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Rosetta Utilities
2014.35
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Rosetta Utilities
2014.35
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Functions | |
| BooleanOptionKey const | design ("antibody:design") |
| StringOptionKey const | instructions ("antibody:design:instructions") |
| StringOptionKey const | antibody_database ("antibody:design:antibody_database") |
| StringVectorOptionKey const | design_cdrs ("antibody:design:design_cdrs") |
| BooleanOptionKey const | do_graft_design ("antibody:design:do_graft_design") |
| BooleanOptionKey const | do_post_graft_design_modeling ("antibody:design:do_post_graft_design_modeling") |
| BooleanOptionKey const | do_sequence_design ("antibody:design:do_sequence_design") |
| BooleanOptionKey const | do_post_design_modeling ("antibody:design:do_post_design_modeling") |
| IntegerOptionKey const | graft_rounds ("antibody:design:graft_rounds") |
| IntegerOptionKey const | top_graft_designs ("antibody:design:top_graft_designs") |
| BooleanOptionKey const | initial_perturb ("antibody:design:initial_perturb") |
| BooleanOptionKey const | use_deterministic ("antibody:design:use_deterministic") |
| BooleanOptionKey const | dump_post_graft_designs ("antibody:design:dump_post_graft_designs") |
| RealOptionKey const | interface_dis ("antibody:design:interface_dis") |
| RealOptionKey const | neighbor_dis ("antibody:design:neighbor_dis") |
| BooleanOptionKey const | dock_post_graft ("antibody:design:dock_post_graft") |
| BooleanOptionKey const | pack_post_graft ("antibody:design:pack_post_graft") |
| BooleanOptionKey const | rb_min_post_graft ("antibody:design:rb_min_post_graft") |
| IntegerOptionKey const | dock_rounds ("antibody:design:dock_rounds") |
| StringOptionKey const | ab_dock_chains ("antibody:design:ab_dock_chains") |
| StringOptionKey const | design_method ("antibody:design:design_method") |
| IntegerOptionKey const | design_rounds ("antibody:design:design_rounds") |
| StringOptionKey const | design_scorefxn ("antibody:design:design_scorefxn") |
| BooleanOptionKey const | benchmark_basic_design ("antibody:design:benchmark_basic_design") |
| IntegerOptionKey const | stats_cutoff ("antibody:design:stats_cutoff") |
| IntegerOptionKey const | sample_zero_probs_at ("antibody:design:sample_zero_probs_at") |
| BooleanOptionKey const | conservative_h3_design ("antibody:design:conservative_h3_design") |
| BooleanOptionKey const | turn_conservation ("antibody:design:turn_conservation") |
| BooleanOptionKey const | extend_native_cdrs ("antibody:design:extend_native_cdrs") |
| StringOptionKey const basic::options::OptionKeys::antibody::design::ab_dock_chains | ( | "antibody:design:ab_dock_chains" | ) |
| StringOptionKey const basic::options::OptionKeys::antibody::design::antibody_database | ( | "antibody:design:antibody_database" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::benchmark_basic_design | ( | "antibody:design:benchmark_basic_design" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::conservative_h3_design | ( | "antibody:design:conservative_h3_design" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::design | ( | "antibody:design" | ) |
| StringVectorOptionKey const basic::options::OptionKeys::antibody::design::design_cdrs | ( | "antibody:design:design_cdrs" | ) |
| StringOptionKey const basic::options::OptionKeys::antibody::design::design_method | ( | "antibody:design:design_method" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::design_rounds | ( | "antibody:design:design_rounds" | ) |
| StringOptionKey const basic::options::OptionKeys::antibody::design::design_scorefxn | ( | "antibody:design:design_scorefxn" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_graft_design | ( | "antibody:design:do_graft_design" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_post_design_modeling | ( | "antibody:design:do_post_design_modeling" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_post_graft_design_modeling | ( | "antibody:design:do_post_graft_design_modeling" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_sequence_design | ( | "antibody:design:do_sequence_design" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::dock_post_graft | ( | "antibody:design:dock_post_graft" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::dock_rounds | ( | "antibody:design:dock_rounds" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::dump_post_graft_designs | ( | "antibody:design:dump_post_graft_designs" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::extend_native_cdrs | ( | "antibody:design:extend_native_cdrs" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::graft_rounds | ( | "antibody:design:graft_rounds" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::initial_perturb | ( | "antibody:design:initial_perturb" | ) |
| StringOptionKey const basic::options::OptionKeys::antibody::design::instructions | ( | "antibody:design:instructions" | ) |
| RealOptionKey const basic::options::OptionKeys::antibody::design::interface_dis | ( | "antibody:design:interface_dis" | ) |
| RealOptionKey const basic::options::OptionKeys::antibody::design::neighbor_dis | ( | "antibody:design:neighbor_dis" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::pack_post_graft | ( | "antibody:design:pack_post_graft" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::rb_min_post_graft | ( | "antibody:design:rb_min_post_graft" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::sample_zero_probs_at | ( | "antibody:design:sample_zero_probs_at" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::stats_cutoff | ( | "antibody:design:stats_cutoff" | ) |
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::top_graft_designs | ( | "antibody:design:top_graft_designs" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::turn_conservation | ( | "antibody:design:turn_conservation" | ) |
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_deterministic | ( | "antibody:design:use_deterministic" | ) |
| StringOptionKey const basic::options::OptionKeys::antibody::design::ab_dock_chains("antibody:design:ab_dock_chains") |
Referenced by add_rosetta_options_1().
| StringOptionKey const basic::options::OptionKeys::antibody::design::antibody_database("antibody:design:antibody_database") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::benchmark_basic_design("antibody:design:benchmark_basic_design") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::conservative_h3_design("antibody:design:conservative_h3_design") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::design("antibody:design") |
Referenced by add_rosetta_options_1().
| StringVectorOptionKey const basic::options::OptionKeys::antibody::design::design_cdrs("antibody:design:design_cdrs") |
Referenced by add_rosetta_options_1().
| StringOptionKey const basic::options::OptionKeys::antibody::design::design_method("antibody:design:design_method") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::design_rounds("antibody:design:design_rounds") |
Referenced by add_rosetta_options_1().
| StringOptionKey const basic::options::OptionKeys::antibody::design::design_scorefxn("antibody:design:design_scorefxn") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_graft_design("antibody:design:do_graft_design") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_post_design_modeling("antibody:design:do_post_design_modeling") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_post_graft_design_modeling("antibody:design:do_post_graft_design_modeling") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::do_sequence_design("antibody:design:do_sequence_design") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::dock_post_graft("antibody:design:dock_post_graft") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::dock_rounds("antibody:design:dock_rounds") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::dump_post_graft_designs("antibody:design:dump_post_graft_designs") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::extend_native_cdrs("antibody:design:extend_native_cdrs") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::graft_rounds("antibody:design:graft_rounds") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::initial_perturb("antibody:design:initial_perturb") |
Referenced by add_rosetta_options_1().
| StringOptionKey const basic::options::OptionKeys::antibody::design::instructions("antibody:design:instructions") |
Referenced by add_rosetta_options_1().
| RealOptionKey const basic::options::OptionKeys::antibody::design::interface_dis("antibody:design:interface_dis") |
Referenced by add_rosetta_options_1().
| RealOptionKey const basic::options::OptionKeys::antibody::design::neighbor_dis("antibody:design:neighbor_dis") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::pack_post_graft("antibody:design:pack_post_graft") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::rb_min_post_graft("antibody:design:rb_min_post_graft") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::sample_zero_probs_at("antibody:design:sample_zero_probs_at") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::stats_cutoff("antibody:design:stats_cutoff") |
Referenced by add_rosetta_options_1().
| IntegerOptionKey const basic::options::OptionKeys::antibody::design::top_graft_designs("antibody:design:top_graft_designs") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::turn_conservation("antibody:design:turn_conservation") |
Referenced by add_rosetta_options_1().
| BooleanOptionKey const basic::options::OptionKeys::antibody::design::use_deterministic("antibody:design:use_deterministic") |
Referenced by add_rosetta_options_1().
1.8.7