Rosetta Utilities  2014.35
Namespaces | Variables
basic::options::OptionKeys::relax Namespace Reference

Namespaces

 centroid
 

Variables

BooleanOptionKey const relax ("relax")
 
BooleanOptionKey const fast ("relax:fast")
 
BooleanOptionKey const thorough ("relax:thorough")
 
BooleanOptionKey const centroid_mode ("relax:centroid_mode")
 
IntegerOptionKey const default_repeats ("relax:default_repeats")
 
BooleanOptionKey const dualspace ("relax:dualspace")
 
BooleanOptionKey const ramady ("relax:ramady")
 
RealOptionKey const ramady_rms_limit ("relax:ramady_rms_limit")
 
RealOptionKey const ramady_cutoff ("relax:ramady_cutoff")
 
IntegerOptionKey const ramady_max_rebuild ("relax:ramady_max_rebuild")
 
BooleanOptionKey const ramady_force ("relax:ramady_force")
 
FileOptionKey const script ("relax:script")
 
IntegerOptionKey const script_max_accept ("relax:script_max_accept")
 
BooleanOptionKey const superimpose_to_native ("relax:superimpose_to_native")
 
FileOptionKey const superimpose_to_file ("relax:superimpose_to_file")
 
BooleanOptionKey const constrain_relax_to_native_coords ("relax:constrain_relax_to_native_coords")
 
BooleanOptionKey const constrain_relax_to_start_coords ("relax:constrain_relax_to_start_coords")
 
BooleanOptionKey const coord_constrain_sidechains ("relax:coord_constrain_sidechains")
 
RealOptionKey const sc_cst_maxdist ("relax:sc_cst_maxdist")
 
BooleanOptionKey const limit_aroma_chi2 ("relax:limit_aroma_chi2")
 
BooleanOptionKey const respect_resfile ("relax:respect_resfile")
 
BooleanOptionKey const bb_move ("relax:bb_move")
 
BooleanOptionKey const chi_move ("relax:chi_move")
 
BooleanOptionKey const jump_move ("relax:jump_move")
 
BooleanOptionKey const dna_move ("relax:dna_move")
 
BooleanOptionKey const fix_omega ("relax:fix_omega")
 
BooleanOptionKey const minimize_bond_lengths ("relax:minimize_bond_lengths")
 
BooleanOptionKey const minimize_bond_angles ("relax:minimize_bond_angles")
 
IntegerOptionKey const minimize_bondlength_subset ("relax:minimize_bondlength_subset")
 
IntegerOptionKey const minimize_bondangle_subset ("relax:minimize_bondangle_subset")
 
StringOptionKey const min_type ("relax:min_type")
 
BooleanOptionKey const cartesian ("relax:cartesian")
 
RealOptionKey const chainbreak_weight ("relax:chainbreak_weight")
 
RealOptionKey const linear_chainbreak_weight ("relax:linear_chainbreak_weight")
 
RealOptionKey const overlap_chainbreak_weight ("relax:overlap_chainbreak_weight")
 
BooleanOptionKey const classic ("relax:classic")
 
FileOptionKey const sequence_file ("relax:sequence_file")
 
BooleanOptionKey const quick ("relax:quick")
 
BooleanOptionKey const sequence ("relax:sequence")
 
IntegerOptionKey const minirelax_repeats ("relax:minirelax_repeats")
 
RealOptionKey const minirelax_sdev ("relax:minirelax_sdev")
 
BooleanOptionKey const wobblemoves ("relax:wobblemoves")
 
FileOptionKey const constrain_relax_segments ("relax:constrain_relax_segments")
 
RealOptionKey const coord_cst_width ("relax:coord_cst_width")
 
RealOptionKey const coord_cst_stdev ("relax:coord_cst_stdev")
 
BooleanOptionKey const ramp_constraints ("relax:ramp_constraints")
 
RealOptionKey const energycut ("relax:energycut")
 
BooleanOptionKey const mini ("relax:mini")
 
IntegerOptionKey const stage1_ramp_cycles ("relax:stage1_ramp_cycles")
 
IntegerOptionKey const stage1_ramp_inner_cycles ("relax:stage1_ramp_inner_cycles")
 
IntegerOptionKey const stage2_repack_period ("relax:stage2_repack_period")
 
IntegerOptionKey const stage2_cycles ("relax:stage2_cycles")
 
RealOptionKey const min_tolerance ("relax:min_tolerance")
 
IntegerOptionKey const stage3_cycles ("relax:stage3_cycles")
 
RealOptionKey const cycle_ratio ("relax:cycle_ratio")
 
RealOptionKey const filter_stage2_beginning ("relax:filter_stage2_beginning")
 
RealOptionKey const filter_stage2_quarter ("relax:filter_stage2_quarter")
 
RealOptionKey const filter_stage2_half ("relax:filter_stage2_half")
 
RealOptionKey const filter_stage2_end ("relax:filter_stage2_end")
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::relax::bb_move

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::cartesian

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::centroid_mode

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::chainbreak_weight
BooleanOptionKey const basic::options::OptionKeys::relax::chi_move

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::classic

Referenced by add_rosetta_options_3().

FileOptionKey const basic::options::OptionKeys::relax::constrain_relax_segments

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_native_coords

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_start_coords

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::coord_constrain_sidechains

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_stdev

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_width

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::cycle_ratio

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::default_repeats

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::dna_move

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::dualspace

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::energycut

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::fast
RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_beginning

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_end

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_half

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_quarter

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::fix_omega

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::jump_move

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::limit_aroma_chi2

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::linear_chainbreak_weight

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::min_tolerance

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::relax::min_type

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::mini

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_angles

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_lengths

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondangle_subset

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondlength_subset

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::minirelax_repeats

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::minirelax_sdev

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::overlap_chainbreak_weight

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::quick

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::ramady_cutoff

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady_force

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::ramady_max_rebuild

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::ramady_rms_limit

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::ramp_constraints

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::relax
BooleanOptionKey const basic::options::OptionKeys::relax::respect_resfile

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::relax::sc_cst_maxdist

Referenced by add_rosetta_options_3().

FileOptionKey const basic::options::OptionKeys::relax::script
IntegerOptionKey const basic::options::OptionKeys::relax::script_max_accept

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::sequence

Referenced by add_rosetta_options_3().

FileOptionKey const basic::options::OptionKeys::relax::sequence_file

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_cycles

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_inner_cycles

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_cycles

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_repack_period

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::relax::stage3_cycles

Referenced by add_rosetta_options_3().

FileOptionKey const basic::options::OptionKeys::relax::superimpose_to_file

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::superimpose_to_native

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::thorough

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::relax::wobblemoves

Referenced by add_rosetta_options_3().