Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::jumps Namespace Reference

Functions

BooleanOptionKey const jumps ("jumps")
 
BooleanOptionKey const evaluate ("jumps:evaluate")
 
FileOptionKey const extra_frags_for_ss ("jumps:extra_frags_for_ss")
 
BooleanOptionKey const fix_chainbreak ("jumps:fix_chainbreak")
 
FileOptionKey const fix_jumps ("jumps:fix_jumps")
 
FileOptionKey const jump_lib ("jumps:jump_lib")
 
FileOptionKey const loop_definition_from_file ("jumps:loop_definition_from_file")
 
BooleanOptionKey const no_chainbreak_in_relax ("jumps:no_chainbreak_in_relax")
 
FileOptionKey const pairing_file ("jumps:pairing_file")
 
IntegerVectorOptionKey const random_sheets ("jumps:random_sheets")
 
FileOptionKey const residue_pair_jump_file ("jumps:residue_pair_jump_file")
 
IntegerVectorOptionKey const sheets ("jumps:sheets")
 
FileOptionKey const topology_file ("jumps:topology_file")
 
BooleanOptionKey const bb_moves ("jumps:bb_moves")
 
BooleanOptionKey const no_wobble ("jumps:no_wobble")
 
BooleanOptionKey const no_shear ("jumps:no_shear")
 
BooleanOptionKey const no_sample_ss_jumps ("jumps:no_sample_ss_jumps")
 
IntegerOptionKey const invrate_jump_move ("jumps:invrate_jump_move")
 
RealOptionKey const chainbreak_weight_stage1 ("jumps:chainbreak_weight_stage1")
 
RealOptionKey const chainbreak_weight_stage2 ("jumps:chainbreak_weight_stage2")
 
RealOptionKey const chainbreak_weight_stage3 ("jumps:chainbreak_weight_stage3")
 
RealOptionKey const chainbreak_weight_stage4 ("jumps:chainbreak_weight_stage4")
 
BooleanOptionKey const ramp_chainbreaks ("jumps:ramp_chainbreaks")
 
RealOptionKey const increase_chainbreak ("jumps:increase_chainbreak")
 
BooleanOptionKey const overlap_chainbreak ("jumps:overlap_chainbreak")
 
RealOptionKey const sep_switch_accelerate ("jumps:sep_switch_accelerate")
 
BooleanOptionKey const dump_frags ("jumps:dump_frags")
 
IntegerOptionKey const njumps ("jumps:njumps")
 
IntegerOptionKey const max_strand_gap_allowed ("jumps:max_strand_gap_allowed")
 
RealOptionKey const contact_score ("jumps:contact_score")
 
BooleanOptionKey const filter_templates ("jumps:filter_templates")
 

Variables

BooleanOptionKey const jumps
 
BooleanOptionKey const evaluate
 
FileOptionKey const extra_frags_for_ss
 
BooleanOptionKey const fix_chainbreak
 
FileOptionKey const fix_jumps
 
FileOptionKey const jump_lib
 
FileOptionKey const loop_definition_from_file
 
BooleanOptionKey const no_chainbreak_in_relax
 
FileOptionKey const pairing_file
 
IntegerVectorOptionKey const random_sheets
 
FileOptionKey const residue_pair_jump_file
 
IntegerVectorOptionKey const sheets
 
FileOptionKey const topology_file
 
BooleanOptionKey const bb_moves
 
BooleanOptionKey const no_wobble
 
BooleanOptionKey const no_shear
 
BooleanOptionKey const no_sample_ss_jumps
 
IntegerOptionKey const invrate_jump_move
 
RealOptionKey const chainbreak_weight_stage1
 
RealOptionKey const chainbreak_weight_stage2
 
RealOptionKey const chainbreak_weight_stage3
 
RealOptionKey const chainbreak_weight_stage4
 
BooleanOptionKey const ramp_chainbreaks
 
RealOptionKey const increase_chainbreak
 
BooleanOptionKey const overlap_chainbreak
 
RealOptionKey const sep_switch_accelerate
 
BooleanOptionKey const dump_frags
 
IntegerOptionKey const njumps
 
IntegerOptionKey const max_strand_gap_allowed
 
RealOptionKey const contact_score
 
BooleanOptionKey const filter_templates
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::jumps::bb_moves ( "jumps:bb_moves"  )
RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage1 ( "jumps:chainbreak_weight_stage1"  )
RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage2 ( "jumps:chainbreak_weight_stage2"  )
RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage3 ( "jumps:chainbreak_weight_stage3"  )
RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage4 ( "jumps:chainbreak_weight_stage4"  )
RealOptionKey const basic::options::OptionKeys::jumps::contact_score ( "jumps:contact_score"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::dump_frags ( "jumps:dump_frags"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::evaluate ( "jumps:evaluate"  )
FileOptionKey const basic::options::OptionKeys::jumps::extra_frags_for_ss ( "jumps:extra_frags_for_ss"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::filter_templates ( "jumps:filter_templates"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::fix_chainbreak ( "jumps:fix_chainbreak"  )
FileOptionKey const basic::options::OptionKeys::jumps::fix_jumps ( "jumps:fix_jumps"  )
RealOptionKey const basic::options::OptionKeys::jumps::increase_chainbreak ( "jumps:increase_chainbreak"  )
IntegerOptionKey const basic::options::OptionKeys::jumps::invrate_jump_move ( "jumps:invrate_jump_move"  )
FileOptionKey const basic::options::OptionKeys::jumps::jump_lib ( "jumps:jump_lib"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::jumps ( "jumps"  )
FileOptionKey const basic::options::OptionKeys::jumps::loop_definition_from_file ( "jumps:loop_definition_from_file"  )
IntegerOptionKey const basic::options::OptionKeys::jumps::max_strand_gap_allowed ( "jumps:max_strand_gap_allowed"  )
IntegerOptionKey const basic::options::OptionKeys::jumps::njumps ( "jumps:njumps"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::no_chainbreak_in_relax ( "jumps:no_chainbreak_in_relax"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::no_sample_ss_jumps ( "jumps:no_sample_ss_jumps"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::no_shear ( "jumps:no_shear"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::no_wobble ( "jumps:no_wobble"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::overlap_chainbreak ( "jumps:overlap_chainbreak"  )
FileOptionKey const basic::options::OptionKeys::jumps::pairing_file ( "jumps:pairing_file"  )
BooleanOptionKey const basic::options::OptionKeys::jumps::ramp_chainbreaks ( "jumps:ramp_chainbreaks"  )
IntegerVectorOptionKey const basic::options::OptionKeys::jumps::random_sheets ( "jumps:random_sheets"  )
FileOptionKey const basic::options::OptionKeys::jumps::residue_pair_jump_file ( "jumps:residue_pair_jump_file"  )
RealOptionKey const basic::options::OptionKeys::jumps::sep_switch_accelerate ( "jumps:sep_switch_accelerate"  )
IntegerVectorOptionKey const basic::options::OptionKeys::jumps::sheets ( "jumps:sheets"  )
FileOptionKey const basic::options::OptionKeys::jumps::topology_file ( "jumps:topology_file"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::jumps::bb_moves("jumps:bb_moves")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage1("jumps:chainbreak_weight_stage1")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage2("jumps:chainbreak_weight_stage2")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage3("jumps:chainbreak_weight_stage3")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage4("jumps:chainbreak_weight_stage4")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::contact_score("jumps:contact_score")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::dump_frags("jumps:dump_frags")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::evaluate("jumps:evaluate")
FileOptionKey const basic::options::OptionKeys::jumps::extra_frags_for_ss("jumps:extra_frags_for_ss")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::filter_templates("jumps:filter_templates")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::fix_chainbreak("jumps:fix_chainbreak")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::jumps::fix_jumps("jumps:fix_jumps")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::increase_chainbreak("jumps:increase_chainbreak")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::jumps::invrate_jump_move("jumps:invrate_jump_move")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::jumps::jump_lib("jumps:jump_lib")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::jumps("jumps")
FileOptionKey const basic::options::OptionKeys::jumps::loop_definition_from_file("jumps:loop_definition_from_file")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::jumps::max_strand_gap_allowed("jumps:max_strand_gap_allowed")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::jumps::njumps("jumps:njumps")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::no_chainbreak_in_relax("jumps:no_chainbreak_in_relax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::no_sample_ss_jumps("jumps:no_sample_ss_jumps")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::no_shear("jumps:no_shear")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::no_wobble("jumps:no_wobble")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::overlap_chainbreak("jumps:overlap_chainbreak")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::jumps::pairing_file("jumps:pairing_file")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::jumps::ramp_chainbreaks("jumps:ramp_chainbreaks")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::jumps::random_sheets("jumps:random_sheets")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::jumps::residue_pair_jump_file("jumps:residue_pair_jump_file")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::jumps::sep_switch_accelerate("jumps:sep_switch_accelerate")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::jumps::sheets("jumps:sheets")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::jumps::topology_file("jumps:topology_file")

Referenced by add_rosetta_options_0().