Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::ddg Namespace Reference

Functions

BooleanOptionKey const ddg ("ddg")
 
BooleanOptionKey const opt_input_structure ("ddg:opt_input_structure")
 
BooleanOptionKey const pack_until_converge ("ddg:pack_until_converge")
 
BooleanOptionKey const no_constraints ("ddg:no_constraints")
 
BooleanOptionKey const use_rotamer_constraints_to_native ("ddg:use_rotamer_constraints_to_native")
 
BooleanOptionKey const suppress_checkpointing ("ddg:suppress_checkpointing")
 
BooleanOptionKey const wt_only ("ddg:wt_only")
 
BooleanOptionKey const mut_only ("ddg:mut_only")
 
BooleanOptionKey const output_silent ("ddg:output_silent")
 
StringOptionKey const minimization_scorefunction ("ddg:minimization_scorefunction")
 
StringOptionKey const minimization_patch ("ddg:minimization_patch")
 
BooleanOptionKey const min_cst ("ddg:min_cst")
 
IntegerOptionKey const lowest_x_decoys ("ddg:lowest_x_decoys")
 
BooleanOptionKey const local_opt_only ("ddg:local_opt_only")
 
BooleanOptionKey const print_per_res_diff ("ddg:print_per_res_diff")
 
BooleanOptionKey const mean ("ddg:mean")
 
BooleanOptionKey const min ("ddg:min")
 
BooleanOptionKey const no_bb_movement ("ddg:no_bb_movement")
 
BooleanOptionKey const initial_repack ("ddg:initial_repack")
 
IntegerOptionKey const interface_ddg ("ddg:interface_ddg")
 
RealOptionKey const ens_variation ("ddg:ens_variation")
 
BooleanOptionKey const sc_min_only ("ddg:sc_min_only")
 
StringOptionKey const min_cst_weights ("ddg:min_cst_weights")
 
RealOptionKey const opt_radius ("ddg:opt_radius")
 
StringOptionKey const output_dir ("ddg:output_dir")
 
StringOptionKey const last_accepted_pose_dir ("ddg:last_accepted_pose_dir")
 
BooleanOptionKey const min_with_cst ("ddg:min_with_cst")
 
RealOptionKey const temperature ("ddg:temperature")
 
BooleanOptionKey const ramp_repulsive ("ddg:ramp_repulsive")
 
StringOptionKey const mut_file ("ddg:mut_file")
 
StringOptionKey const out_pdb_prefix ("ddg:out_pdb_prefix")
 
RealOptionKey const constraint_weight ("ddg:constraint_weight")
 
RealOptionKey const harmonic_ca_tether ("ddg:harmonic_ca_tether")
 
IntegerOptionKey const iterations ("ddg:iterations")
 
StringOptionKey const out ("ddg:out")
 
BooleanOptionKey const debug_output ("ddg:debug_output")
 
BooleanOptionKey const dump_pdbs ("ddg:dump_pdbs")
 
StringOptionKey const weight_file ("ddg:weight_file")
 

Variables

BooleanOptionKey const ddg
 
BooleanOptionKey const opt_input_structure
 
BooleanOptionKey const pack_until_converge
 
BooleanOptionKey const no_constraints
 
BooleanOptionKey const use_rotamer_constraints_to_native
 
BooleanOptionKey const suppress_checkpointing
 
BooleanOptionKey const wt_only
 
BooleanOptionKey const mut_only
 
BooleanOptionKey const output_silent
 
StringOptionKey const minimization_scorefunction
 
StringOptionKey const minimization_patch
 
BooleanOptionKey const min_cst
 
IntegerOptionKey const lowest_x_decoys
 
BooleanOptionKey const local_opt_only
 
BooleanOptionKey const print_per_res_diff
 
BooleanOptionKey const mean
 
BooleanOptionKey const min
 
BooleanOptionKey const no_bb_movement
 
BooleanOptionKey const initial_repack
 
IntegerOptionKey const interface_ddg
 
RealOptionKey const ens_variation
 
BooleanOptionKey const sc_min_only
 
StringOptionKey const min_cst_weights
 
RealOptionKey const opt_radius
 
StringOptionKey const output_dir
 
StringOptionKey const last_accepted_pose_dir
 
BooleanOptionKey const min_with_cst
 
RealOptionKey const temperature
 
BooleanOptionKey const ramp_repulsive
 
StringOptionKey const mut_file
 
StringOptionKey const out_pdb_prefix
 
RealOptionKey const constraint_weight
 
RealOptionKey const harmonic_ca_tether
 
IntegerOptionKey const iterations
 
StringOptionKey const out
 
BooleanOptionKey const debug_output
 
BooleanOptionKey const dump_pdbs
 
StringOptionKey const weight_file
 

Function Documentation

RealOptionKey const basic::options::OptionKeys::ddg::constraint_weight ( "ddg:constraint_weight"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::ddg ( "ddg"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::debug_output ( "ddg:debug_output"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::dump_pdbs ( "ddg:dump_pdbs"  )
RealOptionKey const basic::options::OptionKeys::ddg::ens_variation ( "ddg:ens_variation"  )
RealOptionKey const basic::options::OptionKeys::ddg::harmonic_ca_tether ( "ddg:harmonic_ca_tether"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::initial_repack ( "ddg:initial_repack"  )
IntegerOptionKey const basic::options::OptionKeys::ddg::interface_ddg ( "ddg:interface_ddg"  )
IntegerOptionKey const basic::options::OptionKeys::ddg::iterations ( "ddg:iterations"  )
StringOptionKey const basic::options::OptionKeys::ddg::last_accepted_pose_dir ( "ddg:last_accepted_pose_dir"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::local_opt_only ( "ddg:local_opt_only"  )
IntegerOptionKey const basic::options::OptionKeys::ddg::lowest_x_decoys ( "ddg:lowest_x_decoys"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::mean ( "ddg:mean"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::min ( "ddg:min"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::min_cst ( "ddg:min_cst"  )
StringOptionKey const basic::options::OptionKeys::ddg::min_cst_weights ( "ddg:min_cst_weights"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::min_with_cst ( "ddg:min_with_cst"  )
StringOptionKey const basic::options::OptionKeys::ddg::minimization_patch ( "ddg:minimization_patch"  )
StringOptionKey const basic::options::OptionKeys::ddg::minimization_scorefunction ( "ddg:minimization_scorefunction"  )
StringOptionKey const basic::options::OptionKeys::ddg::mut_file ( "ddg:mut_file"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::mut_only ( "ddg:mut_only"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::no_bb_movement ( "ddg:no_bb_movement"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::no_constraints ( "ddg:no_constraints"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::opt_input_structure ( "ddg:opt_input_structure"  )
RealOptionKey const basic::options::OptionKeys::ddg::opt_radius ( "ddg:opt_radius"  )
StringOptionKey const basic::options::OptionKeys::ddg::out ( "ddg:out"  )
StringOptionKey const basic::options::OptionKeys::ddg::out_pdb_prefix ( "ddg:out_pdb_prefix"  )
StringOptionKey const basic::options::OptionKeys::ddg::output_dir ( "ddg:output_dir"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::output_silent ( "ddg:output_silent"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::pack_until_converge ( "ddg:pack_until_converge"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::print_per_res_diff ( "ddg:print_per_res_diff"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::ramp_repulsive ( "ddg:ramp_repulsive"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::sc_min_only ( "ddg:sc_min_only"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::suppress_checkpointing ( "ddg:suppress_checkpointing"  )
RealOptionKey const basic::options::OptionKeys::ddg::temperature ( "ddg:temperature"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::use_rotamer_constraints_to_native ( "ddg:use_rotamer_constraints_to_native"  )
StringOptionKey const basic::options::OptionKeys::ddg::weight_file ( "ddg:weight_file"  )
BooleanOptionKey const basic::options::OptionKeys::ddg::wt_only ( "ddg:wt_only"  )

Variable Documentation

RealOptionKey const basic::options::OptionKeys::ddg::constraint_weight("ddg:constraint_weight")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::ddg("ddg")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::debug_output("ddg:debug_output")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::dump_pdbs("ddg:dump_pdbs")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::ddg::ens_variation("ddg:ens_variation")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::ddg::harmonic_ca_tether("ddg:harmonic_ca_tether")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::initial_repack("ddg:initial_repack")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::ddg::interface_ddg("ddg:interface_ddg")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::ddg::iterations("ddg:iterations")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::last_accepted_pose_dir("ddg:last_accepted_pose_dir")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::local_opt_only("ddg:local_opt_only")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::ddg::lowest_x_decoys("ddg:lowest_x_decoys")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::mean("ddg:mean")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::min("ddg:min")
BooleanOptionKey const basic::options::OptionKeys::ddg::min_cst("ddg:min_cst")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::min_cst_weights("ddg:min_cst_weights")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::min_with_cst("ddg:min_with_cst")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::minimization_patch("ddg:minimization_patch")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::minimization_scorefunction("ddg:minimization_scorefunction")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::mut_file("ddg:mut_file")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::mut_only("ddg:mut_only")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::no_bb_movement("ddg:no_bb_movement")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::no_constraints("ddg:no_constraints")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::opt_input_structure("ddg:opt_input_structure")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::ddg::opt_radius("ddg:opt_radius")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::out("ddg:out")
StringOptionKey const basic::options::OptionKeys::ddg::out_pdb_prefix("ddg:out_pdb_prefix")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::output_dir("ddg:output_dir")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::output_silent("ddg:output_silent")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::pack_until_converge("ddg:pack_until_converge")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::print_per_res_diff("ddg:print_per_res_diff")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::ramp_repulsive("ddg:ramp_repulsive")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::sc_min_only("ddg:sc_min_only")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::suppress_checkpointing("ddg:suppress_checkpointing")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::ddg::temperature("ddg:temperature")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::use_rotamer_constraints_to_native("ddg:use_rotamer_constraints_to_native")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::ddg::weight_file("ddg:weight_file")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::ddg::wt_only("ddg:wt_only")

Referenced by add_rosetta_options_1().