Rosetta Utilities  2014.35
Functions
antibody::design Namespace Reference

Functions

BooleanOptionKey const design ("antibody:design")
 
StringOptionKey const instructions ("antibody:design:instructions")
 
StringOptionKey const antibody_database ("antibody:design:antibody_database")
 
StringVectorOptionKey const design_cdrs ("antibody:design:design_cdrs")
 
BooleanOptionKey const do_graft_design ("antibody:design:do_graft_design")
 
BooleanOptionKey const do_post_graft_design_modeling ("antibody:design:do_post_graft_design_modeling")
 
BooleanOptionKey const do_sequence_design ("antibody:design:do_sequence_design")
 
BooleanOptionKey const do_post_design_modeling ("antibody:design:do_post_design_modeling")
 
IntegerOptionKey const graft_rounds ("antibody:design:graft_rounds")
 
IntegerOptionKey const top_graft_designs ("antibody:design:top_graft_designs")
 
BooleanOptionKey const initial_perturb ("antibody:design:initial_perturb")
 
BooleanOptionKey const use_deterministic ("antibody:design:use_deterministic")
 
BooleanOptionKey const dump_post_graft_designs ("antibody:design:dump_post_graft_designs")
 
RealOptionKey const interface_dis ("antibody:design:interface_dis")
 
RealOptionKey const neighbor_dis ("antibody:design:neighbor_dis")
 
BooleanOptionKey const dock_post_graft ("antibody:design:dock_post_graft")
 
BooleanOptionKey const pack_post_graft ("antibody:design:pack_post_graft")
 
BooleanOptionKey const rb_min_post_graft ("antibody:design:rb_min_post_graft")
 
IntegerOptionKey const dock_rounds ("antibody:design:dock_rounds")
 
StringOptionKey const ab_dock_chains ("antibody:design:ab_dock_chains")
 
StringOptionKey const design_method ("antibody:design:design_method")
 
IntegerOptionKey const design_rounds ("antibody:design:design_rounds")
 
StringOptionKey const design_scorefxn ("antibody:design:design_scorefxn")
 
BooleanOptionKey const benchmark_basic_design ("antibody:design:benchmark_basic_design")
 
IntegerOptionKey const stats_cutoff ("antibody:design:stats_cutoff")
 
IntegerOptionKey const sample_zero_probs_at ("antibody:design:sample_zero_probs_at")
 
BooleanOptionKey const conservative_h3_design ("antibody:design:conservative_h3_design")
 
BooleanOptionKey const turn_conservation ("antibody:design:turn_conservation")
 
BooleanOptionKey const extend_native_cdrs ("antibody:design:extend_native_cdrs")
 

Function Documentation

StringOptionKey const antibody::design::ab_dock_chains ( "antibody:design:ab_dock_chains"  )
StringOptionKey const antibody::design::antibody_database ( "antibody:design:antibody_database"  )
BooleanOptionKey const antibody::design::benchmark_basic_design ( "antibody:design:benchmark_basic_design"  )
BooleanOptionKey const antibody::design::conservative_h3_design ( "antibody:design:conservative_h3_design"  )
BooleanOptionKey const antibody::design::design ( "antibody:design"  )
StringVectorOptionKey const antibody::design::design_cdrs ( "antibody:design:design_cdrs"  )
StringOptionKey const antibody::design::design_method ( "antibody:design:design_method"  )
IntegerOptionKey const antibody::design::design_rounds ( "antibody:design:design_rounds"  )
StringOptionKey const antibody::design::design_scorefxn ( "antibody:design:design_scorefxn"  )
BooleanOptionKey const antibody::design::do_graft_design ( "antibody:design:do_graft_design"  )
BooleanOptionKey const antibody::design::do_post_design_modeling ( "antibody:design:do_post_design_modeling"  )
BooleanOptionKey const antibody::design::do_post_graft_design_modeling ( "antibody:design:do_post_graft_design_modeling"  )
BooleanOptionKey const antibody::design::do_sequence_design ( "antibody:design:do_sequence_design"  )
BooleanOptionKey const antibody::design::dock_post_graft ( "antibody:design:dock_post_graft"  )
IntegerOptionKey const antibody::design::dock_rounds ( "antibody:design:dock_rounds"  )
BooleanOptionKey const antibody::design::dump_post_graft_designs ( "antibody:design:dump_post_graft_designs"  )
BooleanOptionKey const antibody::design::extend_native_cdrs ( "antibody:design:extend_native_cdrs"  )
IntegerOptionKey const antibody::design::graft_rounds ( "antibody:design:graft_rounds"  )
BooleanOptionKey const antibody::design::initial_perturb ( "antibody:design:initial_perturb"  )
StringOptionKey const antibody::design::instructions ( "antibody:design:instructions"  )
RealOptionKey const antibody::design::interface_dis ( "antibody:design:interface_dis"  )
RealOptionKey const antibody::design::neighbor_dis ( "antibody:design:neighbor_dis"  )
BooleanOptionKey const antibody::design::pack_post_graft ( "antibody:design:pack_post_graft"  )
BooleanOptionKey const antibody::design::rb_min_post_graft ( "antibody:design:rb_min_post_graft"  )
IntegerOptionKey const antibody::design::sample_zero_probs_at ( "antibody:design:sample_zero_probs_at"  )
IntegerOptionKey const antibody::design::stats_cutoff ( "antibody:design:stats_cutoff"  )
IntegerOptionKey const antibody::design::top_graft_designs ( "antibody:design:top_graft_designs"  )
BooleanOptionKey const antibody::design::turn_conservation ( "antibody:design:turn_conservation"  )
BooleanOptionKey const antibody::design::use_deterministic ( "antibody:design:use_deterministic"  )