Rosetta Utilities  2014.35
Namespaces | Functions | Variables
basic::options::OptionKeys::docking Namespace Reference

Namespaces

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Functions

BooleanOptionKey const kick_relax ("docking:kick_relax")
 
BooleanOptionKey const docking ("docking")
 
BooleanOptionKey const view ("docking:view")
 
BooleanOptionKey const no_filters ("docking:no_filters")
 
StringVectorOptionKey const design_chains ("docking:design_chains")
 
FileOptionKey const recover_sidechains ("docking:recover_sidechains")
 
StringOptionKey const partners ("docking:partners")
 
BooleanOptionKey const docking_local_refine ("docking:docking_local_refine")
 
BooleanOptionKey const low_res_protocol_only ("docking:low_res_protocol_only")
 
BooleanOptionKey const randomize1 ("docking:randomize1")
 
BooleanOptionKey const randomize2 ("docking:randomize2")
 
BooleanOptionKey const use_ellipsoidal_randomization ("docking:use_ellipsoidal_randomization")
 
BooleanOptionKey const spin ("docking:spin")
 
RealVectorOptionKey const dock_pert ("docking:dock_pert")
 
RealOptionKey const uniform_trans ("docking:uniform_trans")
 
BooleanOptionKey const center_at_interface ("docking:center_at_interface")
 
IntegerOptionKey const dock_mcm_first_cycles ("docking:dock_mcm_first_cycles")
 
IntegerOptionKey const dock_mcm_second_cycles ("docking:dock_mcm_second_cycles")
 
IntegerOptionKey const docking_centroid_outer_cycles ("docking:docking_centroid_outer_cycles")
 
IntegerOptionKey const docking_centroid_inner_cycles ("docking:docking_centroid_inner_cycles")
 
BooleanOptionKey const dock_min ("docking:dock_min")
 
StringOptionKey const flexible_bb_docking ("docking:flexible_bb_docking")
 
RealOptionKey const flexible_bb_docking_interface_dist ("docking:flexible_bb_docking_interface_dist")
 
StringOptionKey const ensemble1 ("docking:ensemble1")
 
StringOptionKey const ensemble2 ("docking:ensemble2")
 
RealOptionKey const dock_mcm_trans_magnitude ("docking:dock_mcm_trans_magnitude")
 
RealOptionKey const dock_mcm_rot_magnitude ("docking:dock_mcm_rot_magnitude")
 
RealOptionKey const minimization_threshold ("docking:minimization_threshold")
 
RealOptionKey const temperature ("docking:temperature")
 
IntegerOptionKey const repack_period ("docking:repack_period")
 
BooleanOptionKey const extra_rottrial ("docking:extra_rottrial")
 
BooleanOptionKey const dock_rtmin ("docking:dock_rtmin")
 
BooleanOptionKey const sc_min ("docking:sc_min")
 
BooleanOptionKey const norepack1 ("docking:norepack1")
 
BooleanOptionKey const norepack2 ("docking:norepack2")
 
IntegerVectorOptionKey const bb_min_res ("docking:bb_min_res")
 
IntegerVectorOptionKey const sc_min_res ("docking:sc_min_res")
 
BooleanOptionKey const dock_ppk ("docking:dock_ppk")
 
IntegerOptionKey const max_repeats ("docking:max_repeats")
 
RealVectorOptionKey const dock_lowres_filter ("docking:dock_lowres_filter")
 
IntegerVectorOptionKey const multibody ("docking:multibody")
 
BooleanOptionKey const ignore_default_docking_task ("docking:ignore_default_docking_task")
 
StringOptionKey const low_patch ("docking:low_patch")
 
StringOptionKey const high_patch ("docking:high_patch")
 
StringOptionKey const high_min_patch ("docking:high_min_patch")
 
StringOptionKey const pack_patch ("docking:pack_patch")
 
BooleanOptionKey const use_legacy_protocol ("docking:use_legacy_protocol")
 
RealOptionKey const docklowres_trans_magnitude ("docking:docklowres_trans_magnitude")
 
RealOptionKey const docklowres_rot_magnitude ("docking:docklowres_rot_magnitude")
 

Variables

BooleanOptionKey const kick_relax
 
BooleanOptionKey const docking
 
BooleanOptionKey const view
 
BooleanOptionKey const no_filters
 
StringVectorOptionKey const design_chains
 
FileOptionKey const recover_sidechains
 
StringOptionKey const partners
 
BooleanOptionKey const docking_local_refine
 
BooleanOptionKey const low_res_protocol_only
 
BooleanOptionKey const randomize1
 
BooleanOptionKey const randomize2
 
BooleanOptionKey const use_ellipsoidal_randomization
 
BooleanOptionKey const spin
 
RealVectorOptionKey const dock_pert
 
RealOptionKey const uniform_trans
 
BooleanOptionKey const center_at_interface
 
IntegerOptionKey const dock_mcm_first_cycles
 
IntegerOptionKey const dock_mcm_second_cycles
 
IntegerOptionKey const docking_centroid_outer_cycles
 
IntegerOptionKey const docking_centroid_inner_cycles
 
BooleanOptionKey const dock_min
 
StringOptionKey const flexible_bb_docking
 
RealOptionKey const flexible_bb_docking_interface_dist
 
StringOptionKey const ensemble1
 
StringOptionKey const ensemble2
 
RealOptionKey const dock_mcm_trans_magnitude
 
RealOptionKey const dock_mcm_rot_magnitude
 
RealOptionKey const minimization_threshold
 
RealOptionKey const temperature
 
IntegerOptionKey const repack_period
 
BooleanOptionKey const extra_rottrial
 
BooleanOptionKey const dock_rtmin
 
BooleanOptionKey const sc_min
 
BooleanOptionKey const norepack1
 
BooleanOptionKey const norepack2
 
IntegerVectorOptionKey const bb_min_res
 
IntegerVectorOptionKey const sc_min_res
 
BooleanOptionKey const dock_ppk
 
IntegerOptionKey const max_repeats
 
RealVectorOptionKey const dock_lowres_filter
 
IntegerVectorOptionKey const multibody
 
BooleanOptionKey const ignore_default_docking_task
 
StringOptionKey const low_patch
 
StringOptionKey const high_patch
 
StringOptionKey const high_min_patch
 
StringOptionKey const pack_patch
 
BooleanOptionKey const use_legacy_protocol
 
RealOptionKey const docklowres_trans_magnitude
 
RealOptionKey const docklowres_rot_magnitude
 

Function Documentation

IntegerVectorOptionKey const basic::options::OptionKeys::docking::bb_min_res ( "docking:bb_min_res"  )
BooleanOptionKey const basic::options::OptionKeys::docking::center_at_interface ( "docking:center_at_interface"  )
StringVectorOptionKey const basic::options::OptionKeys::docking::design_chains ( "docking:design_chains"  )
RealVectorOptionKey const basic::options::OptionKeys::docking::dock_lowres_filter ( "docking:dock_lowres_filter"  )
IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_first_cycles ( "docking:dock_mcm_first_cycles"  )
RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_rot_magnitude ( "docking:dock_mcm_rot_magnitude"  )
IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_second_cycles ( "docking:dock_mcm_second_cycles"  )
RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_trans_magnitude ( "docking:dock_mcm_trans_magnitude"  )
BooleanOptionKey const basic::options::OptionKeys::docking::dock_min ( "docking:dock_min"  )
RealVectorOptionKey const basic::options::OptionKeys::docking::dock_pert ( "docking:dock_pert"  )
BooleanOptionKey const basic::options::OptionKeys::docking::dock_ppk ( "docking:dock_ppk"  )
BooleanOptionKey const basic::options::OptionKeys::docking::dock_rtmin ( "docking:dock_rtmin"  )
BooleanOptionKey const basic::options::OptionKeys::docking::docking ( "docking"  )
IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_inner_cycles ( "docking:docking_centroid_inner_cycles"  )
IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_outer_cycles ( "docking:docking_centroid_outer_cycles"  )
BooleanOptionKey const basic::options::OptionKeys::docking::docking_local_refine ( "docking:docking_local_refine"  )
RealOptionKey const basic::options::OptionKeys::docking::docklowres_rot_magnitude ( "docking:docklowres_rot_magnitude"  )
RealOptionKey const basic::options::OptionKeys::docking::docklowres_trans_magnitude ( "docking:docklowres_trans_magnitude"  )
StringOptionKey const basic::options::OptionKeys::docking::ensemble1 ( "docking:ensemble1"  )
StringOptionKey const basic::options::OptionKeys::docking::ensemble2 ( "docking:ensemble2"  )
BooleanOptionKey const basic::options::OptionKeys::docking::extra_rottrial ( "docking:extra_rottrial"  )
StringOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking ( "docking:flexible_bb_docking"  )
RealOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking_interface_dist ( "docking:flexible_bb_docking_interface_dist"  )
StringOptionKey const basic::options::OptionKeys::docking::high_min_patch ( "docking:high_min_patch"  )
StringOptionKey const basic::options::OptionKeys::docking::high_patch ( "docking:high_patch"  )
BooleanOptionKey const basic::options::OptionKeys::docking::ignore_default_docking_task ( "docking:ignore_default_docking_task"  )
BooleanOptionKey const basic::options::OptionKeys::docking::kick_relax ( "docking:kick_relax"  )
StringOptionKey const basic::options::OptionKeys::docking::low_patch ( "docking:low_patch"  )
BooleanOptionKey const basic::options::OptionKeys::docking::low_res_protocol_only ( "docking:low_res_protocol_only"  )
IntegerOptionKey const basic::options::OptionKeys::docking::max_repeats ( "docking:max_repeats"  )
RealOptionKey const basic::options::OptionKeys::docking::minimization_threshold ( "docking:minimization_threshold"  )
IntegerVectorOptionKey const basic::options::OptionKeys::docking::multibody ( "docking:multibody"  )
BooleanOptionKey const basic::options::OptionKeys::docking::no_filters ( "docking:no_filters"  )
BooleanOptionKey const basic::options::OptionKeys::docking::norepack1 ( "docking:norepack1"  )
BooleanOptionKey const basic::options::OptionKeys::docking::norepack2 ( "docking:norepack2"  )
StringOptionKey const basic::options::OptionKeys::docking::pack_patch ( "docking:pack_patch"  )
StringOptionKey const basic::options::OptionKeys::docking::partners ( "docking:partners"  )
BooleanOptionKey const basic::options::OptionKeys::docking::randomize1 ( "docking:randomize1"  )
BooleanOptionKey const basic::options::OptionKeys::docking::randomize2 ( "docking:randomize2"  )
FileOptionKey const basic::options::OptionKeys::docking::recover_sidechains ( "docking:recover_sidechains"  )
IntegerOptionKey const basic::options::OptionKeys::docking::repack_period ( "docking:repack_period"  )
BooleanOptionKey const basic::options::OptionKeys::docking::sc_min ( "docking:sc_min"  )
IntegerVectorOptionKey const basic::options::OptionKeys::docking::sc_min_res ( "docking:sc_min_res"  )
BooleanOptionKey const basic::options::OptionKeys::docking::spin ( "docking:spin"  )
RealOptionKey const basic::options::OptionKeys::docking::temperature ( "docking:temperature"  )
RealOptionKey const basic::options::OptionKeys::docking::uniform_trans ( "docking:uniform_trans"  )
BooleanOptionKey const basic::options::OptionKeys::docking::use_ellipsoidal_randomization ( "docking:use_ellipsoidal_randomization"  )
BooleanOptionKey const basic::options::OptionKeys::docking::use_legacy_protocol ( "docking:use_legacy_protocol"  )
BooleanOptionKey const basic::options::OptionKeys::docking::view ( "docking:view"  )

Variable Documentation

IntegerVectorOptionKey const basic::options::OptionKeys::docking::bb_min_res("docking:bb_min_res")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::center_at_interface("docking:center_at_interface")

Referenced by add_rosetta_options_1().

StringVectorOptionKey const basic::options::OptionKeys::docking::design_chains("docking:design_chains")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_lowres_filter("docking:dock_lowres_filter")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_first_cycles("docking:dock_mcm_first_cycles")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_rot_magnitude("docking:dock_mcm_rot_magnitude")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_second_cycles("docking:dock_mcm_second_cycles")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_trans_magnitude("docking:dock_mcm_trans_magnitude")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_min("docking:dock_min")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_pert("docking:dock_pert")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_ppk("docking:dock_ppk")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_rtmin("docking:dock_rtmin")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::docking("docking")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_inner_cycles("docking:docking_centroid_inner_cycles")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_outer_cycles("docking:docking_centroid_outer_cycles")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::docking_local_refine("docking:docking_local_refine")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_rot_magnitude("docking:docklowres_rot_magnitude")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_trans_magnitude("docking:docklowres_trans_magnitude")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::ensemble1("docking:ensemble1")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::ensemble2("docking:ensemble2")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::extra_rottrial("docking:extra_rottrial")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking("docking:flexible_bb_docking")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking_interface_dist("docking:flexible_bb_docking_interface_dist")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::high_min_patch("docking:high_min_patch")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::high_patch("docking:high_patch")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::ignore_default_docking_task("docking:ignore_default_docking_task")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::kick_relax("docking:kick_relax")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::low_patch("docking:low_patch")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::low_res_protocol_only("docking:low_res_protocol_only")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::max_repeats("docking:max_repeats")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::minimization_threshold("docking:minimization_threshold")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::multibody("docking:multibody")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::no_filters("docking:no_filters")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack1("docking:norepack1")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack2("docking:norepack2")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::pack_patch("docking:pack_patch")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::docking::partners("docking:partners")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::randomize1("docking:randomize1")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::randomize2("docking:randomize2")

Referenced by add_rosetta_options_1().

FileOptionKey const basic::options::OptionKeys::docking::recover_sidechains("docking:recover_sidechains")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::docking::repack_period("docking:repack_period")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::sc_min("docking:sc_min")

Referenced by add_rosetta_options_1().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::sc_min_res("docking:sc_min_res")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::spin("docking:spin")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::temperature("docking:temperature")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::docking::uniform_trans("docking:uniform_trans")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::use_ellipsoidal_randomization("docking:use_ellipsoidal_randomization")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::use_legacy_protocol("docking:use_legacy_protocol")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::docking::view("docking:view")

Referenced by add_rosetta_options_1().