Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::constraints Namespace Reference

Functions

BooleanOptionKey const constraints ("constraints")
 
BooleanOptionKey const exit_on_bad_read ("constraints:exit_on_bad_read")
 
StringVectorOptionKey const cst_file ("constraints:cst_file")
 
RealOptionKey const cst_weight ("constraints:cst_weight")
 
RealOptionKey const max_cst_dist ("constraints:max_cst_dist")
 
StringVectorOptionKey const cst_fa_file ("constraints:cst_fa_file")
 
RealOptionKey const cst_fa_weight ("constraints:cst_fa_weight")
 
BooleanOptionKey const normalize_mixture_func ("constraints:normalize_mixture_func")
 
BooleanOptionKey const penalize_mixture_func ("constraints:penalize_mixture_func")
 
FileOptionKey const forest_file ("constraints:forest_file")
 
BooleanOptionKey const compute_total_dist_cst ("constraints:compute_total_dist_cst")
 
IntegerOptionKey const cull_with_native ("constraints:cull_with_native")
 
FileOptionKey const dump_cst_set ("constraints:dump_cst_set")
 
IntegerVectorOptionKey const evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep")
 
BooleanOptionKey const named ("constraints:named")
 
BooleanOptionKey const no_cst_in_relax ("constraints:no_cst_in_relax")
 
BooleanOptionKey const no_linearize_bounded ("constraints:no_linearize_bounded")
 
RealOptionKey const pocket_constraint_weight ("constraints:pocket_constraint_weight")
 
BooleanOptionKey const pocket_zero_derivatives ("constraints:pocket_zero_derivatives")
 
BooleanOptionKey const viol ("constraints:viol")
 
IntegerOptionKey const viol_level ("constraints:viol_level")
 
StringOptionKey const viol_type ("constraints:viol_type")
 
RealOptionKey const sog_cst_param ("constraints:sog_cst_param")
 
RealOptionKey const sog_upper_bound ("constraints:sog_upper_bound")
 
BooleanOptionKey const epr_distance ("constraints:epr_distance")
 
IntegerOptionKey const combine ("constraints:combine")
 
FileOptionKey const combine_exclude_region ("constraints:combine_exclude_region")
 
BooleanOptionKey const skip_redundant ("constraints:skip_redundant")
 
IntegerOptionKey const skip_redundant_width ("constraints:skip_redundant_width")
 

Variables

BooleanOptionKey const constraints
 
BooleanOptionKey const exit_on_bad_read
 
StringVectorOptionKey const cst_file
 
RealOptionKey const cst_weight
 
RealOptionKey const max_cst_dist
 
StringVectorOptionKey const cst_fa_file
 
RealOptionKey const cst_fa_weight
 
BooleanOptionKey const normalize_mixture_func
 
BooleanOptionKey const penalize_mixture_func
 
FileOptionKey const forest_file
 
BooleanOptionKey const compute_total_dist_cst
 
IntegerOptionKey const cull_with_native
 
FileOptionKey const dump_cst_set
 
IntegerVectorOptionKey const evaluate_max_seq_sep
 
BooleanOptionKey const named
 
BooleanOptionKey const no_cst_in_relax
 
BooleanOptionKey const no_linearize_bounded
 
RealOptionKey const pocket_constraint_weight
 
BooleanOptionKey const pocket_zero_derivatives
 
BooleanOptionKey const viol
 
IntegerOptionKey const viol_level
 
StringOptionKey const viol_type
 
RealOptionKey const sog_cst_param
 
RealOptionKey const sog_upper_bound
 
BooleanOptionKey const epr_distance
 
IntegerOptionKey const combine
 
FileOptionKey const combine_exclude_region
 
BooleanOptionKey const skip_redundant
 
IntegerOptionKey const skip_redundant_width
 

Function Documentation

IntegerOptionKey const basic::options::OptionKeys::constraints::combine ( "constraints:combine"  )
FileOptionKey const basic::options::OptionKeys::constraints::combine_exclude_region ( "constraints:combine_exclude_region"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::compute_total_dist_cst ( "constraints:compute_total_dist_cst"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::constraints ( "constraints"  )
StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_fa_file ( "constraints:cst_fa_file"  )
RealOptionKey const basic::options::OptionKeys::constraints::cst_fa_weight ( "constraints:cst_fa_weight"  )
StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_file ( "constraints:cst_file"  )
RealOptionKey const basic::options::OptionKeys::constraints::cst_weight ( "constraints:cst_weight"  )
IntegerOptionKey const basic::options::OptionKeys::constraints::cull_with_native ( "constraints:cull_with_native"  )
FileOptionKey const basic::options::OptionKeys::constraints::dump_cst_set ( "constraints:dump_cst_set"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::epr_distance ( "constraints:epr_distance"  )
IntegerVectorOptionKey const basic::options::OptionKeys::constraints::evaluate_max_seq_sep ( "constraints:evaluate_max_seq_sep"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::exit_on_bad_read ( "constraints:exit_on_bad_read"  )
FileOptionKey const basic::options::OptionKeys::constraints::forest_file ( "constraints:forest_file"  )
RealOptionKey const basic::options::OptionKeys::constraints::max_cst_dist ( "constraints:max_cst_dist"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::named ( "constraints:named"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::no_cst_in_relax ( "constraints:no_cst_in_relax"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::no_linearize_bounded ( "constraints:no_linearize_bounded"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::normalize_mixture_func ( "constraints:normalize_mixture_func"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::penalize_mixture_func ( "constraints:penalize_mixture_func"  )
RealOptionKey const basic::options::OptionKeys::constraints::pocket_constraint_weight ( "constraints:pocket_constraint_weight"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::pocket_zero_derivatives ( "constraints:pocket_zero_derivatives"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::skip_redundant ( "constraints:skip_redundant"  )
IntegerOptionKey const basic::options::OptionKeys::constraints::skip_redundant_width ( "constraints:skip_redundant_width"  )
RealOptionKey const basic::options::OptionKeys::constraints::sog_cst_param ( "constraints:sog_cst_param"  )
RealOptionKey const basic::options::OptionKeys::constraints::sog_upper_bound ( "constraints:sog_upper_bound"  )
BooleanOptionKey const basic::options::OptionKeys::constraints::viol ( "constraints:viol"  )
IntegerOptionKey const basic::options::OptionKeys::constraints::viol_level ( "constraints:viol_level"  )
StringOptionKey const basic::options::OptionKeys::constraints::viol_type ( "constraints:viol_type"  )

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::constraints::combine("constraints:combine")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::constraints::combine_exclude_region("constraints:combine_exclude_region")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::compute_total_dist_cst("constraints:compute_total_dist_cst")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::constraints("constraints")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_fa_file("constraints:cst_fa_file")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::cst_fa_weight("constraints:cst_fa_weight")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_file("constraints:cst_file")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::cst_weight("constraints:cst_weight")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::constraints::cull_with_native("constraints:cull_with_native")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::constraints::dump_cst_set("constraints:dump_cst_set")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::epr_distance("constraints:epr_distance")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::constraints::evaluate_max_seq_sep("constraints:evaluate_max_seq_sep")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::exit_on_bad_read("constraints:exit_on_bad_read")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::constraints::forest_file("constraints:forest_file")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::max_cst_dist("constraints:max_cst_dist")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::named("constraints:named")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::no_cst_in_relax("constraints:no_cst_in_relax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::no_linearize_bounded("constraints:no_linearize_bounded")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::normalize_mixture_func("constraints:normalize_mixture_func")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::penalize_mixture_func("constraints:penalize_mixture_func")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::pocket_constraint_weight("constraints:pocket_constraint_weight")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::pocket_zero_derivatives("constraints:pocket_zero_derivatives")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::skip_redundant("constraints:skip_redundant")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::constraints::skip_redundant_width("constraints:skip_redundant_width")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::sog_cst_param("constraints:sog_cst_param")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::constraints::sog_upper_bound("constraints:sog_upper_bound")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::constraints::viol("constraints:viol")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::constraints::viol_level("constraints:viol_level")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::constraints::viol_type("constraints:viol_type")

Referenced by add_rosetta_options_0().