Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::edensity Namespace Reference

Functions

BooleanOptionKey const edensity ("edensity")
 
BooleanOptionKey const debug ("edensity:debug")
 
StringOptionKey const mapfile ("edensity:mapfile")
 
RealOptionKey const mapreso ("edensity:mapreso")
 
RealOptionKey const grid_spacing ("edensity:grid_spacing")
 
RealOptionKey const centroid_density_mass ("edensity:centroid_density_mass")
 
IntegerOptionKey const sliding_window ("edensity:sliding_window")
 
BooleanOptionKey const cryoem_scatterers ("edensity:cryoem_scatterers")
 
RealOptionKey const force_apix ("edensity:force_apix")
 
RealOptionKey const fastdens_wt ("edensity:fastdens_wt")
 
RealVectorOptionKey const fastdens_params ("edensity:fastdens_params")
 
BooleanOptionKey const legacy_fastdens_score ("edensity:legacy_fastdens_score")
 
RealOptionKey const sliding_window_wt ("edensity:sliding_window_wt")
 
BooleanOptionKey const score_sliding_window_context ("edensity:score_sliding_window_context")
 
RealOptionKey const whole_structure_ca_wt ("edensity:whole_structure_ca_wt")
 
RealOptionKey const whole_structure_allatom_wt ("edensity:whole_structure_allatom_wt")
 
BooleanOptionKey const debug_derivatives ("edensity:debug_derivatives")
 
StringOptionKey const realign ("edensity:realign")
 
StringOptionKey const membrane_axis ("edensity:membrane_axis")
 
RealOptionKey const atom_mask ("edensity:atom_mask")
 
RealOptionKey const atom_mask_min ("edensity:atom_mask_min")
 
RealOptionKey const ca_mask ("edensity:ca_mask")
 
BooleanOptionKey const score_symm_complex ("edensity:score_symm_complex")
 
RealOptionKey const sc_scaling ("edensity:sc_scaling")
 
IntegerOptionKey const n_kbins ("edensity:n_kbins")
 
BooleanOptionKey const unmask_bb ("edensity:unmask_bb")
 

Variables

BooleanOptionKey const edensity
 
BooleanOptionKey const debug
 
StringOptionKey const mapfile
 
RealOptionKey const mapreso
 
RealOptionKey const grid_spacing
 
RealOptionKey const centroid_density_mass
 
IntegerOptionKey const sliding_window
 
BooleanOptionKey const cryoem_scatterers
 
RealOptionKey const force_apix
 
RealOptionKey const fastdens_wt
 
RealVectorOptionKey const fastdens_params
 
BooleanOptionKey const legacy_fastdens_score
 
RealOptionKey const sliding_window_wt
 
BooleanOptionKey const score_sliding_window_context
 
RealOptionKey const whole_structure_ca_wt
 
RealOptionKey const whole_structure_allatom_wt
 
BooleanOptionKey const debug_derivatives
 
StringOptionKey const realign
 
StringOptionKey const membrane_axis
 
RealOptionKey const atom_mask
 
RealOptionKey const atom_mask_min
 
RealOptionKey const ca_mask
 
BooleanOptionKey const score_symm_complex
 
RealOptionKey const sc_scaling
 
IntegerOptionKey const n_kbins
 
BooleanOptionKey const unmask_bb
 

Function Documentation

RealOptionKey const basic::options::OptionKeys::edensity::atom_mask ( "edensity:atom_mask"  )
RealOptionKey const basic::options::OptionKeys::edensity::atom_mask_min ( "edensity:atom_mask_min"  )
RealOptionKey const basic::options::OptionKeys::edensity::ca_mask ( "edensity:ca_mask"  )
RealOptionKey const basic::options::OptionKeys::edensity::centroid_density_mass ( "edensity:centroid_density_mass"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::cryoem_scatterers ( "edensity:cryoem_scatterers"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::debug ( "edensity:debug"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::debug_derivatives ( "edensity:debug_derivatives"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::edensity ( "edensity"  )
RealVectorOptionKey const basic::options::OptionKeys::edensity::fastdens_params ( "edensity:fastdens_params"  )
RealOptionKey const basic::options::OptionKeys::edensity::fastdens_wt ( "edensity:fastdens_wt"  )
RealOptionKey const basic::options::OptionKeys::edensity::force_apix ( "edensity:force_apix"  )
RealOptionKey const basic::options::OptionKeys::edensity::grid_spacing ( "edensity:grid_spacing"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::legacy_fastdens_score ( "edensity:legacy_fastdens_score"  )
StringOptionKey const basic::options::OptionKeys::edensity::mapfile ( "edensity:mapfile"  )
RealOptionKey const basic::options::OptionKeys::edensity::mapreso ( "edensity:mapreso"  )
StringOptionKey const basic::options::OptionKeys::edensity::membrane_axis ( "edensity:membrane_axis"  )
IntegerOptionKey const basic::options::OptionKeys::edensity::n_kbins ( "edensity:n_kbins"  )
StringOptionKey const basic::options::OptionKeys::edensity::realign ( "edensity:realign"  )
RealOptionKey const basic::options::OptionKeys::edensity::sc_scaling ( "edensity:sc_scaling"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::score_sliding_window_context ( "edensity:score_sliding_window_context"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::score_symm_complex ( "edensity:score_symm_complex"  )
IntegerOptionKey const basic::options::OptionKeys::edensity::sliding_window ( "edensity:sliding_window"  )
RealOptionKey const basic::options::OptionKeys::edensity::sliding_window_wt ( "edensity:sliding_window_wt"  )
BooleanOptionKey const basic::options::OptionKeys::edensity::unmask_bb ( "edensity:unmask_bb"  )
RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_allatom_wt ( "edensity:whole_structure_allatom_wt"  )
RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_ca_wt ( "edensity:whole_structure_ca_wt"  )

Variable Documentation

RealOptionKey const basic::options::OptionKeys::edensity::atom_mask("edensity:atom_mask")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::atom_mask_min("edensity:atom_mask_min")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::ca_mask("edensity:ca_mask")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::centroid_density_mass("edensity:centroid_density_mass")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::cryoem_scatterers("edensity:cryoem_scatterers")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::debug("edensity:debug")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::debug_derivatives("edensity:debug_derivatives")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::edensity("edensity")

Referenced by add_rosetta_options_2().

RealVectorOptionKey const basic::options::OptionKeys::edensity::fastdens_params("edensity:fastdens_params")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::fastdens_wt("edensity:fastdens_wt")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::force_apix("edensity:force_apix")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::grid_spacing("edensity:grid_spacing")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::legacy_fastdens_score("edensity:legacy_fastdens_score")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::edensity::mapfile("edensity:mapfile")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::mapreso("edensity:mapreso")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::edensity::membrane_axis("edensity:membrane_axis")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::edensity::n_kbins("edensity:n_kbins")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::edensity::realign("edensity:realign")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::sc_scaling("edensity:sc_scaling")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::score_sliding_window_context("edensity:score_sliding_window_context")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::score_symm_complex("edensity:score_symm_complex")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::edensity::sliding_window("edensity:sliding_window")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::sliding_window_wt("edensity:sliding_window_wt")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::edensity::unmask_bb("edensity:unmask_bb")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_allatom_wt("edensity:whole_structure_allatom_wt")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_ca_wt("edensity:whole_structure_ca_wt")

Referenced by add_rosetta_options_2().