mh Namespace Reference

Namespaces
	filter
	score

Functions
BooleanOptionKey const	mh ("mh")
StringOptionKey const	motif_out_file ("mh:motif_out_file")
FileVectorOptionKey const	harvest_motifs ("mh:harvest_motifs")
FileVectorOptionKey const	print_motifs ("mh:print_motifs")
FileVectorOptionKey const	dump_motif_pdbs ("mh:dump_motif_pdbs")
FileVectorOptionKey const	merge_motifs ("mh:merge_motifs")
BooleanOptionKey const	generate_reverse_motifs ("mh:generate_reverse_motifs")
FileVectorOptionKey const	dump_input_pdb ("mh:dump_input_pdb")
FileVectorOptionKey const	xform_score_data ("mh:xform_score_data")
FileVectorOptionKey const	xform_score_data_ee ("mh:xform_score_data_ee")
FileVectorOptionKey const	xform_score_data_eh ("mh:xform_score_data_eh")
FileVectorOptionKey const	xform_score_data_he ("mh:xform_score_data_he")
FileVectorOptionKey const	xform_score_data_hh ("mh:xform_score_data_hh")
FileVectorOptionKey const	xform_score_data_sspair ("mh:xform_score_data_sspair")
FileVectorOptionKey const	input_motifs ("mh:input_motifs")
FileVectorOptionKey const	harvest_scores ("mh:harvest_scores")
FileOptionKey const	print_scores ("mh:print_scores")
FileVectorOptionKey const	dump_matching_motifs ("mh:dump_matching_motifs")
RealOptionKey const	dump_matching_motifs_cutoff ("mh:dump_matching_motifs_cutoff")
BooleanOptionKey const	score_across_chains_only ("mh:score_across_chains_only")
IntegerOptionKey const	dump_motif_pdbs_min_counts ("mh:dump_motif_pdbs_min_counts")
RealOptionKey const	hash_cart_size ("mh:hash_cart_size")
RealOptionKey const	hash_cart_resl ("mh:hash_cart_resl")
RealOptionKey const	hash_angle_resl ("mh:hash_angle_resl")
IntegerOptionKey const	harvest_motifs_min_hh_ends ("mh:harvest_motifs_min_hh_ends")
IntegerOptionKey const	harvest_scores_min_count ("mh:harvest_scores_min_count")
BooleanOptionKey const	ignore_io_errors ("mh:ignore_io_errors")
RealOptionKey const	motif_match_radius ("mh:motif_match_radius")
RealVectorOptionKey const	merge_similar_motifs ("mh:merge_similar_motifs")

Function Documentation

FileVectorOptionKey const mh::dump_input_pdb

(

"mh:dump_input_pdb"

)

FileVectorOptionKey const mh::dump_matching_motifs

(

"mh:dump_matching_motifs"

)

RealOptionKey const mh::dump_matching_motifs_cutoff

(

"mh:dump_matching_motifs_cutoff"

)

FileVectorOptionKey const mh::dump_motif_pdbs

(

"mh:dump_motif_pdbs"

)

IntegerOptionKey const mh::dump_motif_pdbs_min_counts

(

"mh:dump_motif_pdbs_min_counts"

)

BooleanOptionKey const mh::generate_reverse_motifs

(

"mh:generate_reverse_motifs"

)

FileVectorOptionKey const mh::harvest_motifs

(

"mh:harvest_motifs"

)

IntegerOptionKey const mh::harvest_motifs_min_hh_ends

(

"mh:harvest_motifs_min_hh_ends"

)

FileVectorOptionKey const mh::harvest_scores

(

"mh:harvest_scores"

)

IntegerOptionKey const mh::harvest_scores_min_count

(

"mh:harvest_scores_min_count"

)

RealOptionKey const mh::hash_angle_resl

(

"mh:hash_angle_resl"

)

RealOptionKey const mh::hash_cart_resl

(

"mh:hash_cart_resl"

)

RealOptionKey const mh::hash_cart_size

(

"mh:hash_cart_size"

)

BooleanOptionKey const mh::ignore_io_errors

(

"mh:ignore_io_errors"

)

FileVectorOptionKey const mh::input_motifs

(

"mh:input_motifs"

)

FileVectorOptionKey const mh::merge_motifs

(

"mh:merge_motifs"

)

RealVectorOptionKey const mh::merge_similar_motifs

(

"mh:merge_similar_motifs"

)

BooleanOptionKey const mh::mh

(

"mh"

)

RealOptionKey const mh::motif_match_radius

(

"mh:motif_match_radius"

)

StringOptionKey const mh::motif_out_file

(

"mh:motif_out_file"

)

FileVectorOptionKey const mh::print_motifs

(

"mh:print_motifs"

)

FileOptionKey const mh::print_scores

(

"mh:print_scores"

)

BooleanOptionKey const mh::score_across_chains_only

(

"mh:score_across_chains_only"

)

FileVectorOptionKey const mh::xform_score_data

(

"mh:xform_score_data"

)

FileVectorOptionKey const mh::xform_score_data_ee

(

"mh:xform_score_data_ee"

)

FileVectorOptionKey const mh::xform_score_data_eh

(

"mh:xform_score_data_eh"

)

FileVectorOptionKey const mh::xform_score_data_he

(

"mh:xform_score_data_he"

)

FileVectorOptionKey const mh::xform_score_data_hh

(

"mh:xform_score_data_hh"

)

FileVectorOptionKey const mh::xform_score_data_sspair

(

"mh:xform_score_data_sspair"

)