Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::antibody Namespace Reference

Namespaces

 design
 

Functions

BooleanOptionKey const antibody ("antibody")
 
StringOptionKey const numbering_scheme ("antibody:numbering_scheme")
 
StringOptionKey const cdr_definition ("antibody:cdr_definition")
 
BooleanOptionKey const check_cdr_chainbreaks ("antibody:check_cdr_chainbreaks")
 
BooleanOptionKey const check_cdr_pep_bond_geom ("antibody:check_cdr_pep_bond_geom")
 
BooleanOptionKey const graft_l1 ("antibody:graft_l1")
 
BooleanOptionKey const graft_l2 ("antibody:graft_l2")
 
BooleanOptionKey const graft_l3 ("antibody:graft_l3")
 
BooleanOptionKey const graft_h1 ("antibody:graft_h1")
 
BooleanOptionKey const graft_h2 ("antibody:graft_h2")
 
BooleanOptionKey const graft_h3 ("antibody:graft_h3")
 
BooleanOptionKey const h3_no_stem_graft ("antibody:h3_no_stem_graft")
 
BooleanOptionKey const packonly_after_graft ("antibody:packonly_after_graft")
 
BooleanOptionKey const stem_optimize ("antibody:stem_optimize")
 
IntegerOptionKey const stem_optimize_size ("antibody:stem_optimize_size")
 
StringOptionKey const preprocessing_script_version ("antibody:preprocessing_script_version")
 
BooleanOptionKey const model_h3 ("antibody:model_h3")
 
BooleanOptionKey const snugfit ("antibody:snugfit")
 
BooleanOptionKey const refine_h3 ("antibody:refine_h3")
 
BooleanOptionKey const h3_filter ("antibody:h3_filter")
 
RealOptionKey const h3_filter_tolerance ("antibody:h3_filter_tolerance")
 
BooleanOptionKey const cter_insert ("antibody:cter_insert")
 
BooleanOptionKey const flank_residue_min ("antibody:flank_residue_min")
 
BooleanOptionKey const sc_min ("antibody:sc_min")
 
BooleanOptionKey const rt_min ("antibody:rt_min")
 
BooleanOptionKey const bad_nter ("antibody:bad_nter")
 
BooleanOptionKey const extend_h3_before_modeling ("antibody:extend_h3_before_modeling")
 
BooleanOptionKey const idealize_h3_stems_before_modeling ("antibody:idealize_h3_stems_before_modeling")
 
StringOptionKey const remodel ("antibody:remodel")
 
StringOptionKey const refine ("antibody:refine")
 
StringOptionKey const centroid_refine ("antibody:centroid_refine")
 
BooleanOptionKey const constrain_cter ("antibody:constrain_cter")
 
BooleanOptionKey const constrain_vlvh_qq ("antibody:constrain_vlvh_qq")
 
BooleanOptionKey const camelid ("antibody:camelid")
 
BooleanOptionKey const camelid_constraints ("antibody:camelid_constraints")
 

Variables

BooleanOptionKey const antibody
 
StringOptionKey const numbering_scheme
 
StringOptionKey const cdr_definition
 
BooleanOptionKey const check_cdr_chainbreaks
 
BooleanOptionKey const check_cdr_pep_bond_geom
 
BooleanOptionKey const graft_l1
 
BooleanOptionKey const graft_l2
 
BooleanOptionKey const graft_l3
 
BooleanOptionKey const graft_h1
 
BooleanOptionKey const graft_h2
 
BooleanOptionKey const graft_h3
 
BooleanOptionKey const h3_no_stem_graft
 
BooleanOptionKey const packonly_after_graft
 
BooleanOptionKey const stem_optimize
 
IntegerOptionKey const stem_optimize_size
 
StringOptionKey const preprocessing_script_version
 
BooleanOptionKey const model_h3
 
BooleanOptionKey const snugfit
 
BooleanOptionKey const refine_h3
 
BooleanOptionKey const h3_filter
 
RealOptionKey const h3_filter_tolerance
 
BooleanOptionKey const cter_insert
 
BooleanOptionKey const flank_residue_min
 
BooleanOptionKey const sc_min
 
BooleanOptionKey const rt_min
 
BooleanOptionKey const bad_nter
 
BooleanOptionKey const extend_h3_before_modeling
 
BooleanOptionKey const idealize_h3_stems_before_modeling
 
StringOptionKey const remodel
 
StringOptionKey const refine
 
StringOptionKey const centroid_refine
 
BooleanOptionKey const constrain_cter
 
BooleanOptionKey const constrain_vlvh_qq
 
BooleanOptionKey const camelid
 
BooleanOptionKey const camelid_constraints
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::antibody::antibody ( "antibody"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::bad_nter ( "antibody:bad_nter"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::camelid ( "antibody:camelid"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::camelid_constraints ( "antibody:camelid_constraints"  )
StringOptionKey const basic::options::OptionKeys::antibody::cdr_definition ( "antibody:cdr_definition"  )
StringOptionKey const basic::options::OptionKeys::antibody::centroid_refine ( "antibody:centroid_refine"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_chainbreaks ( "antibody:check_cdr_chainbreaks"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_pep_bond_geom ( "antibody:check_cdr_pep_bond_geom"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_cter ( "antibody:constrain_cter"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_vlvh_qq ( "antibody:constrain_vlvh_qq"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::cter_insert ( "antibody:cter_insert"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::extend_h3_before_modeling ( "antibody:extend_h3_before_modeling"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::flank_residue_min ( "antibody:flank_residue_min"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h1 ( "antibody:graft_h1"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h2 ( "antibody:graft_h2"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h3 ( "antibody:graft_h3"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l1 ( "antibody:graft_l1"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l2 ( "antibody:graft_l2"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l3 ( "antibody:graft_l3"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_filter ( "antibody:h3_filter"  )
RealOptionKey const basic::options::OptionKeys::antibody::h3_filter_tolerance ( "antibody:h3_filter_tolerance"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::h3_no_stem_graft ( "antibody:h3_no_stem_graft"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::idealize_h3_stems_before_modeling ( "antibody:idealize_h3_stems_before_modeling"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::model_h3 ( "antibody:model_h3"  )
StringOptionKey const basic::options::OptionKeys::antibody::numbering_scheme ( "antibody:numbering_scheme"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::packonly_after_graft ( "antibody:packonly_after_graft"  )
StringOptionKey const basic::options::OptionKeys::antibody::preprocessing_script_version ( "antibody:preprocessing_script_version"  )
StringOptionKey const basic::options::OptionKeys::antibody::refine ( "antibody:refine"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::refine_h3 ( "antibody:refine_h3"  )
StringOptionKey const basic::options::OptionKeys::antibody::remodel ( "antibody:remodel"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::rt_min ( "antibody:rt_min"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::sc_min ( "antibody:sc_min"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::snugfit ( "antibody:snugfit"  )
BooleanOptionKey const basic::options::OptionKeys::antibody::stem_optimize ( "antibody:stem_optimize"  )
IntegerOptionKey const basic::options::OptionKeys::antibody::stem_optimize_size ( "antibody:stem_optimize_size"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::antibody::antibody("antibody")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::bad_nter("antibody:bad_nter")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::camelid("antibody:camelid")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::camelid_constraints("antibody:camelid_constraints")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::cdr_definition("antibody:cdr_definition")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::centroid_refine("antibody:centroid_refine")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_chainbreaks("antibody:check_cdr_chainbreaks")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::check_cdr_pep_bond_geom("antibody:check_cdr_pep_bond_geom")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_cter("antibody:constrain_cter")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::constrain_vlvh_qq("antibody:constrain_vlvh_qq")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::cter_insert("antibody:cter_insert")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::extend_h3_before_modeling("antibody:extend_h3_before_modeling")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::flank_residue_min("antibody:flank_residue_min")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h1("antibody:graft_h1")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h2("antibody:graft_h2")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_h3("antibody:graft_h3")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l1("antibody:graft_l1")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l2("antibody:graft_l2")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::graft_l3("antibody:graft_l3")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_filter("antibody:h3_filter")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::antibody::h3_filter_tolerance("antibody:h3_filter_tolerance")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::h3_no_stem_graft("antibody:h3_no_stem_graft")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::idealize_h3_stems_before_modeling("antibody:idealize_h3_stems_before_modeling")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::model_h3("antibody:model_h3")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::numbering_scheme("antibody:numbering_scheme")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::packonly_after_graft("antibody:packonly_after_graft")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::preprocessing_script_version("antibody:preprocessing_script_version")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::refine("antibody:refine")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::refine_h3("antibody:refine_h3")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::antibody::remodel("antibody:remodel")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::rt_min("antibody:rt_min")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::sc_min("antibody:sc_min")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::snugfit("antibody:snugfit")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::antibody::stem_optimize("antibody:stem_optimize")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::antibody::stem_optimize_size("antibody:stem_optimize_size")

Referenced by add_rosetta_options_1().