 |
Rosetta Utilities
2014.35
|
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Rosetta Utilities
2014.35
|
Functions | |
| BooleanOptionKey const | pb_potential::calcenergy ("pb_potential:calcenergy") |
| BooleanOptionKey const | PCS::PCS ("PCS") |
| FileOptionKey const | PCS::write_extra ("PCS:write_extra") |
| IntegerOptionKey const | PCS::normalization_id ("PCS:normalization_id") |
| BooleanOptionKey const | PCSTS1::PCSTS1 ("PCSTS1") |
| FileOptionKey const | PCSTS1::write_extra ("PCSTS1:write_extra") |
| IntegerOptionKey const | PCSTS1::normalization_id ("PCSTS1:normalization_id") |
| BooleanOptionKey const | PCSTS2::PCSTS2 ("PCSTS2") |
| FileOptionKey const | PCSTS2::write_extra ("PCSTS2:write_extra") |
| IntegerOptionKey const | PCSTS2::normalization_id ("PCSTS2:normalization_id") |
| BooleanOptionKey const | PCSTS3::PCSTS3 ("PCSTS3") |
| FileOptionKey const | PCSTS3::write_extra ("PCSTS3:write_extra") |
| IntegerOptionKey const | PCSTS3::normalization_id ("PCSTS3:normalization_id") |
| BooleanOptionKey const | PCSTS4::PCSTS4 ("PCSTS4") |
| FileOptionKey const | PCSTS4::write_extra ("PCSTS4:write_extra") |
| IntegerOptionKey const | PCSTS4::normalization_id ("PCSTS4:normalization_id") |
| BooleanOptionKey const | pepspec::pepspec ("pepspec") |
| StringOptionKey const | pepspec::soft_wts ("pepspec:soft_wts") |
| StringOptionKey const | pepspec::cen_wts ("pepspec:cen_wts") |
| BooleanOptionKey const | pepspec::binding_score ("pepspec:binding_score") |
| BooleanOptionKey const | pepspec::no_cen ("pepspec:no_cen") |
| BooleanOptionKey const | pepspec::no_cen_rottrials ("pepspec:no_cen_rottrials") |
| BooleanOptionKey const | pepspec::run_sequential ("pepspec:run_sequential") |
| IntegerOptionKey const | pepspec::pep_anchor ("pepspec:pep_anchor") |
| StringOptionKey const | pepspec::pep_chain ("pepspec:pep_chain") |
| IntegerOptionKey const | pepspec::n_peptides ("pepspec:n_peptides") |
| IntegerOptionKey const | pepspec::n_build_loop ("pepspec:n_build_loop") |
| IntegerOptionKey const | pepspec::n_cgrelax_loop ("pepspec:n_cgrelax_loop") |
| IntegerOptionKey const | pepspec::n_dock_loop ("pepspec:n_dock_loop") |
| RealOptionKey const | pepspec::interface_cutoff ("pepspec:interface_cutoff") |
| BooleanOptionKey const | pepspec::use_input_bb ("pepspec:use_input_bb") |
| BooleanOptionKey const | pepspec::remove_input_bb ("pepspec:remove_input_bb") |
| StringOptionKey const | pepspec::homol_csts ("pepspec:homol_csts") |
| RealOptionKey const | pepspec::p_homol_csts ("pepspec:p_homol_csts") |
| BooleanOptionKey const | pepspec::gen_pep_bb_sequential ("pepspec:gen_pep_bb_sequential") |
| StringOptionKey const | pepspec::input_seq ("pepspec:input_seq") |
| StringOptionKey const | pepspec::ss_type ("pepspec:ss_type") |
| BooleanOptionKey const | pepspec::upweight_interface ("pepspec:upweight_interface") |
| BooleanOptionKey const | pepspec::calc_sasa ("pepspec:calc_sasa") |
| BooleanOptionKey const | pepspec::diversify_pep_seqs ("pepspec:diversify_pep_seqs") |
| IntegerOptionKey const | pepspec::diversify_lvl ("pepspec:diversify_lvl") |
| BooleanOptionKey const | pepspec::dump_cg_bb ("pepspec:dump_cg_bb") |
| BooleanOptionKey const | pepspec::save_low_pdbs ("pepspec:save_low_pdbs") |
| BooleanOptionKey const | pepspec::save_all_pdbs ("pepspec:save_all_pdbs") |
| BooleanOptionKey const | pepspec::no_design ("pepspec:no_design") |
| StringOptionKey const | pepspec::pdb_list ("pepspec:pdb_list") |
| StringOptionKey const | pepspec::ref_pdb_list ("pepspec:ref_pdb_list") |
| BooleanOptionKey const | pepspec::add_buffer_res ("pepspec:add_buffer_res") |
| StringOptionKey const | pepspec::cg_res_type ("pepspec:cg_res_type") |
| IntegerOptionKey const | pepspec::native_pep_anchor ("pepspec:native_pep_anchor") |
| StringOptionKey const | pepspec::native_pep_chain ("pepspec:native_pep_chain") |
| BooleanOptionKey const | pepspec::native_align ("pepspec:native_align") |
| BooleanOptionKey const | pepspec::rmsd_analysis ("pepspec:rmsd_analysis") |
| StringOptionKey const | pepspec::anchor_type ("pepspec:anchor_type") |
| BooleanOptionKey const | pepspec::no_prepack_prot ("pepspec:no_prepack_prot") |
| BooleanOptionKey const | pepspec::prep_use_ref_rotamers ("pepspec:prep_use_ref_rotamers") |
| IntegerOptionKey const | pepspec::n_prepend ("pepspec:n_prepend") |
| IntegerOptionKey const | pepspec::n_append ("pepspec:n_append") |
| RealOptionKey const | pepspec::clash_cutoff ("pepspec:clash_cutoff") |
| RealOptionKey const | pepspec::n_anchor_dock_std_devs ("pepspec:n_anchor_dock_std_devs") |
| RealOptionKey const | pepspec::prep_trans_std_dev ("pepspec:prep_trans_std_dev") |
| RealOptionKey const | pepspec::prep_rot_std_dev ("pepspec:prep_rot_std_dev") |
| BooleanOptionKey const | pepspec::seq_align ("pepspec:seq_align") |
| StringOptionKey const | pepspec::prep_align_prot_to ("pepspec:prep_align_prot_to") |
| BooleanOptionKey const | pH::pH ("pH") |
| BooleanOptionKey const | pH::pH_mode ("pH:pH_mode") |
| BooleanOptionKey const | pH::keep_input_protonation_state ("pH:keep_input_protonation_state") |
| RealOptionKey const | pH::value_pH ("pH:value_pH") |
| BooleanOptionKey const | pH::calc_pka::calc_pka ("pH:calc_pka") |
| BooleanOptionKey const | pH::calc_pka::pka_all ("pH:calc_pka:pka_all") |
| RealVectorOptionKey const | pH::calc_pka::pka_for_resnos ("pH:calc_pka:pka_for_resnos") |
| StringOptionKey const | pH::calc_pka::pka_for_chainno ("pH:calc_pka:pka_for_chainno") |
| BooleanOptionKey const | pH::calc_pka::pH_neighbor_pack ("pH:calc_pka:pH_neighbor_pack") |
| RealOptionKey const | pH::calc_pka::pka_rad ("pH:calc_pka:pka_rad") |
| BooleanOptionKey const | pH::calc_pka::pH_prepack ("pH:calc_pka:pH_prepack") |
| BooleanOptionKey const | pH::calc_pka::pH_relax ("pH:calc_pka:pH_relax") |
| BooleanOptionKey const | pH::calc_pka::rotamer_prot_stats ("pH:calc_pka:rotamer_prot_stats") |
| FileVectorOptionKey const | pH::pH_unbound ("pH:pH_unbound") |
| BooleanOptionKey const | pH::output_raw_scores ("pH:output_raw_scores") |
| BooleanOptionKey const | pH::pre_process ("pH:pre_process") |
| StringOptionKey const | pH::cognate_partners ("pH:cognate_partners") |
| FileOptionKey const | pH::cognate_pdb ("pH:cognate_pdb") |
| BooleanOptionKey const | pocket_grid::pocket_grid ("pocket_grid") |
| RealOptionKey const | pocket_grid::pocket_grid_size ("pocket_grid:pocket_grid_size") |
| RealOptionKey const | pocket_grid::pocket_grid_size_x ("pocket_grid:pocket_grid_size_x") |
| RealOptionKey const | pocket_grid::pocket_grid_size_y ("pocket_grid:pocket_grid_size_y") |
| RealOptionKey const | pocket_grid::pocket_grid_size_z ("pocket_grid:pocket_grid_size_z") |
| RealOptionKey const | pocket_grid::pocket_grid_spacing ("pocket_grid:pocket_grid_spacing") |
| RealOptionKey const | pocket_grid::pocket_max_spacing ("pocket_grid:pocket_max_spacing") |
| RealOptionKey const | pocket_grid::pocket_min_size ("pocket_grid:pocket_min_size") |
| RealOptionKey const | pocket_grid::pocket_max_size ("pocket_grid:pocket_max_size") |
| RealOptionKey const | pocket_grid::pocket_probe_radius ("pocket_grid:pocket_probe_radius") |
| StringOptionKey const | pocket_grid::central_relax_pdb_num ("pocket_grid:central_relax_pdb_num") |
| IntegerOptionKey const | pocket_grid::pocket_ntrials ("pocket_grid:pocket_ntrials") |
| IntegerOptionKey const | pocket_grid::pocket_num_angles ("pocket_grid:pocket_num_angles") |
| BooleanOptionKey const | pocket_grid::pocket_side ("pocket_grid:pocket_side") |
| BooleanOptionKey const | pocket_grid::pocket_dump_pdbs ("pocket_grid:pocket_dump_pdbs") |
| BooleanOptionKey const | pocket_grid::pocket_dump_exemplars ("pocket_grid:pocket_dump_exemplars") |
| BooleanOptionKey const | pocket_grid::pocket_filter_by_exemplar ("pocket_grid:pocket_filter_by_exemplar") |
| BooleanOptionKey const | pocket_grid::pocket_restrict_size ("pocket_grid:pocket_restrict_size") |
| BooleanOptionKey const | pocket_grid::pocket_ignore_buried ("pocket_grid:pocket_ignore_buried") |
| BooleanOptionKey const | pocket_grid::pocket_only_buried ("pocket_grid:pocket_only_buried") |
| BooleanOptionKey const | pocket_grid::pocket_psp ("pocket_grid:pocket_psp") |
| BooleanOptionKey const | pocket_grid::pocket_sps ("pocket_grid:pocket_sps") |
| BooleanOptionKey const | pocket_grid::pocket_search13 ("pocket_grid:pocket_search13") |
| RealOptionKey const | pocket_grid::pocket_surface_score ("pocket_grid:pocket_surface_score") |
| RealOptionKey const | pocket_grid::pocket_surface_dist ("pocket_grid:pocket_surface_dist") |
| RealOptionKey const | pocket_grid::pocket_buried_score ("pocket_grid:pocket_buried_score") |
| RealOptionKey const | pocket_grid::pocket_buried_dist ("pocket_grid:pocket_buried_dist") |
| RealOptionKey const | pocket_grid::pocket_exemplar_vdw_pen ("pocket_grid:pocket_exemplar_vdw_pen") |
| BooleanOptionKey const | pocket_grid::print_grid ("pocket_grid:print_grid") |
| RealOptionKey const | pocket_grid::extra_eggshell_dist ("pocket_grid:extra_eggshell_dist") |
| RealOptionKey const | pocket_grid::eggshell_dist ("pocket_grid:eggshell_dist") |
| BooleanOptionKey const | pocket_grid::pocket_static_grid ("pocket_grid:pocket_static_grid") |
| BooleanOptionKey const | ProQ::ProQ ("ProQ") |
| IntegerOptionKey const | ProQ::svmmodel ("ProQ:svmmodel") |
| StringOptionKey const | ProQ::basename ("ProQ:basename") |
| BooleanOptionKey const | ProQ::membrane ("ProQ:membrane") |
| BooleanOptionKey const | ProQ::prof_bug ("ProQ:prof_bug") |
| BooleanOptionKey const | ProQ::output_feature_vector ("ProQ:output_feature_vector") |
| BooleanOptionKey const | ProQ::output_local_prediction ("ProQ:output_local_prediction") |
| StringOptionKey const | ProQ::prefix ("ProQ:prefix") |
| BooleanOptionKey const | ProQ::use_gzip ("ProQ:use_gzip") |
| RealOptionKey const | ProQ::normalize ("ProQ:normalize") |
| BooleanOptionKey const | qsar::qsar ("qsar") |
| StringOptionKey const | qsar::weights ("qsar:weights") |
| StringOptionKey const | qsar::grid_dir ("qsar:grid_dir") |
| IntegerOptionKey const | qsar::max_grid_cache_size ("qsar:max_grid_cache_size") |
| BooleanOptionKey const | rbe::rbe ("rbe") |
| StringOptionKey const | rbe::server_url ("rbe:server_url") |
| StringOptionKey const | rbe::server_port ("rbe:server_port") |
| RealOptionKey const | rbe::poll_frequency ("rbe:poll_frequency") |
| BooleanOptionKey const | RBSegmentRelax::RBSegmentRelax ("RBSegmentRelax") |
| FileOptionKey const | RBSegmentRelax::input_pdb ("RBSegmentRelax:input_pdb") |
| FileOptionKey const | RBSegmentRelax::rb_file ("RBSegmentRelax:rb_file") |
| IntegerOptionKey const | RBSegmentRelax::nrbmoves ("RBSegmentRelax:nrbmoves") |
| IntegerOptionKey const | RBSegmentRelax::nrboutercycles ("RBSegmentRelax:nrboutercycles") |
| StringOptionKey const | RBSegmentRelax::rb_scorefxn ("RBSegmentRelax:rb_scorefxn") |
| BooleanOptionKey const | RBSegmentRelax::skip_fragment_moves ("RBSegmentRelax:skip_fragment_moves") |
| BooleanOptionKey const | RBSegmentRelax::skip_seqshift_moves ("RBSegmentRelax:skip_seqshift_moves") |
| BooleanOptionKey const | RBSegmentRelax::skip_rb_moves ("RBSegmentRelax:skip_rb_moves") |
| RealVectorOptionKey const | RBSegmentRelax::helical_movement_params ("RBSegmentRelax:helical_movement_params") |
| RealVectorOptionKey const | RBSegmentRelax::strand_movement_params ("RBSegmentRelax:strand_movement_params") |
| RealVectorOptionKey const | RBSegmentRelax::default_movement_params ("RBSegmentRelax:default_movement_params") |
| IntegerOptionKey const | RBSegmentRelax::cst_seqwidth ("RBSegmentRelax:cst_seqwidth") |
| BooleanOptionKey const | rdc::rdc ("rdc") |
| BooleanOptionKey const | rdc::correct_NH_length ("rdc:correct_NH_length") |
| BooleanOptionKey const | rdc::reduced_couplings ("rdc:reduced_couplings") |
| FileOptionKey const | rdc::weights ("rdc:weights") |
| RealOptionKey const | rdc::iterate_weights ("rdc:iterate_weights") |
| FileOptionKey const | rdc::segment_file ("rdc:segment_file") |
| StringOptionKey const | rdc::segment_scoring_mode ("rdc:segment_scoring_mode") |
| RealOptionKey const | rdc::total_weight ("rdc:total_weight") |
| RealOptionKey const | rdc::tensor_weight ("rdc:tensor_weight") |
| FileOptionKey const | rdc::print_rdc_values ("rdc:print_rdc_values") |
| RealOptionKey const | rdc::iterate_tol ("rdc:iterate_tol") |
| BooleanOptionKey const | rdc::iterate_reset ("rdc:iterate_reset") |
| FileOptionKey const | rdc::dump_weight_trajectory ("rdc:dump_weight_trajectory") |
| RealVectorOptionKey const | rdc::fix_normAzz ("rdc:fix_normAzz") |
| StringOptionKey const | rdc::fit_method ("rdc:fit_method") |
| RealVectorOptionKey const | rdc::fixDa ("rdc:fixDa") |
| RealVectorOptionKey const | rdc::fixR ("rdc:fixR") |
| IntegerOptionKey const | rdc::nlsrepeat ("rdc:nlsrepeat") |
| BooleanOptionKey const | relax::relax ("relax") |
| BooleanOptionKey const | relax::fast ("relax:fast") |
| BooleanOptionKey const | relax::thorough ("relax:thorough") |
| BooleanOptionKey const | relax::centroid_mode ("relax:centroid_mode") |
| IntegerOptionKey const | relax::default_repeats ("relax:default_repeats") |
| BooleanOptionKey const | relax::dualspace ("relax:dualspace") |
| BooleanOptionKey const | relax::ramady ("relax:ramady") |
| RealOptionKey const | relax::ramady_rms_limit ("relax:ramady_rms_limit") |
| RealOptionKey const | relax::ramady_cutoff ("relax:ramady_cutoff") |
| IntegerOptionKey const | relax::ramady_max_rebuild ("relax:ramady_max_rebuild") |
| BooleanOptionKey const | relax::ramady_force ("relax:ramady_force") |
| FileOptionKey const | relax::script ("relax:script") |
| IntegerOptionKey const | relax::script_max_accept ("relax:script_max_accept") |
| BooleanOptionKey const | relax::superimpose_to_native ("relax:superimpose_to_native") |
| FileOptionKey const | relax::superimpose_to_file ("relax:superimpose_to_file") |
| BooleanOptionKey const | relax::constrain_relax_to_native_coords ("relax:constrain_relax_to_native_coords") |
| BooleanOptionKey const | relax::constrain_relax_to_start_coords ("relax:constrain_relax_to_start_coords") |
| BooleanOptionKey const | relax::coord_constrain_sidechains ("relax:coord_constrain_sidechains") |
| RealOptionKey const | relax::sc_cst_maxdist ("relax:sc_cst_maxdist") |
| BooleanOptionKey const | relax::limit_aroma_chi2 ("relax:limit_aroma_chi2") |
| BooleanOptionKey const | relax::respect_resfile ("relax:respect_resfile") |
| BooleanOptionKey const | relax::bb_move ("relax:bb_move") |
| BooleanOptionKey const | relax::chi_move ("relax:chi_move") |
| BooleanOptionKey const | relax::jump_move ("relax:jump_move") |
| BooleanOptionKey const | relax::dna_move ("relax:dna_move") |
| BooleanOptionKey const | relax::fix_omega ("relax:fix_omega") |
| BooleanOptionKey const | relax::minimize_bond_lengths ("relax:minimize_bond_lengths") |
| BooleanOptionKey const | relax::minimize_bond_angles ("relax:minimize_bond_angles") |
| IntegerOptionKey const | relax::minimize_bondlength_subset ("relax:minimize_bondlength_subset") |
| IntegerOptionKey const | relax::minimize_bondangle_subset ("relax:minimize_bondangle_subset") |
| StringOptionKey const | relax::min_type ("relax:min_type") |
| BooleanOptionKey const | relax::cartesian ("relax:cartesian") |
| RealOptionKey const | relax::chainbreak_weight ("relax:chainbreak_weight") |
| RealOptionKey const | relax::linear_chainbreak_weight ("relax:linear_chainbreak_weight") |
| RealOptionKey const | relax::overlap_chainbreak_weight ("relax:overlap_chainbreak_weight") |
| BooleanOptionKey const | relax::classic ("relax:classic") |
| FileOptionKey const | relax::sequence_file ("relax:sequence_file") |
| BooleanOptionKey const | relax::quick ("relax:quick") |
| BooleanOptionKey const | relax::sequence ("relax:sequence") |
| IntegerOptionKey const | relax::minirelax_repeats ("relax:minirelax_repeats") |
| RealOptionKey const | relax::minirelax_sdev ("relax:minirelax_sdev") |
| BooleanOptionKey const | relax::wobblemoves ("relax:wobblemoves") |
| FileOptionKey const | relax::constrain_relax_segments ("relax:constrain_relax_segments") |
| RealOptionKey const | relax::coord_cst_width ("relax:coord_cst_width") |
| RealOptionKey const | relax::coord_cst_stdev ("relax:coord_cst_stdev") |
| BooleanOptionKey const | relax::ramp_constraints ("relax:ramp_constraints") |
| RealOptionKey const | relax::energycut ("relax:energycut") |
| BooleanOptionKey const | relax::mini ("relax:mini") |
| IntegerOptionKey const | relax::stage1_ramp_cycles ("relax:stage1_ramp_cycles") |
| IntegerOptionKey const | relax::stage1_ramp_inner_cycles ("relax:stage1_ramp_inner_cycles") |
| IntegerOptionKey const | relax::stage2_repack_period ("relax:stage2_repack_period") |
| IntegerOptionKey const | relax::stage2_cycles ("relax:stage2_cycles") |
| RealOptionKey const | relax::min_tolerance ("relax:min_tolerance") |
| IntegerOptionKey const | relax::stage3_cycles ("relax:stage3_cycles") |
| RealOptionKey const | relax::cycle_ratio ("relax:cycle_ratio") |
| RealOptionKey const | relax::filter_stage2_beginning ("relax:filter_stage2_beginning") |
| RealOptionKey const | relax::filter_stage2_quarter ("relax:filter_stage2_quarter") |
| RealOptionKey const | relax::filter_stage2_half ("relax:filter_stage2_half") |
| RealOptionKey const | relax::filter_stage2_end ("relax:filter_stage2_end") |
| BooleanOptionKey const | relax::centroid::centroid ("relax:centroid") |
| StringOptionKey const | relax::centroid::weights ("relax:centroid:weights") |
| BooleanOptionKey const | relax::centroid::ramp_vdw ("relax:centroid:ramp_vdw") |
| BooleanOptionKey const | relax::centroid::ramp_rama ("relax:centroid:ramp_rama") |
| StringOptionKey const | relax::centroid::parameters ("relax:centroid:parameters") |
| BooleanOptionKey const | relax::centroid::do_final_repack ("relax:centroid:do_final_repack") |
| BooleanOptionKey const | relax::centroid::increase_vdw_radii ("relax:centroid:increase_vdw_radii") |
| BooleanOptionKey const | remodel::remodel ("remodel") |
| FileOptionKey const | remodel::blueprint ("remodel:blueprint") |
| IntegerOptionKey const | remodel::cstfilter ("remodel:cstfilter") |
| StringOptionKey const | remodel::cen_sfxn ("remodel:cen_sfxn") |
| BooleanOptionKey const | remodel::check_scored_centroid ("remodel:check_scored_centroid") |
| IntegerOptionKey const | remodel::num_trajectory ("remodel:num_trajectory") |
| IntegerOptionKey const | remodel::save_top ("remodel:save_top") |
| BooleanOptionKey const | remodel::swap_refine_confirm_protocols ("remodel:swap_refine_confirm_protocols") |
| BooleanOptionKey const | remodel::bypass_fragments ("remodel:bypass_fragments") |
| BooleanOptionKey const | remodel::use_same_length_fragments ("remodel:use_same_length_fragments") |
| BooleanOptionKey const | remodel::no_jumps ("remodel:no_jumps") |
| BooleanOptionKey const | remodel::use_blueprint_sequence ("remodel:use_blueprint_sequence ") |
| BooleanOptionKey const | remodel::quick_and_dirty ("remodel:quick_and_dirty ") |
| BooleanOptionKey const | remodel::checkpoint ("remodel:checkpoint ") |
| BooleanOptionKey const | remodel::use_pose_relax ("remodel:use_pose_relax ") |
| BooleanOptionKey const | remodel::use_cart_relax ("remodel:use_cart_relax ") |
| BooleanOptionKey const | remodel::free_relax ("remodel:free_relax ") |
| StringOptionKey const | remodel::generic_aa ("remodel:generic_aa") |
| RealOptionKey const | remodel::cluster_radius ("remodel:cluster_radius") |
| BooleanOptionKey const | remodel::use_clusters ("remodel:use_clusters") |
| BooleanOptionKey const | remodel::run_confirmation ("remodel:run_confirmation") |
| BooleanOptionKey const | remodel::cluster_on_entire_pose ("remodel:cluster_on_entire_pose") |
| IntegerOptionKey const | remodel::dr_cycles ("remodel:dr_cycles") |
| IntegerOptionKey const | remodel::two_chain_tree ("remodel:two_chain_tree") |
| IntegerOptionKey const | remodel::repeat_structure ("remodel:repeat_structure") |
| IntegerOptionKey const | remodel::lh_ex_limit ("remodel:lh_ex_limit") |
| StringVectorOptionKey const | remodel::lh_filter_string ("remodel:lh_filter_string") |
| IntegerOptionKey const | remodel::lh_cbreak_selection ("remodel:lh_cbreak_selection") |
| BooleanOptionKey const | remodel::lh_closure_filter ("remodel:lh_closure_filter") |
| BooleanOptionKey const | remodel::cen_minimize ("remodel:cen_minimize") |
| IntegerOptionKey const | remodel::core_cutoff ("remodel:core_cutoff") |
| IntegerOptionKey const | remodel::boundary_cutoff ("remodel:boundary_cutoff") |
| BooleanOptionKey const | remodel::resclass_by_sasa ("remodel:resclass_by_sasa") |
| RealOptionKey const | remodel::helical_rise ("remodel:helical_rise") |
| RealOptionKey const | remodel::helical_radius ("remodel:helical_radius") |
| RealOptionKey const | remodel::helical_omega ("remodel:helical_omega") |
| RealOptionKey const | remodel::COM_sd ("remodel:COM_sd") |
| RealOptionKey const | remodel::COM_tolerance ("remodel:COM_tolerance") |
| RealOptionKey const | remodel::vdw ("remodel:vdw") |
| RealOptionKey const | remodel::rama ("remodel:rama") |
| RealOptionKey const | remodel::cbeta ("remodel:cbeta") |
| RealOptionKey const | remodel::cenpack ("remodel:cenpack") |
| RealOptionKey const | remodel::rg_local ("remodel:rg_local") |
| RealOptionKey const | remodel::hb_lrbb ("remodel:hb_lrbb") |
| RealOptionKey const | remodel::hb_srbb ("remodel:hb_srbb") |
| RealOptionKey const | remodel::rg ("remodel:rg") |
| RealOptionKey const | remodel::rsigma ("remodel:rsigma") |
| RealOptionKey const | remodel::ss_pair ("remodel:ss_pair") |
| BooleanOptionKey const | remodel::build_disulf ("remodel:build_disulf") |
| RealOptionKey const | remodel::match_rt_limit ("remodel:match_rt_limit") |
| IntegerVectorOptionKey const | remodel::disulf_landing_range ("remodel:disulf_landing_range") |
| BooleanOptionKey const | remodel::staged_sampling::staged_sampling ("remodel:staged_sampling") |
| FileOptionKey const | remodel::staged_sampling::residues_to_sample ("remodel:staged_sampling:residues_to_sample") |
| StringOptionKey const | remodel::staged_sampling::starting_sequence ("remodel:staged_sampling:starting_sequence") |
| FileOptionKey const | remodel::staged_sampling::starting_pdb ("remodel:staged_sampling:starting_pdb") |
| BooleanOptionKey const | remodel::staged_sampling::require_frags_match_blueprint ("remodel:staged_sampling:require_frags_match_blueprint") |
| BooleanOptionKey const | remodel::staged_sampling::start_w_ideal_helices ("remodel:staged_sampling:start_w_ideal_helices") |
| BooleanOptionKey const | remodel::staged_sampling::sample_over_loops ("remodel:staged_sampling:sample_over_loops") |
| BooleanOptionKey const | remodel::staged_sampling::small_moves ("remodel:staged_sampling:small_moves") |
| BooleanOptionKey const | remodel::staged_sampling::fa_relax_moves ("remodel:staged_sampling:fa_relax_moves") |
| BooleanOptionKey const | remodel::domainFusion::domainFusion ("remodel:domainFusion") |
| FileOptionKey const | remodel::domainFusion::insert_segment_from_pdb ("remodel:domainFusion:insert_segment_from_pdb") |
| BooleanOptionKey const | remodel::design::design ("remodel:design") |
| BooleanOptionKey const | remodel::design::no_design ("remodel:design:no_design ") |
| BooleanOptionKey const | remodel::design::design_all ("remodel:design:design_all") |
| BooleanOptionKey const | remodel::design::allow_rare_aro_chi ("remodel:design:allow_rare_aro_chi") |
| BooleanOptionKey const | remodel::design::skip_partial ("remodel:design:skip_partial") |
| BooleanOptionKey const | remodel::design::design_neighbors ("remodel:design:design_neighbors") |
| BooleanOptionKey const | remodel::design::find_neighbors ("remodel:design:find_neighbors") |
| BooleanOptionKey const | remodel::RemodelLoopMover::RemodelLoopMover ("remodel:RemodelLoopMover") |
| RealOptionKey const | remodel::RemodelLoopMover::max_linear_chainbreak ("remodel:RemodelLoopMover:max_linear_chainbreak") |
| BooleanOptionKey const | remodel::RemodelLoopMover::randomize_loops ("remodel:RemodelLoopMover:randomize_loops") |
| BooleanOptionKey const | remodel::RemodelLoopMover::use_loop_hash ("remodel:RemodelLoopMover:use_loop_hash") |
| IntegerOptionKey const | remodel::RemodelLoopMover::allowed_closure_attempts ("remodel:RemodelLoopMover:allowed_closure_attempts") |
| IntegerOptionKey const | remodel::RemodelLoopMover::loophash_cycles ("remodel:RemodelLoopMover:loophash_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::simultaneous_cycles ("remodel:RemodelLoopMover:simultaneous_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::independent_cycles ("remodel:RemodelLoopMover:independent_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::boost_closure_cycles ("remodel:RemodelLoopMover:boost_closure_cycles") |
| BooleanOptionKey const | remodel::RemodelLoopMover::force_cutting_N ("remodel:RemodelLoopMover:force_cutting_N") |
| BooleanOptionKey const | remodel::RemodelLoopMover::bypass_closure ("remodel:RemodelLoopMover:bypass_closure") |
| BooleanOptionKey const | remodel::RemodelLoopMover::cyclic_peptide ("remodel:RemodelLoopMover:cyclic_peptide") |
| RealOptionKey const | remodel::RemodelLoopMover::temperature ("remodel:RemodelLoopMover:temperature") |
| BooleanOptionKey const | resample::resample ("resample") |
| FileOptionKey const | resample::silent ("resample:silent") |
| StringOptionKey const | resample::tag ("resample:tag") |
| BooleanOptionKey const | resample::stage1 ("resample:stage1") |
| BooleanOptionKey const | resample::stage2 ("resample:stage2") |
| BooleanOptionKey const | resample::jumps ("resample:jumps") |
| RealVectorOptionKey const | resample::min_max_start_seq_sep ("resample:min_max_start_seq_sep") |
| BooleanOptionKey const | rescore::rescore ("rescore") |
| BooleanOptionKey const | rescore::assign_ss ("rescore:assign_ss") |
| BooleanOptionKey const | rescore::skip ("rescore:skip") |
| BooleanOptionKey const | rescore::verbose ("rescore:verbose") |
| BooleanOptionKey const | rna::rna ("rna") |
| IntegerOptionKey const | rna::minimize_rounds ("rna:minimize_rounds") |
| BooleanOptionKey const | rna::corrected_geo ("rna:corrected_geo") |
| BooleanOptionKey const | rna::vary_geometry ("rna:vary_geometry") |
| BooleanOptionKey const | rna::skip_coord_constraints ("rna:skip_coord_constraints") |
| BooleanOptionKey const | rna::skip_o2prime_trials ("rna:skip_o2prime_trials") |
| StringOptionKey const | rna::vall_torsions ("rna:vall_torsions") |
| BooleanOptionKey const | rna::jump_database ("rna:jump_database") |
| BooleanOptionKey const | rna::bps_database ("rna:bps_database") |
| BooleanOptionKey const | rna::rna_prot_erraser ("rna:rna_prot_erraser") |
| BooleanOptionKey const | rna::deriv_check ("rna:deriv_check") |
| StringOptionKey const | rna::data_file ("rna:data_file") |
| BooleanOptionKey const | rotamerdump::rotamerdump ("rotamerdump") |
| BooleanOptionKey const | rotamerdump::xyz ("rotamerdump:xyz") |
| BooleanOptionKey const | rotamerdump::one_body ("rotamerdump:one_body") |
| BooleanOptionKey const | rotamerdump::two_body ("rotamerdump:two_body") |
| BooleanOptionKey const | rotamerdump::annealer ("rotamerdump:annealer") |
| BooleanOptionKey const | sicdock::sicdock ("sicdock") |
| RealOptionKey const | sicdock::clash_dis ("sicdock:clash_dis") |
| RealOptionKey const | sicdock::contact_dis ("sicdock:contact_dis") |
| RealOptionKey const | sicdock::hash_2D_vs_3D ("sicdock:hash_2D_vs_3D") |
| BooleanOptionKey const | sewing::sewing ("sewing") |
| FileOptionKey const | sewing::query_structure_path ("sewing:query_structure_path") |
| IntegerOptionKey const | sewing::frag1_start ("sewing:frag1_start") |
| IntegerOptionKey const | sewing::frag1_end ("sewing:frag1_end") |
| IntegerOptionKey const | sewing::frag2_start ("sewing:frag2_start") |
| IntegerOptionKey const | sewing::frag2_end ("sewing:frag2_end") |
| IntegerOptionKey const | sewing::minimum_helix_contacts ("sewing:minimum_helix_contacts") |
| IntegerOptionKey const | sewing::helices_to_add ("sewing:helices_to_add") |
| RealOptionKey const | sewing::single_helix_rmsd_cutoff ("sewing:single_helix_rmsd_cutoff") |
| RealOptionKey const | sewing::helix_pair_rmsd_cutoff ("sewing:helix_pair_rmsd_cutoff") |
| FileOptionKey const | sewing::nat_ro_file ("sewing:nat_ro_file") |
| RealOptionKey const | sewing::helix_cap_dist_cutoff ("sewing:helix_cap_dist_cutoff") |
| RealOptionKey const | sewing::helix_contact_dist_cutoff ("sewing:helix_contact_dist_cutoff") |
| IntegerOptionKey const | sewing::min_helix_size ("sewing:min_helix_size") |
| BooleanOptionKey const | SSrbrelax::SSrbrelax ("SSrbrelax") |
| FileOptionKey const | SSrbrelax::rb_file ("SSrbrelax:rb_file") |
| FileOptionKey const | SSrbrelax::rb_param_file ("SSrbrelax:rb_param_file") |
| IntegerVectorOptionKey const | SSrbrelax::frag_sizes ("SSrbrelax:frag_sizes") |
| FileVectorOptionKey const | SSrbrelax::frag_files ("SSrbrelax:frag_files") |
| BooleanOptionKey const | stepwise::stepwise ("stepwise") |
| StringVectorOptionKey const | stepwise::s1 ("stepwise:s1") |
| StringVectorOptionKey const | stepwise::s2 ("stepwise:s2") |
| StringVectorOptionKey const | stepwise::silent1 ("stepwise:silent1") |
| StringVectorOptionKey const | stepwise::silent2 ("stepwise:silent2") |
| StringVectorOptionKey const | stepwise::tags1 ("stepwise:tags1") |
| StringVectorOptionKey const | stepwise::tags2 ("stepwise:tags2") |
| IntegerVectorOptionKey const | stepwise::slice_res1 ("stepwise:slice_res1") |
| IntegerVectorOptionKey const | stepwise::slice_res2 ("stepwise:slice_res2") |
| IntegerVectorOptionKey const | stepwise::input_res1 ("stepwise:input_res1") |
| IntegerVectorOptionKey const | stepwise::input_res2 ("stepwise:input_res2") |
| BooleanOptionKey const | stepwise::backbone_only1 ("stepwise:backbone_only1") |
| BooleanOptionKey const | stepwise::backbone_only2 ("stepwise:backbone_only2") |
| IntegerVectorOptionKey const | stepwise::fixed_res ("stepwise:fixed_res") |
| BooleanOptionKey const | stepwise::test_encapsulation ("stepwise:test_encapsulation") |
| BooleanOptionKey const | stepwise::choose_random ("stepwise:choose_random") |
| IntegerOptionKey const | stepwise::num_random_samples ("stepwise:num_random_samples") |
| IntegerOptionKey const | stepwise::num_pose_minimize ("stepwise:num_pose_minimize") |
| BooleanOptionKey const | stepwise::atr_rep_screen ("stepwise:atr_rep_screen") |
| StringOptionKey const | stepwise::align_pdb ("stepwise:align_pdb") |
| BooleanOptionKey const | stepwise::enumerate ("stepwise:enumerate") |
| BooleanOptionKey const | stepwise::preminimize ("stepwise:preminimize") |
| BooleanOptionKey const | stepwise::dump ("stepwise:dump") |
| BooleanOptionKey const | stepwise::VERBOSE ("stepwise:VERBOSE") |
| BooleanOptionKey const | stepwise::use_green_packer ("stepwise:use_green_packer") |
| RealOptionKey const | stepwise::rmsd_screen ("stepwise:rmsd_screen") |
| BooleanOptionKey const | stepwise::skip_minimize ("stepwise:skip_minimize") |
| StringOptionKey const | stepwise::sampler_silent_file ("stepwise:sampler_silent_file") |
| StringVectorOptionKey const | stepwise::move ("stepwise:move") |
| BooleanOptionKey const | stepwise::monte_carlo::monte_carlo ("stepwise:monte_carlo") |
| BooleanOptionKey const | stepwise::monte_carlo::verbose_scores ("stepwise:monte_carlo:verbose_scores") |
| BooleanOptionKey const | stepwise::monte_carlo::skip_deletions ("stepwise:monte_carlo:skip_deletions") |
| BooleanOptionKey const | stepwise::monte_carlo::allow_internal_hinge_moves ("stepwise:monte_carlo:allow_internal_hinge_moves") |
| BooleanOptionKey const | stepwise::monte_carlo::allow_internal_local_moves ("stepwise:monte_carlo:allow_internal_local_moves") |
| BooleanOptionKey const | stepwise::monte_carlo::allow_skip_bulge ("stepwise:monte_carlo:allow_skip_bulge") |
| RealOptionKey const | stepwise::monte_carlo::from_scratch_frequency ("stepwise:monte_carlo:from_scratch_frequency") |
| BooleanOptionKey const | stepwise::monte_carlo::allow_split_off ("stepwise:monte_carlo:allow_split_off") |
| IntegerOptionKey const | stepwise::monte_carlo::cycles ("stepwise:monte_carlo:cycles") |
| RealOptionKey const | stepwise::monte_carlo::temperature ("stepwise:monte_carlo:temperature") |
| RealOptionKey const | stepwise::monte_carlo::add_delete_frequency ("stepwise:monte_carlo:add_delete_frequency") |
| RealOptionKey const | stepwise::monte_carlo::intermolecular_frequency ("stepwise:monte_carlo:intermolecular_frequency") |
| RealOptionKey const | stepwise::monte_carlo::minimize_single_res_frequency ("stepwise:monte_carlo:minimize_single_res_frequency") |
| BooleanOptionKey const | stepwise::monte_carlo::allow_variable_bond_geometry ("stepwise:monte_carlo:allow_variable_bond_geometry") |
| RealOptionKey const | stepwise::monte_carlo::switch_focus_frequency ("stepwise:monte_carlo:switch_focus_frequency") |
| RealOptionKey const | stepwise::monte_carlo::just_min_after_mutation_frequency ("stepwise:monte_carlo:just_min_after_mutation_frequency") |
| BooleanOptionKey const | stepwise::monte_carlo::local_redock_only ("stepwise:monte_carlo:local_redock_only") |
| BooleanOptionKey const | stepwise::monte_carlo::make_movie ("stepwise:monte_carlo:make_movie") |
| BooleanOptionKey const | stepwise::rna::rna ("stepwise:rna") |
| IntegerOptionKey const | stepwise::rna::sampler_num_pose_kept ("stepwise:rna:sampler_num_pose_kept") |
| RealOptionKey const | stepwise::rna::native_edensity_score_cutoff ("stepwise:rna:native_edensity_score_cutoff") |
| BooleanOptionKey const | stepwise::rna::o2prime_legacy_mode ("stepwise:rna:o2prime_legacy_mode") |
| BooleanOptionKey const | stepwise::rna::sampler_perform_phosphate_pack ("stepwise:rna:sampler_perform_phosphate_pack") |
| BooleanOptionKey const | stepwise::rna::distinguish_pucker ("stepwise:rna:distinguish_pucker") |
| BooleanOptionKey const | stepwise::rna::finer_sampling_at_chain_closure ("stepwise:rna:finer_sampling_at_chain_closure") |
| BooleanOptionKey const | stepwise::rna::PBP_clustering_at_chain_closure ("stepwise:rna:PBP_clustering_at_chain_closure") |
| BooleanOptionKey const | stepwise::rna::sampler_allow_syn_pyrimidine ("stepwise:rna:sampler_allow_syn_pyrimidine") |
| BooleanOptionKey const | stepwise::rna::sampler_extra_chi_rotamer ("stepwise:rna:sampler_extra_chi_rotamer") |
| BooleanOptionKey const | stepwise::rna::sampler_extra_beta_rotamer ("stepwise:rna:sampler_extra_beta_rotamer") |
| BooleanOptionKey const | stepwise::rna::sampler_extra_epsilon_rotamer ("stepwise:rna:sampler_extra_epsilon_rotamer") |
| BooleanOptionKey const | stepwise::rna::force_centroid_interaction ("stepwise:rna:force_centroid_interaction") |
| BooleanOptionKey const | stepwise::rna::virtual_sugar_legacy_mode ("stepwise:rna:virtual_sugar_legacy_mode") |
| BooleanOptionKey const | stepwise::rna::erraser ("stepwise:rna:erraser") |
| BooleanOptionKey const | stepwise::rna::centroid_screen ("stepwise:rna:centroid_screen") |
| BooleanOptionKey const | stepwise::rna::VDW_atr_rep_screen ("stepwise:rna:VDW_atr_rep_screen") |
| BooleanOptionKey const | stepwise::rna::minimize_and_score_native_pose ("stepwise:rna:minimize_and_score_native_pose") |
| BooleanOptionKey const | stepwise::rna::rm_virt_phosphate ("stepwise:rna:rm_virt_phosphate") |
| StringVectorOptionKey const | stepwise::rna::VDW_rep_screen_info ("stepwise:rna:VDW_rep_screen_info") |
| RealOptionKey const | stepwise::rna::VDW_rep_alignment_RMSD_CUTOFF ("stepwise:rna:VDW_rep_alignment_RMSD_CUTOFF") |
| StringVectorOptionKey const | stepwise::rna::VDW_rep_delete_matching_res ("stepwise:rna:VDW_rep_delete_matching_res") |
| RealOptionKey const | stepwise::rna::VDW_rep_screen_physical_pose_clash_dist_cutoff ("stepwise:rna:VDW_rep_screen_physical_pose_clash_dist_cutoff") |
| BooleanOptionKey const | stepwise::rna::integration_test ("stepwise:rna:integration_test") |
| BooleanOptionKey const | stepwise::rna::allow_bulge_at_chainbreak ("stepwise:rna:allow_bulge_at_chainbreak") |
| BooleanOptionKey const | stepwise::rna::parin_favorite_output ("stepwise:rna:parin_favorite_output") |
| BooleanOptionKey const | stepwise::rna::reinitialize_CCD_torsions ("stepwise:rna:reinitialize_CCD_torsions") |
| BooleanOptionKey const | stepwise::rna::sample_both_sugar_base_rotamer ("stepwise:rna:sample_both_sugar_base_rotamer") |
| BooleanOptionKey const | stepwise::rna::sampler_include_torsion_value_in_tag ("stepwise:rna:sampler_include_torsion_value_in_tag") |
| BooleanOptionKey const | stepwise::rna::sampler_assert_no_virt_sugar_sampling ("stepwise:rna:sampler_assert_no_virt_sugar_sampling") |
| BooleanOptionKey const | stepwise::rna::sampler_try_sugar_instantiation ("stepwise:rna:sampler_try_sugar_instantiation") |
| BooleanOptionKey const | stepwise::rna::do_not_sample_multiple_virtual_sugar ("stepwise:rna:do_not_sample_multiple_virtual_sugar") |
| BooleanOptionKey const | stepwise::rna::sample_ONLY_multiple_virtual_sugar ("stepwise:rna:sample_ONLY_multiple_virtual_sugar") |
| BooleanOptionKey const | stepwise::rna::allow_base_pair_only_centroid_screen ("stepwise:rna:allow_base_pair_only_centroid_screen") |
| BooleanOptionKey const | stepwise::rna::minimizer_rename_tag ("stepwise:rna:minimizer_rename_tag") |
| IntegerVectorOptionKey const | stepwise::rna::minimize_res ("stepwise:rna:minimize_res") |
| StringVectorOptionKey const | stepwise::rna::alignment_res ("stepwise:rna:alignment_res") |
| IntegerVectorOptionKey const | stepwise::rna::native_alignment_res ("stepwise:rna:native_alignment_res") |
| IntegerVectorOptionKey const | stepwise::rna::rmsd_res ("stepwise:rna:rmsd_res") |
| IntegerVectorOptionKey const | stepwise::rna::missing_res ("stepwise:rna:missing_res") |
| IntegerVectorOptionKey const | stepwise::rna::missing_res2 ("stepwise:rna:missing_res2") |
| IntegerOptionKey const | stepwise::rna::job_queue_ID ("stepwise:rna:job_queue_ID") |
| BooleanOptionKey const | stepwise::rna::minimize_and_score_sugar ("stepwise:rna:minimize_and_score_sugar") |
| IntegerVectorOptionKey const | stepwise::rna::global_sample_res_list ("stepwise:rna:global_sample_res_list") |
| FileOptionKey const | stepwise::rna::filter_output_filename ("stepwise:rna:filter_output_filename") |
| BooleanOptionKey const | stepwise::rna::combine_long_loop_mode ("stepwise:rna:combine_long_loop_mode") |
| BooleanOptionKey const | stepwise::rna::combine_helical_silent_file ("stepwise:rna:combine_helical_silent_file") |
| BooleanOptionKey const | stepwise::rna::output_extra_RMSDs ("stepwise:rna:output_extra_RMSDs") |
| IntegerVectorOptionKey const | stepwise::rna::protonated_H1_adenosine_list ("stepwise:rna:protonated_H1_adenosine_list") |
| IntegerVectorOptionKey const | stepwise::rna::native_virtual_res ("stepwise:rna:native_virtual_res") |
| BooleanOptionKey const | stepwise::rna::simple_append_map ("stepwise:rna:simple_append_map") |
| BooleanOptionKey const | stepwise::rna::allow_fixed_res_at_moving_res ("stepwise:rna:allow_fixed_res_at_moving_res") |
| BooleanOptionKey const | stepwise::rna::force_user_defined_jumps ("stepwise:rna:force_user_defined_jumps") |
| StringVectorOptionKey const | stepwise::rna::jump_point_pairs ("stepwise:rna:jump_point_pairs") |
| BooleanOptionKey const | stepwise::rna::add_virt_root ("stepwise:rna:add_virt_root") |
| BooleanOptionKey const | stepwise::rna::floating_base ("stepwise:rna:floating_base") |
| IntegerOptionKey const | stepwise::rna::floating_base_anchor_res ("stepwise:rna:floating_base_anchor_res") |
| BooleanOptionKey const | stepwise::rna::allow_chain_boundary_jump_partner_right_at_fixed_BP ("stepwise:rna:allow_chain_boundary_jump_partner_right_at_fixed_BP") |
| IntegerVectorOptionKey const | stepwise::rna::bulge_res ("stepwise:rna:bulge_res") |
| BooleanOptionKey const | stepwise::rna::rebuild_bulge_mode ("stepwise:rna:rebuild_bulge_mode") |
| BooleanOptionKey const | stepwise::rna::virtual_sugar_keep_base_fixed ("stepwise:rna:virtual_sugar_keep_base_fixed") |
| BooleanOptionKey const | stepwise::rna::virtual_sugar_do_minimize ("stepwise:rna:virtual_sugar_do_minimize") |
| RealOptionKey const | stepwise::rna::sampler_max_centroid_distance ("stepwise:rna:sampler_max_centroid_distance") |
| BooleanOptionKey const | stepwise::rna::filter_user_alignment_res ("stepwise:rna:filter_user_alignment_res") |
| BooleanOptionKey const | stepwise::rna::tether_jump ("stepwise:rna:tether_jump") |
| BooleanOptionKey const | stepwise::rna::turn_off_rna_chem_map_during_optimize ("stepwise:rna:turn_off_rna_chem_map_during_optimize") |
| BooleanOptionKey const | stepwise::protein::protein ("stepwise:protein") |
| BooleanOptionKey const | stepwise::protein::global_optimize ("stepwise:protein:global_optimize") |
| BooleanOptionKey const | stepwise::protein::disable_sampling_of_loop_takeoff ("stepwise:protein:disable_sampling_of_loop_takeoff") |
| BooleanOptionKey const | stepwise::protein::sample_beta ("stepwise:protein:sample_beta") |
| BooleanOptionKey const | stepwise::protein::ghost_loops ("stepwise:protein:ghost_loops") |
| StringOptionKey const | stepwise::protein::min_type ("stepwise:protein:min_type") |
| RealOptionKey const | stepwise::protein::min_tolerance ("stepwise:protein:min_tolerance") |
| BooleanOptionKey const | stepwise::protein::centroid_screen ("stepwise:protein:centroid_screen") |
| RealOptionKey const | stepwise::protein::centroid_score_diff_cut ("stepwise:protein:centroid_score_diff_cut") |
| StringOptionKey const | stepwise::protein::centroid_weights ("stepwise:protein:centroid_weights") |
| RealOptionKey const | stepwise::protein::score_diff_cut ("stepwise:protein:score_diff_cut") |
| BooleanOptionKey const | stepwise::protein::filter_native_big_bins ("stepwise:protein:filter_native_big_bins") |
| BooleanOptionKey const | stepwise::protein::cluster_by_all_atom_rmsd ("stepwise:protein:cluster_by_all_atom_rmsd") |
| BooleanOptionKey const | stepwise::protein::centroid_output ("stepwise:protein:centroid_output") |
| IntegerOptionKey const | stepwise::protein::n_sample ("stepwise:protein:n_sample") |
| IntegerOptionKey const | stepwise::protein::nstruct_centroid ("stepwise:protein:nstruct_centroid") |
| BooleanOptionKey const | stepwise::protein::ccd_close ("stepwise:protein:ccd_close") |
| IntegerVectorOptionKey const | stepwise::protein::bridge_res ("stepwise:protein:bridge_res") |
| BooleanOptionKey const | stepwise::protein::cart_min ("stepwise:protein:cart_min") |
| BooleanOptionKey const | stepwise::protein::move_jumps_between_chains ("stepwise:protein:move_jumps_between_chains") |
| BooleanOptionKey const | stepwise::protein::use_packer_instead_of_rotamer_trials ("stepwise:protein:use_packer_instead_of_rotamer_trials") |
| BooleanOptionKey const | stepwise::protein::expand_loop_takeoff ("stepwise:protein:expand_loop_takeoff") |
| BooleanOptionKey const | stepwise::protein::skip_coord_constraints ("stepwise:protein:skip_coord_constraints") |
| BooleanOptionKey const | stepwise::protein::allow_virtual_side_chains ("stepwise:protein:allow_virtual_side_chains") |
| BooleanOptionKey const | stepwise::protein::protein_prepack ("stepwise:protein:protein_prepack") |
| BooleanOptionKey const | full_model::full_model ("full_model") |
| ResidueChainVectorOptionKey const | full_model::cutpoint_open ("full_model:cutpoint_open") |
| ResidueChainVectorOptionKey const | full_model::cutpoint_closed ("full_model:cutpoint_closed") |
| StringVectorOptionKey const | full_model::other_poses ("full_model:other_poses") |
| ResidueChainVectorOptionKey const | full_model::extra_min_res ("full_model:extra_min_res") |
| ResidueChainVectorOptionKey const | full_model::jump_res ("full_model:jump_res") |
| ResidueChainVectorOptionKey const | full_model::root_res ("full_model:root_res") |
| ResidueChainVectorOptionKey const | full_model::virtual_sugar_res ("full_model:virtual_sugar_res") |
| ResidueChainVectorOptionKey const | full_model::virtual_res ("full_model:virtual_res") |
| ResidueChainVectorOptionKey const | full_model::sample_res ("full_model:sample_res") |
| ResidueChainVectorOptionKey const | full_model::calc_rms_res ("full_model:calc_rms_res") |
| ResidueChainVectorOptionKey const | full_model::working_res ("full_model:working_res") |
| BooleanOptionKey const | full_model::rna::rna ("full_model:rna") |
| ResidueChainVectorOptionKey const | full_model::rna::terminal_res ("full_model:rna:terminal_res") |
| ResidueChainVectorOptionKey const | full_model::rna::force_syn_chi_res_list ("full_model:rna:force_syn_chi_res_list") |
| ResidueChainVectorOptionKey const | full_model::rna::force_north_sugar_list ("full_model:rna:force_north_sugar_list") |
| ResidueChainVectorOptionKey const | full_model::rna::force_south_sugar_list ("full_model:rna:force_south_sugar_list") |
| BooleanOptionKey const | strand_assembly::strand_assembly ("strand_assembly") |
| IntegerOptionKey const | strand_assembly::min_num_strands_to_deal ("strand_assembly:min_num_strands_to_deal") |
| IntegerOptionKey const | strand_assembly::max_num_strands_to_deal ("strand_assembly:max_num_strands_to_deal") |
| BooleanOptionKey const | strand_assembly::extract_native_only ("strand_assembly:extract_native_only") |
| IntegerOptionKey const | strand_assembly::min_res_in_strand ("strand_assembly:min_res_in_strand") |
| IntegerOptionKey const | strand_assembly::max_res_in_strand ("strand_assembly:max_res_in_strand") |
| RealOptionKey const | strand_assembly::min_O_N_dis ("strand_assembly:min_O_N_dis") |
| RealOptionKey const | strand_assembly::max_O_N_dis ("strand_assembly:max_O_N_dis") |
| RealOptionKey const | strand_assembly::min_sheet_dis ("strand_assembly:min_sheet_dis") |
| RealOptionKey const | strand_assembly::max_sheet_dis ("strand_assembly:max_sheet_dis") |
| RealOptionKey const | strand_assembly::min_sheet_torsion ("strand_assembly:min_sheet_torsion") |
| RealOptionKey const | strand_assembly::max_sheet_torsion ("strand_assembly:max_sheet_torsion") |
| RealOptionKey const | strand_assembly::min_sheet_angle ("strand_assembly:min_sheet_angle") |
| RealOptionKey const | strand_assembly::max_sheet_angle ("strand_assembly:max_sheet_angle") |
| RealOptionKey const | strand_assembly::min_shortest_dis_sidechain_inter_sheet ("strand_assembly:min_shortest_dis_sidechain_inter_sheet") |
| BooleanOptionKey const | TailSegment::TailSegment ("TailSegment") |
| IntegerOptionKey const | TailSegment::refine_cycles ("TailSegment:refine_cycles") |
| IntegerOptionKey const | TailSegment::refine_repack_cycles ("TailSegment:refine_repack_cycles") |
| BooleanOptionKey const | templates::templates ("templates") |
| FileOptionKey const | templates::config ("templates:config") |
| BooleanOptionKey const | templates::fix_aligned_residues ("templates:fix_aligned_residues") |
| FileOptionKey const | templates::fix_frag_file ("templates:fix_frag_file") |
| IntegerOptionKey const | templates::fix_margin ("templates:fix_margin") |
| IntegerOptionKey const | templates::min_nr_large_frags ("templates:min_nr_large_frags") |
| IntegerOptionKey const | templates::min_nr_small_frags ("templates:min_nr_small_frags") |
| BooleanOptionKey const | templates::no_pick_fragments ("templates:no_pick_fragments") |
| IntegerOptionKey const | templates::nr_large_copies ("templates:nr_large_copies") |
| IntegerOptionKey const | templates::nr_small_copies ("templates:nr_small_copies") |
| BooleanOptionKey const | templates::pairings ("templates:pairings") |
| BooleanOptionKey const | templates::pick_multiple_sizes ("templates:pick_multiple_sizes") |
| BooleanOptionKey const | templates::strand_constraint ("templates:strand_constraint") |
| BooleanOptionKey const | templates::vary_frag_size ("templates:vary_frag_size") |
| BooleanOptionKey const | templates::no_culling ("templates:no_culling") |
| FileOptionKey const | templates::helix_pairings ("templates:helix_pairings") |
| FileOptionKey const | templates::prefix ("templates:prefix") |
| IntegerOptionKey const | templates::change_movemap ("templates:change_movemap") |
| BooleanOptionKey const | templates::force_native_topology ("templates:force_native_topology") |
| RealOptionKey const | templates::topology_rank_cutoff ("templates:topology_rank_cutoff") |
| IntegerOptionKey const | templates::min_frag_size ("templates:min_frag_size") |
| IntegerOptionKey const | templates::max_shrink ("templates:max_shrink") |
| IntegerOptionKey const | templates::shrink_step ("templates:shrink_step") |
| IntegerOptionKey const | templates::shrink_pos_step ("templates:shrink_pos_step") |
| IntegerOptionKey const | templates::min_padding ("templates:min_padding") |
| IntegerOptionKey const | templates::min_align_pos ("templates:min_align_pos") |
| IntegerOptionKey const | templates::max_align_pos ("templates:max_align_pos") |
| BooleanOptionKey const | templates::cst::cst ("templates:cst") |
| IntegerOptionKey const | templates::cst::topN ("templates:cst:topN") |
| RealOptionKey const | templates::cst::wTopol ("templates:cst:wTopol") |
| RealOptionKey const | templates::cst::wExtern ("templates:cst:wExtern") |
| BooleanOptionKey const | templates::fragsteal::fragsteal ("templates:fragsteal") |
| IntegerOptionKey const | templates::fragsteal::topN ("templates:fragsteal:topN") |
| RealOptionKey const | templates::fragsteal::wTopol ("templates:fragsteal:wTopol") |
| RealOptionKey const | templates::fragsteal::wExtern ("templates:fragsteal:wExtern") |
| BooleanOptionKey const | unfolded_state::unfolded_state ("unfolded_state") |
| FileOptionKey const | unfolded_state::unfolded_energies_file ("unfolded_state:unfolded_energies_file") |
| BooleanOptionKey const | wum::wum ("wum") |
| IntegerOptionKey const | wum::n_slaves_per_master ("wum:n_slaves_per_master") |
| IntegerOptionKey const | wum::n_masters ("wum:n_masters") |
| IntegerOptionKey const | wum::memory_limit ("wum:memory_limit") |
| StringOptionKey const | wum::extra_scorefxn ("wum:extra_scorefxn") |
| FileOptionKey const | wum::extra_scorefxn_ref_structure ("wum:extra_scorefxn_ref_structure") |
| IntegerOptionKey const | wum::extra_scorefxn_relax ("wum:extra_scorefxn_relax") |
| RealOptionKey const | wum::trim_proportion ("wum:trim_proportion") |
| BooleanOptionKey const | blivens::blivens ("blivens") |
| BooleanOptionKey const | blivens::disulfide_scorer::disulfide_scorer ("blivens:disulfide_scorer") |
| RealOptionKey const | blivens::disulfide_scorer::nds_prob ("blivens:disulfide_scorer:nds_prob") |
| RealOptionKey const | blivens::disulfide_scorer::cys_prob ("blivens:disulfide_scorer:cys_prob") |
| StringOptionKey const | blivens::score_type ("blivens:score_type") |
| BooleanOptionKey const | cmiles::cmiles ("cmiles") |
| BooleanOptionKey const | cmiles::kcluster::kcluster ("cmiles:kcluster") |
| IntegerOptionKey const | cmiles::kcluster::num_clusters ("cmiles:kcluster:num_clusters") |
| BooleanOptionKey const | cmiles::jumping::jumping ("cmiles:jumping") |
| IntegerOptionKey const | cmiles::jumping::resi ("cmiles:jumping:resi") |
| IntegerOptionKey const | cmiles::jumping::resj ("cmiles:jumping:resj") |
| BooleanOptionKey const | crossmatch::crossmatch ("crossmatch") |
| RealOptionKey const | crossmatch::clash_dis ("crossmatch:clash_dis") |
| BooleanOptionKey const | dwkulp::dwkulp ("dwkulp") |
| StringOptionKey const | dwkulp::forcePolyAAfragments ("dwkulp:forcePolyAAfragments") |
| BooleanOptionKey const | evolution::evolution ("evolution") |
| FileVectorOptionKey const | evolution::parentlist ("evolution:parentlist") |
| FileVectorOptionKey const | evolution::childlist ("evolution:childlist") |
| StringOptionKey const | evolution::action ("evolution:action") |
| RealOptionKey const | evolution::rms_threshold ("evolution:rms_threshold") |
| RealOptionKey const | evolution::rms_topmargin ("evolution:rms_topmargin") |
| StringOptionKey const | evolution::targetdir ("evolution:targetdir") |
| RealOptionKey const | evolution::padding_score_filter ("evolution:padding_score_filter") |
| RealOptionKey const | evolution::padding_stage2_filter ("evolution:padding_stage2_filter") |
| BooleanOptionKey const | james::james ("james") |
| IntegerOptionKey const | james::min_seqsep ("james:min_seqsep") |
| StringVectorOptionKey const | james::atom_names ("james:atom_names") |
| RealVectorOptionKey const | james::dist_thresholds ("james:dist_thresholds") |
| RealVectorOptionKey const | james::torsion_thresholds ("james:torsion_thresholds") |
| BooleanOptionKey const | james::debug ("james:debug") |
| RealOptionKey const | james::real ("james:real") |
| IntegerOptionKey const | james::n_designs ("james:n_designs") |
| BooleanOptionKey const | james::thread_unaligned ("james:thread_unaligned") |
| BooleanOptionKey const | krassk::krassk ("krassk") |
| BooleanOptionKey const | krassk::tail_mode ("krassk:tail_mode") |
| IntegerOptionKey const | krassk::tail_mode_name ("krassk:tail_mode_name") |
| StringOptionKey const | krassk::tail_output_file_name ("krassk:tail_output_file_name") |
| BooleanOptionKey const | murphp::murphp ("murphp") |
| StringOptionKey const | murphp::inv_kin_lig_loop_design_filename ("murphp:inv_kin_lig_loop_design_filename") |
| BooleanOptionKey const | phil::phil ("phil") |
| IntegerOptionKey const | phil::nloop ("phil:nloop") |
| StringOptionKey const | phil::vall_file ("phil:vall_file") |
| BooleanOptionKey const | robert::robert ("robert") |
| StringOptionKey const | robert::pairdata_input_pdb_list ("robert:pairdata_input_pdb_list") |
| RealOptionKey const | robert::pcs_maxsub_filter ("robert:pcs_maxsub_filter") |
| RealOptionKey const | robert::pcs_maxsub_rmsd ("robert:pcs_maxsub_rmsd") |
| BooleanOptionKey const | robert::pcs_dump_cluster ("robert:pcs_dump_cluster") |
| RealOptionKey const | robert::pcs_cluster_coverage ("robert:pcs_cluster_coverage") |
| BooleanOptionKey const | robert::pcs_cluster_lowscoring ("robert:pcs_cluster_lowscoring") |
| BooleanOptionKey const | rot_anl::rot_anl ("rot_anl") |
| StringOptionKey const | rot_anl::tag ("rot_anl:tag") |
| BooleanOptionKey const | rot_anl::min ("rot_anl:min") |
| BooleanOptionKey const | rot_anl::repack ("rot_anl:repack") |
| BooleanOptionKey const | rot_anl::rtmin ("rot_anl:rtmin") |
| BooleanOptionKey const | rot_anl::scmove ("rot_anl:scmove") |
| BooleanOptionKey const | rot_anl::design ("rot_anl:design") |
| BooleanOptionKey const | rot_anl::dump_pdb ("rot_anl:dump_pdb") |
| IntegerOptionKey const | rot_anl::nloop_scmove ("rot_anl:nloop_scmove") |
| BooleanOptionKey const | smhybrid::smhybrid ("smhybrid") |
| BooleanOptionKey const | smhybrid::add_cavities ("smhybrid:add_cavities") |
| BooleanOptionKey const | smhybrid::abinitio_design ("smhybrid:abinitio_design") |
| BooleanOptionKey const | smhybrid::fa_refine ("smhybrid:fa_refine") |
| BooleanOptionKey const | smhybrid::virtual_nterm ("smhybrid:virtual_nterm") |
| BooleanOptionKey const | smhybrid::debug ("smhybrid:debug") |
| BooleanOptionKey const | smhybrid::refine ("smhybrid:refine") |
| BooleanOptionKey const | smhybrid::centroid_all_val ("smhybrid:centroid_all_val") |
| BooleanOptionKey const | smhybrid::subsubs_attract ("smhybrid:subsubs_attract") |
| BooleanOptionKey const | smhybrid::linker_cst ("smhybrid:linker_cst") |
| BooleanOptionKey const | smhybrid::pseudosym ("smhybrid:pseudosym") |
| BooleanOptionKey const | smhybrid::design_linker ("smhybrid:design_linker") |
| BooleanOptionKey const | smhybrid::design ("smhybrid:design") |
| BooleanOptionKey const | smhybrid::restrict_design_to_interface ("smhybrid:restrict_design_to_interface") |
| BooleanOptionKey const | smhybrid::restrict_design_to_subsub_interface ("smhybrid:restrict_design_to_subsub_interface") |
| BooleanOptionKey const | smhybrid::design_hydrophobic ("smhybrid:design_hydrophobic") |
| BooleanOptionKey const | smhybrid::add_metal_at_0 ("smhybrid:add_metal_at_0") |
| IntegerOptionKey const | smhybrid::nres_mono ("smhybrid:nres_mono") |
| IntegerOptionKey const | smhybrid::abinitio_cycles ("smhybrid:abinitio_cycles") |
| IntegerOptionKey const | smhybrid::primary_subsubunit ("smhybrid:primary_subsubunit") |
| IntegerOptionKey const | smhybrid::minbb ("smhybrid:minbb") |
| IntegerOptionKey const | smhybrid::switch_concert_sub ("smhybrid:switch_concert_sub") |
| RealOptionKey const | smhybrid::temperature ("smhybrid:temperature") |
| BooleanOptionKey const | smhybrid::inter_subsub_cst ("smhybrid:inter_subsub_cst") |
| RealOptionKey const | smhybrid::rb_mag ("smhybrid:rb_mag") |
| FileOptionKey const | smhybrid::symm_def_template ("smhybrid:symm_def_template") |
| FileOptionKey const | smhybrid::symm_def_template_reduced ("smhybrid:symm_def_template_reduced") |
| IntegerVectorOptionKey const | smhybrid::attach_as_sc ("smhybrid:attach_as_sc") |
| IntegerVectorOptionKey const | smhybrid::attach_as_sc_sub ("smhybrid:attach_as_sc_sub") |
| BooleanVectorOptionKey const | smhybrid::chainbreaks ("smhybrid:chainbreaks") |
| StringVectorOptionKey const | smhybrid::design_res_files ("smhybrid:design_res_files") |
| StringVectorOptionKey const | smhybrid::fixed_res_files ("smhybrid:fixed_res_files") |
| StringVectorOptionKey const | smhybrid::frag_res_files ("smhybrid:frag_res_files") |
| StringVectorOptionKey const | smhybrid::scattach_res_files ("smhybrid:scattach_res_files") |
| StringVectorOptionKey const | smhybrid::rep_edge_files ("smhybrid:rep_edge_files") |
| StringVectorOptionKey const | smhybrid::virtual_res_files ("smhybrid:virtual_res_files") |
| StringVectorOptionKey const | smhybrid::jumpcut_files ("smhybrid:jumpcut_files") |
| StringVectorOptionKey const | smhybrid::cst_sub_files ("smhybrid:cst_sub_files") |
| StringVectorOptionKey const | smhybrid::symm_file_tag ("smhybrid:symm_file_tag") |
| StringVectorOptionKey const | smhybrid::attach_atom ("smhybrid:attach_atom") |
| StringVectorOptionKey const | smhybrid::add_res_before ("smhybrid:add_res_before") |
| StringVectorOptionKey const | smhybrid::add_res_after ("smhybrid:add_res_after") |
| StringVectorOptionKey const | smhybrid::add_ss_before ("smhybrid:add_ss_before") |
| StringVectorOptionKey const | smhybrid::add_ss_after ("smhybrid:add_ss_after") |
| StringVectorOptionKey const | smhybrid::add_atom_at_cen ("smhybrid:add_atom_at_cen") |
| StringVectorOptionKey const | smhybrid::attach_rsd ("smhybrid:attach_rsd") |
| BooleanOptionKey const | threadsc::threadsc ("threadsc") |
| StringOptionKey const | threadsc::src_chain ("threadsc:src_chain") |
| StringOptionKey const | threadsc::trg_chain ("threadsc:trg_chain") |
| IntegerOptionKey const | threadsc::src_first_resid ("threadsc:src_first_resid") |
| IntegerOptionKey const | threadsc::trg_first_resid ("threadsc:trg_first_resid") |
| IntegerOptionKey const | threadsc::nres ("threadsc:nres") |
| IntegerOptionKey const | threadsc::trg_anchor ("threadsc:trg_anchor") |
| BooleanOptionKey const | ufv::ufv ("ufv") |
| IntegerOptionKey const | ufv::left ("ufv:left") |
| IntegerOptionKey const | ufv::right ("ufv:right") |
| StringOptionKey const | ufv::ss ("ufv:ss") |
| StringOptionKey const | ufv::aa_during_build ("ufv:aa_during_build") |
| StringOptionKey const | ufv::aa_during_design_refine ("ufv:aa_during_design_refine") |
| BooleanOptionKey const | ufv::keep_junction_torsions ("ufv:keep_junction_torsions") |
| FileOptionKey const | ufv::ufv_loops ("ufv:ufv_loops") |
| BooleanOptionKey const | ufv::use_fullmer ("ufv:use_fullmer") |
| StringOptionKey const | ufv::centroid_loop_mover ("ufv:centroid_loop_mover") |
| BooleanOptionKey const | ufv::no_neighborhood_design ("ufv:no_neighborhood_design") |
| IntegerOptionKey const | ufv::dr_cycles ("ufv:dr_cycles") |
| StringOptionKey const | ufv::centroid_sfx ("ufv:centroid_sfx") |
| StringOptionKey const | ufv::centroid_sfx_patch ("ufv:centroid_sfx_patch") |
| StringOptionKey const | ufv::fullatom_sfx ("ufv:fullatom_sfx") |
| StringOptionKey const | ufv::fullatom_sfx_patch ("ufv:fullatom_sfx_patch") |
| BooleanOptionKey const | ufv::insert::insert ("ufv:insert") |
| FileOptionKey const | ufv::insert::insert_pdb ("ufv:insert:insert_pdb") |
| FileOptionKey const | ufv::insert::attached_pdb ("ufv:insert:attached_pdb") |
| StringOptionKey const | ufv::insert::connection_scheme ("ufv:insert:connection_scheme") |
| BooleanOptionKey const | willmatch::willmatch ("willmatch") |
| StringVectorOptionKey const | willmatch::write_reduced_matchset ("willmatch:write_reduced_matchset") |
| RealOptionKey const | willmatch::interface_size ("willmatch:interface_size") |
| RealOptionKey const | willmatch::max_dis_any ("willmatch:max_dis_any") |
| RealOptionKey const | willmatch::max_dis_all ("willmatch:max_dis_all") |
| RealOptionKey const | willmatch::max_dis_hb ("willmatch:max_dis_hb") |
| RealOptionKey const | willmatch::min_dis_hb ("willmatch:min_dis_hb") |
| RealOptionKey const | willmatch::max_dis_hb_colinear ("willmatch:max_dis_hb_colinear") |
| RealOptionKey const | willmatch::max_dis_metal ("willmatch:max_dis_metal") |
| RealOptionKey const | willmatch::max_ang_metal ("willmatch:max_ang_metal") |
| RealOptionKey const | willmatch::clash_dis ("willmatch:clash_dis") |
| RealOptionKey const | willmatch::c2_linker_dist ("willmatch:c2_linker_dist") |
| RealOptionKey const | willmatch::identical_match_dis ("willmatch:identical_match_dis") |
| RealOptionKey const | willmatch::chi1_increment ("willmatch:chi1_increment") |
| RealOptionKey const | willmatch::chi2_increment ("willmatch:chi2_increment") |
| RealOptionKey const | willmatch::c2_symm_increment ("willmatch:c2_symm_increment") |
| RealOptionKey const | willmatch::cb_sasa_thresh ("willmatch:cb_sasa_thresh") |
| BooleanOptionKey const | willmatch::design_interface ("willmatch:design_interface") |
| FileOptionKey const | willmatch::chilist ("willmatch:chilist") |
| FileOptionKey const | willmatch::fixed_res ("willmatch:fixed_res") |
| FileOptionKey const | willmatch::native1 ("willmatch:native1") |
| FileOptionKey const | willmatch::native2 ("willmatch:native2") |
| FileOptionKey const | willmatch::exclude_res1 ("willmatch:exclude_res1") |
| FileOptionKey const | willmatch::exclude_res2 ("willmatch:exclude_res2") |
| FileOptionKey const | willmatch::taglist ("willmatch:taglist") |
| IntegerVectorOptionKey const | willmatch::residues ("willmatch:residues") |
| BooleanOptionKey const | willmatch::symmetry_d2 ("willmatch:symmetry_d2") |
| BooleanOptionKey const | willmatch::symmetry_c2_dock ("willmatch:symmetry_c2_dock") |
| IntegerVectorOptionKey const | willmatch::splitwork ("willmatch:splitwork") |
| BooleanOptionKey const | willmatch::exclude_ala ("willmatch:exclude_ala") |
| RealOptionKey const | willmatch::match_overlap_dis ("willmatch:match_overlap_dis") |
| RealOptionKey const | willmatch::match_overlap_ang ("willmatch:match_overlap_ang") |
| IntegerVectorOptionKey const | willmatch::forbid_residues ("willmatch:forbid_residues") |
| RealVectorOptionKey const | willmatch::poi ("willmatch:poi") |
| RealOptionKey const | willmatch::poidis ("willmatch:poidis") |
| BooleanOptionKey const | willmatch::homodimer ("willmatch:homodimer") |
| RealOptionKey const | willmatch::fa_dun_thresh ("willmatch:fa_dun_thresh") |
1.8.7