Rosetta Utilities  2014.35
Variables
basic::options::OptionKeys::run Namespace Reference

Variables

BooleanOptionKey const run ("run")
 
FileVectorOptionKey const batches ("run:batches")
 
BooleanOptionKey const no_prof_info_in_silentout ("run:no_prof_info_in_silentout")
 
BooleanOptionKey const archive ("run:archive")
 
IntegerOptionKey const n_replica ("run:n_replica")
 
BooleanOptionKey const shuffle ("run:shuffle")
 
IntegerOptionKey const n_cycles ("run:n_cycles")
 
IntegerOptionKey const repeat ("run:repeat")
 
IntegerOptionKey const max_min_iter ("run:max_min_iter")
 
IntegerOptionKey const maxruntime ("run:maxruntime")
 
BooleanOptionKey const write_failures ("run:write_failures")
 
BooleanOptionKey const benchmark ("run:benchmark")
 
BooleanOptionKey const test_cycles ("run:test_cycles")
 
BooleanOptionKey const memory_test_cycles ("run:memory_test_cycles")
 
BooleanOptionKey const dry_run ("run:dry_run")
 
BooleanOptionKey const debug ("run:debug")
 
BooleanOptionKey const profile ("run:profile")
 
IntegerOptionKey const max_retry_job ("run:max_retry_job")
 
BooleanOptionKey const version ("run:version")
 
BooleanOptionKey const nodelay ("run:nodelay")
 
IntegerOptionKey const delay ("run:delay")
 
IntegerOptionKey const random_delay ("run:random_delay")
 
BooleanOptionKey const timer ("run:timer")
 
StringOptionKey const chain ("run:chain")
 
BooleanOptionKey const score_only ("run:score_only")
 
BooleanOptionKey const decoystats ("run:decoystats")
 
BooleanOptionKey const output_hbond_info ("run:output_hbond_info")
 
RealOptionKey const wide_nblist_extension ("run:wide_nblist_extension")
 
BooleanOptionKey const constant_seed ("run:constant_seed")
 
IntegerOptionKey const jran ("run:jran")
 
BooleanOptionKey const use_time_as_seed ("run:use_time_as_seed")
 
StringOptionKey const rng_seed_device ("run:rng_seed_device")
 
IntegerOptionKey const seed_offset ("run:seed_offset")
 
StringOptionKey const rng ("run:rng")
 
BooleanOptionKey const rebuild_disulf ("run:rebuild_disulf")
 
BooleanOptionKey const preserve_header ("run:preserve_header")
 
BooleanOptionKey const suppress_checkpoints ("run:suppress_checkpoints")
 
BooleanOptionKey const checkpoint ("run:checkpoint")
 
BooleanOptionKey const delete_checkpoints ("run:delete_checkpoints")
 
IntegerOptionKey const checkpoint_interval ("run:checkpoint_interval")
 
StringOptionKey const protocol ("run:protocol")
 
BooleanOptionKey const remove_ss_length_screen ("run:remove_ss_length_screen")
 
StringOptionKey const min_type ("run:min_type")
 
RealOptionKey const min_tolerance ("run:min_tolerance")
 
BooleanOptionKey const nblist_autoupdate ("run:nblist_autoupdate")
 
RealOptionKey const nblist_autoupdate_narrow ("run:nblist_autoupdate_narrow")
 
RealOptionKey const nblist_autoupdate_wide ("run:nblist_autoupdate_wide")
 
BooleanOptionKey const skip_set_reasonable_fold_tree ("run:skip_set_reasonable_fold_tree")
 
BooleanOptionKey const randomize_missing_coords ("run:randomize_missing_coords")
 
BooleanOptionKey const ignore_zero_occupancy ("run:ignore_zero_occupancy")
 
IntegerOptionKey const cycles_outer ("run:cycles_outer")
 
IntegerOptionKey const cycles_inner ("run:cycles_inner")
 
IntegerOptionKey const repack_rate ("run:repack_rate")
 
BooleanOptionKey const reinitialize_mover_for_each_job ("run:reinitialize_mover_for_each_job")
 
BooleanOptionKey const reinitialize_mover_for_new_input ("run:reinitialize_mover_for_new_input")
 
BooleanOptionKey const multiple_processes_writing_to_one_directory ("run:multiple_processes_writing_to_one_directory")
 
StringOptionKey const jobdist_miscfile_ext ("run:jobdist_miscfile_ext")
 
BooleanOptionKey const no_scorefile ("run:no_scorefile")
 
BooleanOptionKey const other_pose_to_scorefile ("run:other_pose_to_scorefile")
 
FileOptionKey const other_pose_scorefile ("run:other_pose_scorefile")
 
BooleanOptionKey const intermediate_scorefiles ("run:intermediate_scorefiles")
 
BooleanOptionKey const intermediate_structures ("run:intermediate_structures")
 
BooleanOptionKey const idealize_before_protocol ("run:idealize_before_protocol")
 
BooleanOptionKey const interactive ("run:interactive")
 
BooleanOptionKey const condor ("run:condor")
 
IntegerOptionKey const nproc ("run:nproc")
 
IntegerOptionKey const proc_id ("run:proc_id")
 
BooleanOptionKey const exit_if_missing_heavy_atoms ("run:exit_if_missing_heavy_atoms")
 
RealOptionKey const show_simulation_in_pymol ("run:show_simulation_in_pymol")
 
BooleanOptionKey const update_pymol_on_energy_changes_only ("run:update_pymol_on_energy_changes_only")
 
BooleanOptionKey const update_pymol_on_conformation_changes_only ("run:update_pymol_on_conformation_changes_only")
 
BooleanOptionKey const keep_pymol_simulation_history ("run:keep_pymol_simulation_history")
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::run::archive

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::run::batches

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::benchmark
StringOptionKey const basic::options::OptionKeys::run::chain
BooleanOptionKey const basic::options::OptionKeys::run::checkpoint

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::checkpoint_interval

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::condor

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::constant_seed

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_inner

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_outer

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::debug

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::decoystats

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::delay

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::delete_checkpoints

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::dry_run

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::exit_if_missing_heavy_atoms

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::idealize_before_protocol

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::ignore_zero_occupancy

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::interactive

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_scorefiles

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_structures

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::jobdist_miscfile_ext

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::jran

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::keep_pymol_simulation_history

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::max_min_iter

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::max_retry_job

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::maxruntime

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::memory_test_cycles

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::min_tolerance

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::min_type

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::multiple_processes_writing_to_one_directory

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::n_cycles

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::n_replica

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::nblist_autoupdate

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_narrow

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_wide

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::no_prof_info_in_silentout

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::no_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::nodelay

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::nproc

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::run::other_pose_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::other_pose_to_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::output_hbond_info

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::preserve_header

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::proc_id

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::profile
StringOptionKey const basic::options::OptionKeys::run::protocol

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::random_delay

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::randomize_missing_coords

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::rebuild_disulf

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_each_job

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_new_input

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::remove_ss_length_screen

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::repack_rate

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::repeat

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::rng

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::rng_seed_device

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::run

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::score_only

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::seed_offset
RealOptionKey const basic::options::OptionKeys::run::show_simulation_in_pymol

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::shuffle

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::skip_set_reasonable_fold_tree

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::suppress_checkpoints

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::test_cycles

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::timer

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_conformation_changes_only

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_energy_changes_only

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::use_time_as_seed

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::version

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::wide_nblist_extension

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::write_failures

Referenced by add_rosetta_options_0().