Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::lh Namespace Reference

Namespaces

 fragpdb
 
 symfragrm
 

Functions

BooleanOptionKey const lh ("lh")
 
IntegerVectorOptionKey const loopsizes ("lh:loopsizes")
 
IntegerOptionKey const num_partitions ("lh:num_partitions")
 
PathOptionKey const db_path ("lh:db_path")
 
BooleanOptionKey const exclude_homo ("lh:exclude_homo")
 
BooleanOptionKey const bss ("lh:bss")
 
StringOptionKey const refstruct ("lh:refstruct")
 
StringOptionKey const homo_file ("lh:homo_file")
 
RealVectorOptionKey const createdb_rms_cutoff ("lh:createdb_rms_cutoff")
 
RealOptionKey const min_bbrms ("lh:min_bbrms")
 
RealOptionKey const max_bbrms ("lh:max_bbrms")
 
RealOptionKey const min_rms ("lh:min_rms")
 
RealOptionKey const max_rms ("lh:max_rms")
 
BooleanOptionKey const filter_by_phipsi ("lh:filter_by_phipsi")
 
IntegerOptionKey const max_radius ("lh:max_radius")
 
IntegerOptionKey const max_struct ("lh:max_struct")
 
IntegerOptionKey const max_struct_per_radius ("lh:max_struct_per_radius")
 
RealOptionKey const grid_space_multiplier ("lh:grid_space_multiplier")
 
RealOptionKey const grid_angle_multiplier ("lh:grid_angle_multiplier")
 
IntegerOptionKey const skim_size ("lh:skim_size")
 
IntegerOptionKey const rounds ("lh:rounds")
 
StringOptionKey const jobname ("lh:jobname")
 
IntegerOptionKey const max_lib_size ("lh:max_lib_size")
 
IntegerOptionKey const max_emperor_lib_size ("lh:max_emperor_lib_size")
 
IntegerOptionKey const max_emperor_lib_round ("lh:max_emperor_lib_round")
 
IntegerOptionKey const library_expiry_time ("lh:library_expiry_time")
 
StringOptionKey const objective_function ("lh:objective_function")
 
IntegerOptionKey const expire_after_rounds ("lh:expire_after_rounds")
 
StringOptionKey const mpi_resume ("lh:mpi_resume")
 
StringOptionKey const mpi_feedback ("lh:mpi_feedback")
 
IntegerOptionKey const mpi_batch_relax_chunks ("lh:mpi_batch_relax_chunks")
 
IntegerOptionKey const mpi_batch_relax_absolute_max ("lh:mpi_batch_relax_absolute_max")
 
IntegerOptionKey const mpi_outbound_wu_buffer_size ("lh:mpi_outbound_wu_buffer_size")
 
IntegerOptionKey const mpi_loophash_split_size ("lh:mpi_loophash_split_size ")
 
RealOptionKey const mpi_metropolis_temp ("lh:mpi_metropolis_temp")
 
IntegerOptionKey const mpi_save_state_interval ("lh:mpi_save_state_interval")
 
BooleanOptionKey const mpi_master_save_score_only ("lh:mpi_master_save_score_only")
 
IntegerOptionKey const max_loophash_per_structure ("lh:max_loophash_per_structure")
 
RealOptionKey const rms_limit ("lh:rms_limit")
 
BooleanOptionKey const centroid_only ("lh:centroid_only")
 
BooleanOptionKey const write_centroid_structs ("lh:write_centroid_structs")
 
BooleanOptionKey const write_all_fa_structs ("lh:write_all_fa_structs")
 
BooleanOptionKey const sandbox ("lh:sandbox")
 
BooleanOptionKey const create_db ("lh:create_db")
 
FileOptionKey const sample_weight_file ("lh:sample_weight_file")
 
RealOptionKey const radius_size ("lh:radius_size")
 

Variables

BooleanOptionKey const lh
 
IntegerVectorOptionKey const loopsizes
 
IntegerOptionKey const num_partitions
 
PathOptionKey const db_path
 
BooleanOptionKey const exclude_homo
 
BooleanOptionKey const bss
 
StringOptionKey const refstruct
 
StringOptionKey const homo_file
 
RealVectorOptionKey const createdb_rms_cutoff
 
RealOptionKey const min_bbrms
 
RealOptionKey const max_bbrms
 
RealOptionKey const min_rms
 
RealOptionKey const max_rms
 
BooleanOptionKey const filter_by_phipsi
 
IntegerOptionKey const max_radius
 
IntegerOptionKey const max_struct
 
IntegerOptionKey const max_struct_per_radius
 
RealOptionKey const grid_space_multiplier
 
RealOptionKey const grid_angle_multiplier
 
IntegerOptionKey const skim_size
 
IntegerOptionKey const rounds
 
StringOptionKey const jobname
 
IntegerOptionKey const max_lib_size
 
IntegerOptionKey const max_emperor_lib_size
 
IntegerOptionKey const max_emperor_lib_round
 
IntegerOptionKey const library_expiry_time
 
StringOptionKey const objective_function
 
IntegerOptionKey const expire_after_rounds
 
StringOptionKey const mpi_resume
 
StringOptionKey const mpi_feedback
 
IntegerOptionKey const mpi_batch_relax_chunks
 
IntegerOptionKey const mpi_batch_relax_absolute_max
 
IntegerOptionKey const mpi_outbound_wu_buffer_size
 
IntegerOptionKey const mpi_loophash_split_size
 
RealOptionKey const mpi_metropolis_temp
 
IntegerOptionKey const mpi_save_state_interval
 
BooleanOptionKey const mpi_master_save_score_only
 
IntegerOptionKey const max_loophash_per_structure
 
RealOptionKey const rms_limit
 
BooleanOptionKey const centroid_only
 
BooleanOptionKey const write_centroid_structs
 
BooleanOptionKey const write_all_fa_structs
 
BooleanOptionKey const sandbox
 
BooleanOptionKey const create_db
 
FileOptionKey const sample_weight_file
 
RealOptionKey const radius_size
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::lh::bss ( "lh:bss"  )
BooleanOptionKey const basic::options::OptionKeys::lh::centroid_only ( "lh:centroid_only"  )
BooleanOptionKey const basic::options::OptionKeys::lh::create_db ( "lh:create_db"  )
RealVectorOptionKey const basic::options::OptionKeys::lh::createdb_rms_cutoff ( "lh:createdb_rms_cutoff"  )
PathOptionKey const basic::options::OptionKeys::lh::db_path ( "lh:db_path"  )
BooleanOptionKey const basic::options::OptionKeys::lh::exclude_homo ( "lh:exclude_homo"  )
IntegerOptionKey const basic::options::OptionKeys::lh::expire_after_rounds ( "lh:expire_after_rounds"  )
BooleanOptionKey const basic::options::OptionKeys::lh::filter_by_phipsi ( "lh:filter_by_phipsi"  )
RealOptionKey const basic::options::OptionKeys::lh::grid_angle_multiplier ( "lh:grid_angle_multiplier"  )
RealOptionKey const basic::options::OptionKeys::lh::grid_space_multiplier ( "lh:grid_space_multiplier"  )
StringOptionKey const basic::options::OptionKeys::lh::homo_file ( "lh:homo_file"  )
StringOptionKey const basic::options::OptionKeys::lh::jobname ( "lh:jobname"  )
BooleanOptionKey const basic::options::OptionKeys::lh::lh ( "lh"  )
IntegerOptionKey const basic::options::OptionKeys::lh::library_expiry_time ( "lh:library_expiry_time"  )
IntegerVectorOptionKey const basic::options::OptionKeys::lh::loopsizes ( "lh:loopsizes"  )
RealOptionKey const basic::options::OptionKeys::lh::max_bbrms ( "lh:max_bbrms"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_round ( "lh:max_emperor_lib_round"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_size ( "lh:max_emperor_lib_size"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_lib_size ( "lh:max_lib_size"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_loophash_per_structure ( "lh:max_loophash_per_structure"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_radius ( "lh:max_radius"  )
RealOptionKey const basic::options::OptionKeys::lh::max_rms ( "lh:max_rms"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_struct ( "lh:max_struct"  )
IntegerOptionKey const basic::options::OptionKeys::lh::max_struct_per_radius ( "lh:max_struct_per_radius"  )
RealOptionKey const basic::options::OptionKeys::lh::min_bbrms ( "lh:min_bbrms"  )
RealOptionKey const basic::options::OptionKeys::lh::min_rms ( "lh:min_rms"  )
IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_absolute_max ( "lh:mpi_batch_relax_absolute_max"  )
IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_chunks ( "lh:mpi_batch_relax_chunks"  )
StringOptionKey const basic::options::OptionKeys::lh::mpi_feedback ( "lh:mpi_feedback"  )
IntegerOptionKey const basic::options::OptionKeys::lh::mpi_loophash_split_size ( "lh:mpi_loophash_split_size "  )
BooleanOptionKey const basic::options::OptionKeys::lh::mpi_master_save_score_only ( "lh:mpi_master_save_score_only"  )
RealOptionKey const basic::options::OptionKeys::lh::mpi_metropolis_temp ( "lh:mpi_metropolis_temp"  )
IntegerOptionKey const basic::options::OptionKeys::lh::mpi_outbound_wu_buffer_size ( "lh:mpi_outbound_wu_buffer_size"  )
StringOptionKey const basic::options::OptionKeys::lh::mpi_resume ( "lh:mpi_resume"  )
IntegerOptionKey const basic::options::OptionKeys::lh::mpi_save_state_interval ( "lh:mpi_save_state_interval"  )
IntegerOptionKey const basic::options::OptionKeys::lh::num_partitions ( "lh:num_partitions"  )
StringOptionKey const basic::options::OptionKeys::lh::objective_function ( "lh:objective_function"  )
RealOptionKey const basic::options::OptionKeys::lh::radius_size ( "lh:radius_size"  )
StringOptionKey const basic::options::OptionKeys::lh::refstruct ( "lh:refstruct"  )
RealOptionKey const basic::options::OptionKeys::lh::rms_limit ( "lh:rms_limit"  )
IntegerOptionKey const basic::options::OptionKeys::lh::rounds ( "lh:rounds"  )
FileOptionKey const basic::options::OptionKeys::lh::sample_weight_file ( "lh:sample_weight_file"  )
BooleanOptionKey const basic::options::OptionKeys::lh::sandbox ( "lh:sandbox"  )
IntegerOptionKey const basic::options::OptionKeys::lh::skim_size ( "lh:skim_size"  )
BooleanOptionKey const basic::options::OptionKeys::lh::write_all_fa_structs ( "lh:write_all_fa_structs"  )
BooleanOptionKey const basic::options::OptionKeys::lh::write_centroid_structs ( "lh:write_centroid_structs"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::lh::bss("lh:bss")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::centroid_only("lh:centroid_only")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::create_db("lh:create_db")

Referenced by add_rosetta_options_2().

RealVectorOptionKey const basic::options::OptionKeys::lh::createdb_rms_cutoff("lh:createdb_rms_cutoff")

Referenced by add_rosetta_options_2().

PathOptionKey const basic::options::OptionKeys::lh::db_path("lh:db_path")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::exclude_homo("lh:exclude_homo")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::expire_after_rounds("lh:expire_after_rounds")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::filter_by_phipsi("lh:filter_by_phipsi")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::grid_angle_multiplier("lh:grid_angle_multiplier")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::grid_space_multiplier("lh:grid_space_multiplier")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::homo_file("lh:homo_file")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::jobname("lh:jobname")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::lh("lh")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::library_expiry_time("lh:library_expiry_time")

Referenced by add_rosetta_options_2().

IntegerVectorOptionKey const basic::options::OptionKeys::lh::loopsizes("lh:loopsizes")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::max_bbrms("lh:max_bbrms")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_round("lh:max_emperor_lib_round")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_size("lh:max_emperor_lib_size")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_lib_size("lh:max_lib_size")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_loophash_per_structure("lh:max_loophash_per_structure")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_radius("lh:max_radius")
RealOptionKey const basic::options::OptionKeys::lh::max_rms("lh:max_rms")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct("lh:max_struct")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct_per_radius("lh:max_struct_per_radius")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::min_bbrms("lh:min_bbrms")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::min_rms("lh:min_rms")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_absolute_max("lh:mpi_batch_relax_absolute_max")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_chunks("lh:mpi_batch_relax_chunks")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::mpi_feedback("lh:mpi_feedback")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_loophash_split_size("lh:mpi_loophash_split_size ")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_master_save_score_only("lh:mpi_master_save_score_only")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::mpi_metropolis_temp("lh:mpi_metropolis_temp")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_outbound_wu_buffer_size("lh:mpi_outbound_wu_buffer_size")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::mpi_resume("lh:mpi_resume")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_save_state_interval("lh:mpi_save_state_interval")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::num_partitions("lh:num_partitions")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::objective_function("lh:objective_function")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::radius_size("lh:radius_size")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::lh::refstruct("lh:refstruct")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::lh::rms_limit("lh:rms_limit")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::rounds("lh:rounds")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::lh::sample_weight_file("lh:sample_weight_file")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::sandbox("lh:sandbox")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::lh::skim_size("lh:skim_size")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::write_all_fa_structs("lh:write_all_fa_structs")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::lh::write_centroid_structs("lh:write_centroid_structs")

Referenced by add_rosetta_options_2().