Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::match Namespace Reference

Functions

BooleanOptionKey const match ("match")
 
StringOptionKey const lig_name ("match:lig_name")
 
RealOptionKey const bump_tolerance ("match:bump_tolerance")
 
FileOptionKey const active_site_definition_by_residue ("match:active_site_definition_by_residue")
 
FileOptionKey const active_site_definition_by_gridlig ("match:active_site_definition_by_gridlig")
 
FileOptionKey const required_active_site_atom_names ("match:required_active_site_atom_names")
 
FileOptionKey const grid_boundary ("match:grid_boundary")
 
FileOptionKey const geometric_constraint_file ("match:geometric_constraint_file")
 
FileOptionKey const scaffold_active_site_residues ("match:scaffold_active_site_residues")
 
FileOptionKey const scaffold_active_site_residues_for_geomcsts ("match:scaffold_active_site_residues_for_geomcsts")
 
RealOptionKey const euclid_bin_size ("match:euclid_bin_size")
 
RealOptionKey const euler_bin_size ("match:euler_bin_size")
 
BooleanOptionKey const consolidate_matches ("match:consolidate_matches")
 
IntegerOptionKey const output_matches_per_group ("match:output_matches_per_group")
 
StringVectorOptionKey const orientation_atoms ("match:orientation_atoms")
 
StringOptionKey const output_format ("match:output_format")
 
StringOptionKey const match_grouper ("match:match_grouper")
 
RealOptionKey const grouper_downstream_rmsd ("match:grouper_downstream_rmsd")
 
BooleanOptionKey const output_matchres_only ("match:output_matchres_only")
 
IntegerVectorOptionKey const geom_csts_downstream_output ("match:geom_csts_downstream_output")
 
BooleanOptionKey const filter_colliding_upstream_residues ("match:filter_colliding_upstream_residues")
 
RealOptionKey const upstream_residue_collision_tolerance ("match:upstream_residue_collision_tolerance")
 
RealOptionKey const upstream_residue_collision_score_cutoff ("match:upstream_residue_collision_score_cutoff")
 
RealOptionKey const upstream_residue_collision_Wfa_atr ("match:upstream_residue_collision_Wfa_atr")
 
RealOptionKey const upstream_residue_collision_Wfa_rep ("match:upstream_residue_collision_Wfa_rep")
 
RealOptionKey const upstream_residue_collision_Wfa_sol ("match:upstream_residue_collision_Wfa_sol")
 
BooleanOptionKey const filter_upstream_downstream_collisions ("match:filter_upstream_downstream_collisions")
 
RealOptionKey const updown_collision_tolerance ("match:updown_collision_tolerance")
 
RealOptionKey const updown_residue_collision_score_cutoff ("match:updown_residue_collision_score_cutoff")
 
RealOptionKey const updown_residue_collision_Wfa_atr ("match:updown_residue_collision_Wfa_atr")
 
RealOptionKey const updown_residue_collision_Wfa_rep ("match:updown_residue_collision_Wfa_rep")
 
RealOptionKey const updown_residue_collision_Wfa_sol ("match:updown_residue_collision_Wfa_sol")
 
BooleanOptionKey const define_match_by_single_downstream_positioning ("match:define_match_by_single_downstream_positioning")
 
IntegerOptionKey const ligand_rotamer_index ("match:ligand_rotamer_index")
 
BooleanOptionKey const enumerate_ligand_rotamers ("match:enumerate_ligand_rotamers")
 
BooleanOptionKey const only_enumerate_non_match_redundant_ligand_rotamers ("match:only_enumerate_non_match_redundant_ligand_rotamers")
 
BooleanOptionKey const dynamic_grid_refinement ("match:dynamic_grid_refinement")
 
BooleanOptionKey const build_round1_hits_twice ("match:build_round1_hits_twice")
 

Variables

BooleanOptionKey const match
 
StringOptionKey const lig_name
 
RealOptionKey const bump_tolerance
 
FileOptionKey const active_site_definition_by_residue
 
FileOptionKey const active_site_definition_by_gridlig
 
FileOptionKey const required_active_site_atom_names
 
FileOptionKey const grid_boundary
 
FileOptionKey const geometric_constraint_file
 
FileOptionKey const scaffold_active_site_residues
 
FileOptionKey const scaffold_active_site_residues_for_geomcsts
 
RealOptionKey const euclid_bin_size
 
RealOptionKey const euler_bin_size
 
BooleanOptionKey const consolidate_matches
 
IntegerOptionKey const output_matches_per_group
 
StringVectorOptionKey const orientation_atoms
 
StringOptionKey const output_format
 
StringOptionKey const match_grouper
 
RealOptionKey const grouper_downstream_rmsd
 
BooleanOptionKey const output_matchres_only
 
IntegerVectorOptionKey const geom_csts_downstream_output
 
BooleanOptionKey const filter_colliding_upstream_residues
 
RealOptionKey const upstream_residue_collision_tolerance
 
RealOptionKey const upstream_residue_collision_score_cutoff
 
RealOptionKey const upstream_residue_collision_Wfa_atr
 
RealOptionKey const upstream_residue_collision_Wfa_rep
 
RealOptionKey const upstream_residue_collision_Wfa_sol
 
BooleanOptionKey const filter_upstream_downstream_collisions
 
RealOptionKey const updown_collision_tolerance
 
RealOptionKey const updown_residue_collision_score_cutoff
 
RealOptionKey const updown_residue_collision_Wfa_atr
 
RealOptionKey const updown_residue_collision_Wfa_rep
 
RealOptionKey const updown_residue_collision_Wfa_sol
 
BooleanOptionKey const define_match_by_single_downstream_positioning
 
IntegerOptionKey const ligand_rotamer_index
 
BooleanOptionKey const enumerate_ligand_rotamers
 
BooleanOptionKey const only_enumerate_non_match_redundant_ligand_rotamers
 
BooleanOptionKey const dynamic_grid_refinement
 
BooleanOptionKey const build_round1_hits_twice
 

Function Documentation

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_gridlig ( "match:active_site_definition_by_gridlig"  )
FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_residue ( "match:active_site_definition_by_residue"  )
BooleanOptionKey const basic::options::OptionKeys::match::build_round1_hits_twice ( "match:build_round1_hits_twice"  )
RealOptionKey const basic::options::OptionKeys::match::bump_tolerance ( "match:bump_tolerance"  )
BooleanOptionKey const basic::options::OptionKeys::match::consolidate_matches ( "match:consolidate_matches"  )
BooleanOptionKey const basic::options::OptionKeys::match::define_match_by_single_downstream_positioning ( "match:define_match_by_single_downstream_positioning"  )
BooleanOptionKey const basic::options::OptionKeys::match::dynamic_grid_refinement ( "match:dynamic_grid_refinement"  )
BooleanOptionKey const basic::options::OptionKeys::match::enumerate_ligand_rotamers ( "match:enumerate_ligand_rotamers"  )
RealOptionKey const basic::options::OptionKeys::match::euclid_bin_size ( "match:euclid_bin_size"  )
RealOptionKey const basic::options::OptionKeys::match::euler_bin_size ( "match:euler_bin_size"  )
BooleanOptionKey const basic::options::OptionKeys::match::filter_colliding_upstream_residues ( "match:filter_colliding_upstream_residues"  )
BooleanOptionKey const basic::options::OptionKeys::match::filter_upstream_downstream_collisions ( "match:filter_upstream_downstream_collisions"  )
IntegerVectorOptionKey const basic::options::OptionKeys::match::geom_csts_downstream_output ( "match:geom_csts_downstream_output"  )
FileOptionKey const basic::options::OptionKeys::match::geometric_constraint_file ( "match:geometric_constraint_file"  )
FileOptionKey const basic::options::OptionKeys::match::grid_boundary ( "match:grid_boundary"  )
RealOptionKey const basic::options::OptionKeys::match::grouper_downstream_rmsd ( "match:grouper_downstream_rmsd"  )
StringOptionKey const basic::options::OptionKeys::match::lig_name ( "match:lig_name"  )
IntegerOptionKey const basic::options::OptionKeys::match::ligand_rotamer_index ( "match:ligand_rotamer_index"  )
BooleanOptionKey const basic::options::OptionKeys::match::match ( "match"  )
StringOptionKey const basic::options::OptionKeys::match::match_grouper ( "match:match_grouper"  )
BooleanOptionKey const basic::options::OptionKeys::match::only_enumerate_non_match_redundant_ligand_rotamers ( "match:only_enumerate_non_match_redundant_ligand_rotamers"  )
StringVectorOptionKey const basic::options::OptionKeys::match::orientation_atoms ( "match:orientation_atoms"  )
StringOptionKey const basic::options::OptionKeys::match::output_format ( "match:output_format"  )
IntegerOptionKey const basic::options::OptionKeys::match::output_matches_per_group ( "match:output_matches_per_group"  )
BooleanOptionKey const basic::options::OptionKeys::match::output_matchres_only ( "match:output_matchres_only"  )
FileOptionKey const basic::options::OptionKeys::match::required_active_site_atom_names ( "match:required_active_site_atom_names"  )
FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues ( "match:scaffold_active_site_residues"  )
FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues_for_geomcsts ( "match:scaffold_active_site_residues_for_geomcsts"  )
RealOptionKey const basic::options::OptionKeys::match::updown_collision_tolerance ( "match:updown_collision_tolerance"  )
RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_score_cutoff ( "match:updown_residue_collision_score_cutoff"  )
RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_atr ( "match:updown_residue_collision_Wfa_atr"  )
RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_rep ( "match:updown_residue_collision_Wfa_rep"  )
RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_sol ( "match:updown_residue_collision_Wfa_sol"  )
RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_score_cutoff ( "match:upstream_residue_collision_score_cutoff"  )
RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_tolerance ( "match:upstream_residue_collision_tolerance"  )
RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_atr ( "match:upstream_residue_collision_Wfa_atr"  )
RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_rep ( "match:upstream_residue_collision_Wfa_rep"  )
RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_sol ( "match:upstream_residue_collision_Wfa_sol"  )

Variable Documentation

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_gridlig("match:active_site_definition_by_gridlig")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_residue("match:active_site_definition_by_residue")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::build_round1_hits_twice("match:build_round1_hits_twice")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::bump_tolerance("match:bump_tolerance")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::consolidate_matches("match:consolidate_matches")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::define_match_by_single_downstream_positioning("match:define_match_by_single_downstream_positioning")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::dynamic_grid_refinement("match:dynamic_grid_refinement")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::enumerate_ligand_rotamers("match:enumerate_ligand_rotamers")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::euclid_bin_size("match:euclid_bin_size")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::euler_bin_size("match:euler_bin_size")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::filter_colliding_upstream_residues("match:filter_colliding_upstream_residues")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::filter_upstream_downstream_collisions("match:filter_upstream_downstream_collisions")

Referenced by add_rosetta_options_2().

IntegerVectorOptionKey const basic::options::OptionKeys::match::geom_csts_downstream_output("match:geom_csts_downstream_output")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::geometric_constraint_file("match:geometric_constraint_file")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::grid_boundary("match:grid_boundary")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::grouper_downstream_rmsd("match:grouper_downstream_rmsd")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::match::lig_name("match:lig_name")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::match::ligand_rotamer_index("match:ligand_rotamer_index")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::match("match")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::match::match_grouper("match:match_grouper")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::only_enumerate_non_match_redundant_ligand_rotamers("match:only_enumerate_non_match_redundant_ligand_rotamers")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::match::orientation_atoms("match:orientation_atoms")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::match::output_format("match:output_format")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::match::output_matches_per_group("match:output_matches_per_group")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::match::output_matchres_only("match:output_matchres_only")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::required_active_site_atom_names("match:required_active_site_atom_names")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues("match:scaffold_active_site_residues")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues_for_geomcsts("match:scaffold_active_site_residues_for_geomcsts")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::updown_collision_tolerance("match:updown_collision_tolerance")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_score_cutoff("match:updown_residue_collision_score_cutoff")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_atr("match:updown_residue_collision_Wfa_atr")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_rep("match:updown_residue_collision_Wfa_rep")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_sol("match:updown_residue_collision_Wfa_sol")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_score_cutoff("match:upstream_residue_collision_score_cutoff")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_tolerance("match:upstream_residue_collision_tolerance")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_atr("match:upstream_residue_collision_Wfa_atr")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_rep("match:upstream_residue_collision_Wfa_rep")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_sol("match:upstream_residue_collision_Wfa_sol")

Referenced by add_rosetta_options_2().