Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::cm Namespace Reference

Namespaces

 hybridize
 
 sanitize
 

Functions

BooleanOptionKey const cm ("cm")
 
BooleanOptionKey const start_models_only ("cm:start_models_only")
 
StringOptionKey const aln_format ("cm:aln_format")
 
BooleanOptionKey const recover_side_chains ("cm:recover_side_chains")
 
FileVectorOptionKey const steal_extra_residues ("cm:steal_extra_residues")
 
StringOptionKey const loop_mover ("cm:loop_mover")
 
IntegerOptionKey const loop_close_level ("cm:loop_close_level")
 
IntegerOptionKey const min_loop_size ("cm:min_loop_size")
 
IntegerOptionKey const max_loop_rebuild ("cm:max_loop_rebuild")
 
RealOptionKey const loop_rebuild_filter ("cm:loop_rebuild_filter")
 
RealOptionKey const aln_length_filter_quantile ("cm:aln_length_filter_quantile")
 
IntegerOptionKey const aln_length_filter ("cm:aln_length_filter")
 
StringVectorOptionKey const seq_score ("cm:seq_score")
 
StringOptionKey const aligner ("cm:aligner")
 
RealOptionKey const min_gap_open ("cm:min_gap_open")
 
RealOptionKey const max_gap_open ("cm:max_gap_open")
 
RealOptionKey const min_gap_extend ("cm:min_gap_extend")
 
RealOptionKey const max_gap_extend ("cm:max_gap_extend")
 
IntegerOptionKey const nn ("cm:nn")
 
FileVectorOptionKey const ev_map ("cm:ev_map")
 
FileVectorOptionKey const hh_map ("cm:hh_map")
 

Variables

BooleanOptionKey const cm
 
BooleanOptionKey const start_models_only
 
StringOptionKey const aln_format
 
BooleanOptionKey const recover_side_chains
 
FileVectorOptionKey const steal_extra_residues
 
StringOptionKey const loop_mover
 
IntegerOptionKey const loop_close_level
 
IntegerOptionKey const min_loop_size
 
IntegerOptionKey const max_loop_rebuild
 
RealOptionKey const loop_rebuild_filter
 
RealOptionKey const aln_length_filter_quantile
 
IntegerOptionKey const aln_length_filter
 
StringVectorOptionKey const seq_score
 
StringOptionKey const aligner
 
RealOptionKey const min_gap_open
 
RealOptionKey const max_gap_open
 
RealOptionKey const min_gap_extend
 
RealOptionKey const max_gap_extend
 
IntegerOptionKey const nn
 
FileVectorOptionKey const ev_map
 
FileVectorOptionKey const hh_map
 

Function Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner ( "cm:aligner"  )
StringOptionKey const basic::options::OptionKeys::cm::aln_format ( "cm:aln_format"  )
IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter ( "cm:aln_length_filter"  )
RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile ( "cm:aln_length_filter_quantile"  )
BooleanOptionKey const basic::options::OptionKeys::cm::cm ( "cm"  )
FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map ( "cm:ev_map"  )
FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map ( "cm:hh_map"  )
IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level ( "cm:loop_close_level"  )
StringOptionKey const basic::options::OptionKeys::cm::loop_mover ( "cm:loop_mover"  )
RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter ( "cm:loop_rebuild_filter"  )
RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend ( "cm:max_gap_extend"  )
RealOptionKey const basic::options::OptionKeys::cm::max_gap_open ( "cm:max_gap_open"  )
IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild ( "cm:max_loop_rebuild"  )
RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend ( "cm:min_gap_extend"  )
RealOptionKey const basic::options::OptionKeys::cm::min_gap_open ( "cm:min_gap_open"  )
IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size ( "cm:min_loop_size"  )
IntegerOptionKey const basic::options::OptionKeys::cm::nn ( "cm:nn"  )
BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains ( "cm:recover_side_chains"  )
StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score ( "cm:seq_score"  )
BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only ( "cm:start_models_only"  )
FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues ( "cm:steal_extra_residues"  )

Variable Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner("cm:aligner")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::cm::aln_format("cm:aln_format")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter("cm:aln_length_filter")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile("cm:aln_length_filter_quantile")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cm::cm("cm")

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map("cm:ev_map")

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map("cm:hh_map")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level("cm:loop_close_level")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::cm::loop_mover("cm:loop_mover")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter("cm:loop_rebuild_filter")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend("cm:max_gap_extend")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open("cm:max_gap_open")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild("cm:max_loop_rebuild")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend("cm:min_gap_extend")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open("cm:min_gap_open")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size("cm:min_loop_size")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::cm::nn("cm:nn")
BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains("cm:recover_side_chains")

Referenced by add_rosetta_options_1().

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score("cm:seq_score")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only("cm:start_models_only")

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues("cm:steal_extra_residues")

Referenced by add_rosetta_options_1().