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Rosetta Utilities
2014.35
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Rosetta Utilities
2014.35
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Functions | |
| BooleanOptionKey const | jumps ("jumps") |
| BooleanOptionKey const | evaluate ("jumps:evaluate") |
| FileOptionKey const | extra_frags_for_ss ("jumps:extra_frags_for_ss") |
| BooleanOptionKey const | fix_chainbreak ("jumps:fix_chainbreak") |
| FileOptionKey const | fix_jumps ("jumps:fix_jumps") |
| FileOptionKey const | jump_lib ("jumps:jump_lib") |
| FileOptionKey const | loop_definition_from_file ("jumps:loop_definition_from_file") |
| BooleanOptionKey const | no_chainbreak_in_relax ("jumps:no_chainbreak_in_relax") |
| FileOptionKey const | pairing_file ("jumps:pairing_file") |
| IntegerVectorOptionKey const | random_sheets ("jumps:random_sheets") |
| FileOptionKey const | residue_pair_jump_file ("jumps:residue_pair_jump_file") |
| IntegerVectorOptionKey const | sheets ("jumps:sheets") |
| FileOptionKey const | topology_file ("jumps:topology_file") |
| BooleanOptionKey const | bb_moves ("jumps:bb_moves") |
| BooleanOptionKey const | no_wobble ("jumps:no_wobble") |
| BooleanOptionKey const | no_shear ("jumps:no_shear") |
| BooleanOptionKey const | no_sample_ss_jumps ("jumps:no_sample_ss_jumps") |
| IntegerOptionKey const | invrate_jump_move ("jumps:invrate_jump_move") |
| RealOptionKey const | chainbreak_weight_stage1 ("jumps:chainbreak_weight_stage1") |
| RealOptionKey const | chainbreak_weight_stage2 ("jumps:chainbreak_weight_stage2") |
| RealOptionKey const | chainbreak_weight_stage3 ("jumps:chainbreak_weight_stage3") |
| RealOptionKey const | chainbreak_weight_stage4 ("jumps:chainbreak_weight_stage4") |
| BooleanOptionKey const | ramp_chainbreaks ("jumps:ramp_chainbreaks") |
| RealOptionKey const | increase_chainbreak ("jumps:increase_chainbreak") |
| BooleanOptionKey const | overlap_chainbreak ("jumps:overlap_chainbreak") |
| RealOptionKey const | sep_switch_accelerate ("jumps:sep_switch_accelerate") |
| BooleanOptionKey const | dump_frags ("jumps:dump_frags") |
| IntegerOptionKey const | njumps ("jumps:njumps") |
| IntegerOptionKey const | max_strand_gap_allowed ("jumps:max_strand_gap_allowed") |
| RealOptionKey const | contact_score ("jumps:contact_score") |
| BooleanOptionKey const | filter_templates ("jumps:filter_templates") |
| BooleanOptionKey const basic::options::OptionKeys::jumps::bb_moves | ( | "jumps:bb_moves" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage1 | ( | "jumps:chainbreak_weight_stage1" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage2 | ( | "jumps:chainbreak_weight_stage2" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage3 | ( | "jumps:chainbreak_weight_stage3" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage4 | ( | "jumps:chainbreak_weight_stage4" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::contact_score | ( | "jumps:contact_score" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::dump_frags | ( | "jumps:dump_frags" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::evaluate | ( | "jumps:evaluate" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::extra_frags_for_ss | ( | "jumps:extra_frags_for_ss" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::filter_templates | ( | "jumps:filter_templates" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::fix_chainbreak | ( | "jumps:fix_chainbreak" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::fix_jumps | ( | "jumps:fix_jumps" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::increase_chainbreak | ( | "jumps:increase_chainbreak" | ) |
| IntegerOptionKey const basic::options::OptionKeys::jumps::invrate_jump_move | ( | "jumps:invrate_jump_move" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::jump_lib | ( | "jumps:jump_lib" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::jumps | ( | "jumps" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::loop_definition_from_file | ( | "jumps:loop_definition_from_file" | ) |
| IntegerOptionKey const basic::options::OptionKeys::jumps::max_strand_gap_allowed | ( | "jumps:max_strand_gap_allowed" | ) |
| IntegerOptionKey const basic::options::OptionKeys::jumps::njumps | ( | "jumps:njumps" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_chainbreak_in_relax | ( | "jumps:no_chainbreak_in_relax" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_sample_ss_jumps | ( | "jumps:no_sample_ss_jumps" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_shear | ( | "jumps:no_shear" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_wobble | ( | "jumps:no_wobble" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::overlap_chainbreak | ( | "jumps:overlap_chainbreak" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::pairing_file | ( | "jumps:pairing_file" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::ramp_chainbreaks | ( | "jumps:ramp_chainbreaks" | ) |
| IntegerVectorOptionKey const basic::options::OptionKeys::jumps::random_sheets | ( | "jumps:random_sheets" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::residue_pair_jump_file | ( | "jumps:residue_pair_jump_file" | ) |
| RealOptionKey const basic::options::OptionKeys::jumps::sep_switch_accelerate | ( | "jumps:sep_switch_accelerate" | ) |
| IntegerVectorOptionKey const basic::options::OptionKeys::jumps::sheets | ( | "jumps:sheets" | ) |
| FileOptionKey const basic::options::OptionKeys::jumps::topology_file | ( | "jumps:topology_file" | ) |
| BooleanOptionKey const basic::options::OptionKeys::jumps::bb_moves("jumps:bb_moves") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage1("jumps:chainbreak_weight_stage1") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage2("jumps:chainbreak_weight_stage2") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage3("jumps:chainbreak_weight_stage3") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage4("jumps:chainbreak_weight_stage4") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::contact_score("jumps:contact_score") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::dump_frags("jumps:dump_frags") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::evaluate("jumps:evaluate") |
Referenced by add_rosetta_options_0(), and numeric::nls::lmmin().
| FileOptionKey const basic::options::OptionKeys::jumps::extra_frags_for_ss("jumps:extra_frags_for_ss") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::filter_templates("jumps:filter_templates") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::fix_chainbreak("jumps:fix_chainbreak") |
Referenced by add_rosetta_options_0().
| FileOptionKey const basic::options::OptionKeys::jumps::fix_jumps("jumps:fix_jumps") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::increase_chainbreak("jumps:increase_chainbreak") |
Referenced by add_rosetta_options_0().
| IntegerOptionKey const basic::options::OptionKeys::jumps::invrate_jump_move("jumps:invrate_jump_move") |
Referenced by add_rosetta_options_0().
| FileOptionKey const basic::options::OptionKeys::jumps::jump_lib("jumps:jump_lib") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::jumps("jumps") |
Referenced by add_rosetta_options_0(), and add_rosetta_options_3().
| FileOptionKey const basic::options::OptionKeys::jumps::loop_definition_from_file("jumps:loop_definition_from_file") |
Referenced by add_rosetta_options_0().
| IntegerOptionKey const basic::options::OptionKeys::jumps::max_strand_gap_allowed("jumps:max_strand_gap_allowed") |
Referenced by add_rosetta_options_0().
| IntegerOptionKey const basic::options::OptionKeys::jumps::njumps("jumps:njumps") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_chainbreak_in_relax("jumps:no_chainbreak_in_relax") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_sample_ss_jumps("jumps:no_sample_ss_jumps") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_shear("jumps:no_shear") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::no_wobble("jumps:no_wobble") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::overlap_chainbreak("jumps:overlap_chainbreak") |
Referenced by add_rosetta_options_0().
| FileOptionKey const basic::options::OptionKeys::jumps::pairing_file("jumps:pairing_file") |
Referenced by add_rosetta_options_0().
| BooleanOptionKey const basic::options::OptionKeys::jumps::ramp_chainbreaks("jumps:ramp_chainbreaks") |
Referenced by add_rosetta_options_0().
| IntegerVectorOptionKey const basic::options::OptionKeys::jumps::random_sheets("jumps:random_sheets") |
Referenced by add_rosetta_options_0().
| FileOptionKey const basic::options::OptionKeys::jumps::residue_pair_jump_file("jumps:residue_pair_jump_file") |
Referenced by add_rosetta_options_0().
| RealOptionKey const basic::options::OptionKeys::jumps::sep_switch_accelerate("jumps:sep_switch_accelerate") |
Referenced by add_rosetta_options_0().
| IntegerVectorOptionKey const basic::options::OptionKeys::jumps::sheets("jumps:sheets") |
Referenced by add_rosetta_options_0().
| FileOptionKey const basic::options::OptionKeys::jumps::topology_file("jumps:topology_file") |
Referenced by add_rosetta_options_0().
1.8.7