add_orbitals")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals("in:auto_setup_metals")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ctermini("in:Ctermini")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf("in:detect_disulf")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance("in:detect_disulf_tolerance")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_oops("in:detect_oops")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::in::fix_disulf("in:fix_disulf")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res("in:ignore_unrecognized_res")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters("in:ignore_waters")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::in("in")
BooleanOptionKey const basic::options::OptionKeys::in::include_lipids("in:include_lipids")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_sugars("in:include_sugars")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces("in:include_surfaces")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::membrane("in:membrane")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier("in:metals_angle_constraint_multiplier")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier("in:metals_detection_LJ_multiplier")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier("in:metals_distance_constraint_multiplier")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump("in:missing_density_to_jump")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ntermini("in:Ntermini")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo("in:preserve_crystinfo")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res("in:remember_unrecognized_res")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water("in:remember_unrecognized_water")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops("in:replonly_loops")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues("in:replonly_residues")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database("in:select_structures_from_database")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes("in:show_all_fixes")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues("in:target_residues")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_database("in:use_database")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini("in:use_truncated_termini")

Referenced by add_rosetta_options_0().