Rosetta Utilities  2014.35
Namespaces | Variables
basic::options::OptionKeys::remodel Namespace Reference

Namespaces

 design
 
 domainFusion
 
 RemodelLoopMover
 
 staged_sampling
 

Variables

BooleanOptionKey const remodel ("remodel")
 
FileOptionKey const blueprint ("remodel:blueprint")
 
IntegerOptionKey const cstfilter ("remodel:cstfilter")
 
StringOptionKey const cen_sfxn ("remodel:cen_sfxn")
 
BooleanOptionKey const check_scored_centroid ("remodel:check_scored_centroid")
 
IntegerOptionKey const num_trajectory ("remodel:num_trajectory")
 
IntegerOptionKey const save_top ("remodel:save_top")
 
BooleanOptionKey const swap_refine_confirm_protocols ("remodel:swap_refine_confirm_protocols")
 
BooleanOptionKey const bypass_fragments ("remodel:bypass_fragments")
 
BooleanOptionKey const use_same_length_fragments ("remodel:use_same_length_fragments")
 
BooleanOptionKey const no_jumps ("remodel:no_jumps")
 
BooleanOptionKey const use_blueprint_sequence ("remodel:use_blueprint_sequence ")
 
BooleanOptionKey const quick_and_dirty ("remodel:quick_and_dirty ")
 
BooleanOptionKey const checkpoint ("remodel:checkpoint ")
 
BooleanOptionKey const use_pose_relax ("remodel:use_pose_relax ")
 
BooleanOptionKey const use_cart_relax ("remodel:use_cart_relax ")
 
BooleanOptionKey const free_relax ("remodel:free_relax ")
 
StringOptionKey const generic_aa ("remodel:generic_aa")
 
RealOptionKey const cluster_radius ("remodel:cluster_radius")
 
BooleanOptionKey const use_clusters ("remodel:use_clusters")
 
BooleanOptionKey const run_confirmation ("remodel:run_confirmation")
 
BooleanOptionKey const cluster_on_entire_pose ("remodel:cluster_on_entire_pose")
 
IntegerOptionKey const dr_cycles ("remodel:dr_cycles")
 
IntegerOptionKey const two_chain_tree ("remodel:two_chain_tree")
 
IntegerOptionKey const repeat_structure ("remodel:repeat_structure")
 
IntegerOptionKey const lh_ex_limit ("remodel:lh_ex_limit")
 
StringVectorOptionKey const lh_filter_string ("remodel:lh_filter_string")
 
IntegerOptionKey const lh_cbreak_selection ("remodel:lh_cbreak_selection")
 
BooleanOptionKey const lh_closure_filter ("remodel:lh_closure_filter")
 
BooleanOptionKey const cen_minimize ("remodel:cen_minimize")
 
IntegerOptionKey const core_cutoff ("remodel:core_cutoff")
 
IntegerOptionKey const boundary_cutoff ("remodel:boundary_cutoff")
 
BooleanOptionKey const resclass_by_sasa ("remodel:resclass_by_sasa")
 
RealOptionKey const helical_rise ("remodel:helical_rise")
 
RealOptionKey const helical_radius ("remodel:helical_radius")
 
RealOptionKey const helical_omega ("remodel:helical_omega")
 
RealOptionKey const COM_sd ("remodel:COM_sd")
 
RealOptionKey const COM_tolerance ("remodel:COM_tolerance")
 
RealOptionKey const vdw ("remodel:vdw")
 
RealOptionKey const rama ("remodel:rama")
 
RealOptionKey const cbeta ("remodel:cbeta")
 
RealOptionKey const cenpack ("remodel:cenpack")
 
RealOptionKey const rg_local ("remodel:rg_local")
 
RealOptionKey const hb_lrbb ("remodel:hb_lrbb")
 
RealOptionKey const hb_srbb ("remodel:hb_srbb")
 
RealOptionKey const rg ("remodel:rg")
 
RealOptionKey const rsigma ("remodel:rsigma")
 
RealOptionKey const ss_pair ("remodel:ss_pair")
 
BooleanOptionKey const build_disulf ("remodel:build_disulf")
 
RealOptionKey const match_rt_limit ("remodel:match_rt_limit")
 
IntegerVectorOptionKey const disulf_landing_range ("remodel:disulf_landing_range")
 

Variable Documentation

FileOptionKey const basic::options::OptionKeys::remodel::blueprint
IntegerOptionKey const basic::options::OptionKeys::remodel::boundary_cutoff

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::build_disulf

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::bypass_fragments

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::cbeta

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::cen_minimize

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::remodel::cen_sfxn

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::cenpack

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::check_scored_centroid

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::checkpoint
BooleanOptionKey const basic::options::OptionKeys::remodel::cluster_on_entire_pose

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::cluster_radius

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::COM_sd

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::COM_tolerance

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::core_cutoff

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::cstfilter

Referenced by add_rosetta_options_3().

IntegerVectorOptionKey const basic::options::OptionKeys::remodel::disulf_landing_range

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::dr_cycles

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::free_relax

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::remodel::generic_aa

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::hb_lrbb

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::hb_srbb

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::helical_omega

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::helical_radius

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::helical_rise

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_cbreak_selection

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::lh_closure_filter

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_ex_limit

Referenced by add_rosetta_options_3().

StringVectorOptionKey const basic::options::OptionKeys::remodel::lh_filter_string

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::match_rt_limit

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::no_jumps

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::num_trajectory

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::quick_and_dirty
RealOptionKey const basic::options::OptionKeys::remodel::rama

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::remodel
IntegerOptionKey const basic::options::OptionKeys::remodel::repeat_structure

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::resclass_by_sasa

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::rg

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::rg_local

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::rsigma

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::run_confirmation

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::save_top

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::ss_pair

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::swap_refine_confirm_protocols

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::remodel::two_chain_tree

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_blueprint_sequence

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_cart_relax

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_clusters

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_pose_relax

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_same_length_fragments

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::remodel::vdw

Referenced by add_rosetta_options_3().