basic::options::OptionKeys::evaluation Namespace Reference

Functions
BooleanOptionKey const	evaluation ("evaluation")
FileVectorOptionKey const	rmsd_target ("evaluation:rmsd_target")
StringVectorOptionKey const	rmsd_column ("evaluation:rmsd_column")
FileVectorOptionKey const	rmsd_select ("evaluation:rmsd_select")
FileVectorOptionKey const	align_rmsd_target ("evaluation:align_rmsd_target")
FileVectorOptionKey const	structural_similarity ("evaluation:structural_similarity")
BooleanOptionKey const	contact_map ("evaluation:contact_map")
StringVectorOptionKey const	jscore_evaluator ("evaluation:jscore_evaluator")
StringVectorOptionKey const	align_rmsd_column ("evaluation:align_rmsd_column")
FileVectorOptionKey const	align_rmsd_fns ("evaluation:align_rmsd_fns")
StringOptionKey const	align_rmsd_format ("evaluation:align_rmsd_format")
StringOptionKey const	predicted_burial_fn ("evaluation:predicted_burial_fn")
FileOptionKey const	pool ("evaluation:pool")
FileVectorOptionKey const	rmsd ("evaluation:rmsd")
FileVectorOptionKey const	chirmsd ("evaluation:chirmsd")
BooleanOptionKey const	gdtmm ("evaluation:gdtmm")
BooleanOptionKey const	gdttm ("evaluation:gdttm")
BooleanOptionKey const	score_with_rmsd ("evaluation:score_with_rmsd")
FileVectorOptionKey const	constraints ("evaluation:constraints")
FileVectorOptionKey const	constraints_column ("evaluation:constraints_column")
FileVectorOptionKey const	combined_constraints ("evaluation:combined_constraints")
FileVectorOptionKey const	combined_constraints_column ("evaluation:combined_constraints_column")
IntegerOptionKey const	combine_statistics ("evaluation:combine_statistics")
StringVectorOptionKey const	chemical_shifts ("evaluation:chemical_shifts")
StringOptionKey const	sparta_dir ("evaluation:sparta_dir")
StringVectorOptionKey const	cam_shifts ("evaluation:cam_shifts")
StringVectorOptionKey const	pales ("evaluation:pales")
FileVectorOptionKey const	extra_score ("evaluation:extra_score")
FileVectorOptionKey const	extra_score_patch ("evaluation:extra_score_patch")
StringVectorOptionKey const	extra_score_column ("evaluation:extra_score_column")
FileVectorOptionKey const	extra_score_select ("evaluation:extra_score_select")
FileVectorOptionKey const	rdc_target ("evaluation:rdc_target")
BooleanOptionKey const	symmetric_rmsd ("evaluation:symmetric_rmsd")
StringVectorOptionKey const	rdc_column ("evaluation:rdc_column")
StringVectorOptionKey const	rdc ("evaluation:rdc")
StringOptionKey const	built_in_rdc ("evaluation:built_in_rdc")
BooleanOptionKey const	jump_nr ("evaluation:jump_nr")
IntegerVectorOptionKey const	score_exclude_res ("evaluation:score_exclude_res")
IntegerOptionKey const	score_sscore_short_helix ("evaluation:score_sscore_short_helix")
IntegerOptionKey const	score_sscore_maxloop ("evaluation:score_sscore_maxloop")
IntegerOptionKey const	window_size ("evaluation:window_size")
StringOptionKey const	I_sc ("evaluation:I_sc")
BooleanOptionKey const	Irms ("evaluation:Irms")
BooleanOptionKey const	Ca_Irms ("evaluation:Ca_Irms")
BooleanOptionKey const	Fnat ("evaluation:Fnat")
BooleanOptionKey const	Lrmsd ("evaluation:Lrmsd")
BooleanOptionKey const	Fnonnat ("evaluation:Fnonnat")
BooleanOptionKey const	DockMetrics ("evaluation:DockMetrics")

Variables
BooleanOptionKey const	evaluation
FileVectorOptionKey const	rmsd_target
StringVectorOptionKey const	rmsd_column
FileVectorOptionKey const	rmsd_select
FileVectorOptionKey const	align_rmsd_target
FileVectorOptionKey const	structural_similarity
BooleanOptionKey const	contact_map
StringVectorOptionKey const	jscore_evaluator
StringVectorOptionKey const	align_rmsd_column
FileVectorOptionKey const	align_rmsd_fns
StringOptionKey const	align_rmsd_format
StringOptionKey const	predicted_burial_fn
FileOptionKey const	pool
FileVectorOptionKey const	rmsd
FileVectorOptionKey const	chirmsd
BooleanOptionKey const	gdtmm
BooleanOptionKey const	gdttm
BooleanOptionKey const	score_with_rmsd
FileVectorOptionKey const	constraints
FileVectorOptionKey const	constraints_column
FileVectorOptionKey const	combined_constraints
FileVectorOptionKey const	combined_constraints_column
IntegerOptionKey const	combine_statistics
StringVectorOptionKey const	chemical_shifts
StringOptionKey const	sparta_dir
StringVectorOptionKey const	cam_shifts
StringVectorOptionKey const	pales
FileVectorOptionKey const	extra_score
FileVectorOptionKey const	extra_score_patch
StringVectorOptionKey const	extra_score_column
FileVectorOptionKey const	extra_score_select
FileVectorOptionKey const	rdc_target
BooleanOptionKey const	symmetric_rmsd
StringVectorOptionKey const	rdc_column
StringVectorOptionKey const	rdc
StringOptionKey const	built_in_rdc
BooleanOptionKey const	jump_nr
IntegerVectorOptionKey const	score_exclude_res
IntegerOptionKey const	score_sscore_short_helix
IntegerOptionKey const	score_sscore_maxloop
IntegerOptionKey const	window_size
StringOptionKey const	I_sc
BooleanOptionKey const	Irms
BooleanOptionKey const	Ca_Irms
BooleanOptionKey const	Fnat
BooleanOptionKey const	Lrmsd
BooleanOptionKey const	Fnonnat
BooleanOptionKey const	DockMetrics

Function Documentation

StringVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_column

(

"evaluation:align_rmsd_column"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_fns

(

"evaluation:align_rmsd_fns"

)

StringOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_format

(

"evaluation:align_rmsd_format"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_target

(

"evaluation:align_rmsd_target"

)

StringOptionKey const basic::options::OptionKeys::evaluation::built_in_rdc

(

"evaluation:built_in_rdc"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::Ca_Irms

(

"evaluation:Ca_Irms"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::cam_shifts

(

"evaluation:cam_shifts"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::chemical_shifts

(

"evaluation:chemical_shifts"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::chirmsd

(

"evaluation:chirmsd"

)

IntegerOptionKey const basic::options::OptionKeys::evaluation::combine_statistics

(

"evaluation:combine_statistics"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::combined_constraints

(

"evaluation:combined_constraints"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::combined_constraints_column

(

"evaluation:combined_constraints_column"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::constraints

(

"evaluation:constraints"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::constraints_column

(

"evaluation:constraints_column"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::contact_map

(

"evaluation:contact_map"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::DockMetrics

(

"evaluation:DockMetrics"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::evaluation

(

"evaluation"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score

(

"evaluation:extra_score"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_column

(

"evaluation:extra_score_column"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_patch

(

"evaluation:extra_score_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_select

(

"evaluation:extra_score_select"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::Fnat

(

"evaluation:Fnat"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::Fnonnat

(

"evaluation:Fnonnat"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::gdtmm

(

"evaluation:gdtmm"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::gdttm

(

"evaluation:gdttm"

)

StringOptionKey const basic::options::OptionKeys::evaluation::I_sc

(

"evaluation:I_sc"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::Irms

(

"evaluation:Irms"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::jscore_evaluator

(

"evaluation:jscore_evaluator"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::jump_nr

(

"evaluation:jump_nr"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::Lrmsd

(

"evaluation:Lrmsd"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::pales

(

"evaluation:pales"

)

FileOptionKey const basic::options::OptionKeys::evaluation::pool

(

"evaluation:pool"

)

StringOptionKey const basic::options::OptionKeys::evaluation::predicted_burial_fn

(

"evaluation:predicted_burial_fn"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rdc

(

"evaluation:rdc"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rdc_column

(

"evaluation:rdc_column"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rdc_target

(

"evaluation:rdc_target"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd

(

"evaluation:rmsd"

)

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_column

(

"evaluation:rmsd_column"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_select

(

"evaluation:rmsd_select"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_target

(

"evaluation:rmsd_target"

)

IntegerVectorOptionKey const basic::options::OptionKeys::evaluation::score_exclude_res

(

"evaluation:score_exclude_res"

)

IntegerOptionKey const basic::options::OptionKeys::evaluation::score_sscore_maxloop

(

"evaluation:score_sscore_maxloop"

)

IntegerOptionKey const basic::options::OptionKeys::evaluation::score_sscore_short_helix

(

"evaluation:score_sscore_short_helix"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::score_with_rmsd

(

"evaluation:score_with_rmsd"

)

StringOptionKey const basic::options::OptionKeys::evaluation::sparta_dir

(

"evaluation:sparta_dir"

)

FileVectorOptionKey const basic::options::OptionKeys::evaluation::structural_similarity

(

"evaluation:structural_similarity"

)

BooleanOptionKey const basic::options::OptionKeys::evaluation::symmetric_rmsd

(

"evaluation:symmetric_rmsd"

)

IntegerOptionKey const basic::options::OptionKeys::evaluation::window_size

(

"evaluation:window_size"

)

Variable Documentation

StringVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_column("evaluation:align_rmsd_column")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_fns("evaluation:align_rmsd_fns")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_format("evaluation:align_rmsd_format")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::align_rmsd_target("evaluation:align_rmsd_target")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::evaluation::built_in_rdc("evaluation:built_in_rdc")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::Ca_Irms("evaluation:Ca_Irms")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::cam_shifts("evaluation:cam_shifts")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::chemical_shifts("evaluation:chemical_shifts")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::chirmsd("evaluation:chirmsd")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::evaluation::combine_statistics("evaluation:combine_statistics")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::combined_constraints("evaluation:combined_constraints")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::combined_constraints_column("evaluation:combined_constraints_column")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::constraints("evaluation:constraints")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::constraints_column("evaluation:constraints_column")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::contact_map("evaluation:contact_map")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::DockMetrics("evaluation:DockMetrics")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::evaluation("evaluation")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score("evaluation:extra_score")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_column("evaluation:extra_score_column")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_patch("evaluation:extra_score_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::extra_score_select("evaluation:extra_score_select")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::Fnat("evaluation:Fnat")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::Fnonnat("evaluation:Fnonnat")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::gdtmm("evaluation:gdtmm")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::gdttm("evaluation:gdttm")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::evaluation::I_sc("evaluation:I_sc")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::Irms("evaluation:Irms")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::jscore_evaluator("evaluation:jscore_evaluator")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::jump_nr("evaluation:jump_nr")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::Lrmsd("evaluation:Lrmsd")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::pales("evaluation:pales")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::evaluation::pool("evaluation:pool")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::evaluation::predicted_burial_fn("evaluation:predicted_burial_fn")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rdc("evaluation:rdc")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rdc_column("evaluation:rdc_column")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rdc_target("evaluation:rdc_target")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd("evaluation:rmsd")

Referenced by add_rosetta_options_0(), and add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_column("evaluation:rmsd_column")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_select("evaluation:rmsd_select")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::rmsd_target("evaluation:rmsd_target")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::evaluation::score_exclude_res("evaluation:score_exclude_res")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::evaluation::score_sscore_maxloop("evaluation:score_sscore_maxloop")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::evaluation::score_sscore_short_helix("evaluation:score_sscore_short_helix")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::score_with_rmsd("evaluation:score_with_rmsd")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::evaluation::sparta_dir("evaluation:sparta_dir")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::evaluation::structural_similarity("evaluation:structural_similarity")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::evaluation::symmetric_rmsd("evaluation:symmetric_rmsd")

Referenced by add_rosetta_options_0(), and add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::evaluation::window_size("evaluation:window_size")

Referenced by add_rosetta_options_0().