Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::mh Namespace Reference

Namespaces

 filter
 
 score
 

Functions

BooleanOptionKey const mh ("mh")
 
StringOptionKey const motif_out_file ("mh:motif_out_file")
 
FileVectorOptionKey const harvest_motifs ("mh:harvest_motifs")
 
FileVectorOptionKey const print_motifs ("mh:print_motifs")
 
FileVectorOptionKey const dump_motif_pdbs ("mh:dump_motif_pdbs")
 
FileVectorOptionKey const merge_motifs ("mh:merge_motifs")
 
BooleanOptionKey const generate_reverse_motifs ("mh:generate_reverse_motifs")
 
FileVectorOptionKey const dump_input_pdb ("mh:dump_input_pdb")
 
FileVectorOptionKey const xform_score_data ("mh:xform_score_data")
 
FileVectorOptionKey const xform_score_data_ee ("mh:xform_score_data_ee")
 
FileVectorOptionKey const xform_score_data_eh ("mh:xform_score_data_eh")
 
FileVectorOptionKey const xform_score_data_he ("mh:xform_score_data_he")
 
FileVectorOptionKey const xform_score_data_hh ("mh:xform_score_data_hh")
 
FileVectorOptionKey const xform_score_data_sspair ("mh:xform_score_data_sspair")
 
FileVectorOptionKey const input_motifs ("mh:input_motifs")
 
FileVectorOptionKey const harvest_scores ("mh:harvest_scores")
 
FileOptionKey const print_scores ("mh:print_scores")
 
FileVectorOptionKey const dump_matching_motifs ("mh:dump_matching_motifs")
 
RealOptionKey const dump_matching_motifs_cutoff ("mh:dump_matching_motifs_cutoff")
 
BooleanOptionKey const score_across_chains_only ("mh:score_across_chains_only")
 
IntegerOptionKey const dump_motif_pdbs_min_counts ("mh:dump_motif_pdbs_min_counts")
 
RealOptionKey const hash_cart_size ("mh:hash_cart_size")
 
RealOptionKey const hash_cart_resl ("mh:hash_cart_resl")
 
RealOptionKey const hash_angle_resl ("mh:hash_angle_resl")
 
IntegerOptionKey const harvest_motifs_min_hh_ends ("mh:harvest_motifs_min_hh_ends")
 
IntegerOptionKey const harvest_scores_min_count ("mh:harvest_scores_min_count")
 
BooleanOptionKey const ignore_io_errors ("mh:ignore_io_errors")
 
RealOptionKey const motif_match_radius ("mh:motif_match_radius")
 
RealVectorOptionKey const merge_similar_motifs ("mh:merge_similar_motifs")
 

Variables

BooleanOptionKey const mh
 
StringOptionKey const motif_out_file
 
FileVectorOptionKey const harvest_motifs
 
FileVectorOptionKey const print_motifs
 
FileVectorOptionKey const dump_motif_pdbs
 
FileVectorOptionKey const merge_motifs
 
BooleanOptionKey const generate_reverse_motifs
 
FileVectorOptionKey const dump_input_pdb
 
FileVectorOptionKey const xform_score_data
 
FileVectorOptionKey const xform_score_data_ee
 
FileVectorOptionKey const xform_score_data_eh
 
FileVectorOptionKey const xform_score_data_he
 
FileVectorOptionKey const xform_score_data_hh
 
FileVectorOptionKey const xform_score_data_sspair
 
FileVectorOptionKey const input_motifs
 
FileVectorOptionKey const harvest_scores
 
FileOptionKey const print_scores
 
FileVectorOptionKey const dump_matching_motifs
 
RealOptionKey const dump_matching_motifs_cutoff
 
BooleanOptionKey const score_across_chains_only
 
IntegerOptionKey const dump_motif_pdbs_min_counts
 
RealOptionKey const hash_cart_size
 
RealOptionKey const hash_cart_resl
 
RealOptionKey const hash_angle_resl
 
IntegerOptionKey const harvest_motifs_min_hh_ends
 
IntegerOptionKey const harvest_scores_min_count
 
BooleanOptionKey const ignore_io_errors
 
RealOptionKey const motif_match_radius
 
RealVectorOptionKey const merge_similar_motifs
 

Function Documentation

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_input_pdb ( "mh:dump_input_pdb"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs ( "mh:dump_matching_motifs"  )
RealOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs_cutoff ( "mh:dump_matching_motifs_cutoff"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs ( "mh:dump_motif_pdbs"  )
IntegerOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs_min_counts ( "mh:dump_motif_pdbs_min_counts"  )
BooleanOptionKey const basic::options::OptionKeys::mh::generate_reverse_motifs ( "mh:generate_reverse_motifs"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_motifs ( "mh:harvest_motifs"  )
IntegerOptionKey const basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends ( "mh:harvest_motifs_min_hh_ends"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_scores ( "mh:harvest_scores"  )
IntegerOptionKey const basic::options::OptionKeys::mh::harvest_scores_min_count ( "mh:harvest_scores_min_count"  )
RealOptionKey const basic::options::OptionKeys::mh::hash_angle_resl ( "mh:hash_angle_resl"  )
RealOptionKey const basic::options::OptionKeys::mh::hash_cart_resl ( "mh:hash_cart_resl"  )
RealOptionKey const basic::options::OptionKeys::mh::hash_cart_size ( "mh:hash_cart_size"  )
BooleanOptionKey const basic::options::OptionKeys::mh::ignore_io_errors ( "mh:ignore_io_errors"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::input_motifs ( "mh:input_motifs"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::merge_motifs ( "mh:merge_motifs"  )
RealVectorOptionKey const basic::options::OptionKeys::mh::merge_similar_motifs ( "mh:merge_similar_motifs"  )
BooleanOptionKey const basic::options::OptionKeys::mh::mh ( "mh"  )
RealOptionKey const basic::options::OptionKeys::mh::motif_match_radius ( "mh:motif_match_radius"  )
StringOptionKey const basic::options::OptionKeys::mh::motif_out_file ( "mh:motif_out_file"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::print_motifs ( "mh:print_motifs"  )
FileOptionKey const basic::options::OptionKeys::mh::print_scores ( "mh:print_scores"  )
BooleanOptionKey const basic::options::OptionKeys::mh::score_across_chains_only ( "mh:score_across_chains_only"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data ( "mh:xform_score_data"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_ee ( "mh:xform_score_data_ee"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_eh ( "mh:xform_score_data_eh"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_he ( "mh:xform_score_data_he"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_hh ( "mh:xform_score_data_hh"  )
FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_sspair ( "mh:xform_score_data_sspair"  )

Variable Documentation

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_input_pdb("mh:dump_input_pdb")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs("mh:dump_matching_motifs")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs_cutoff("mh:dump_matching_motifs_cutoff")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs("mh:dump_motif_pdbs")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs_min_counts("mh:dump_motif_pdbs_min_counts")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::mh::generate_reverse_motifs("mh:generate_reverse_motifs")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_motifs("mh:harvest_motifs")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends("mh:harvest_motifs_min_hh_ends")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_scores("mh:harvest_scores")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_scores_min_count("mh:harvest_scores_min_count")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::mh::hash_angle_resl("mh:hash_angle_resl")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_resl("mh:hash_cart_resl")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_size("mh:hash_cart_size")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::mh::ignore_io_errors("mh:ignore_io_errors")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::input_motifs("mh:input_motifs")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::merge_motifs("mh:merge_motifs")

Referenced by add_rosetta_options_2().

RealVectorOptionKey const basic::options::OptionKeys::mh::merge_similar_motifs("mh:merge_similar_motifs")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::mh::mh("mh")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::mh::motif_match_radius("mh:motif_match_radius")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::mh::motif_out_file("mh:motif_out_file")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::print_motifs("mh:print_motifs")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::mh::print_scores("mh:print_scores")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::mh::score_across_chains_only("mh:score_across_chains_only")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data("mh:xform_score_data")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_ee("mh:xform_score_data_ee")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_eh("mh:xform_score_data_eh")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_he("mh:xform_score_data_he")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_hh("mh:xform_score_data_hh")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_sspair("mh:xform_score_data_sspair")

Referenced by add_rosetta_options_2().