Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::flexPepDocking Namespace Reference

Functions

BooleanOptionKey const flexPepDocking ("flexPepDocking")
 
StringOptionKey const params_file ("flexPepDocking:params_file")
 
IntegerOptionKey const peptide_anchor ("flexPepDocking:peptide_anchor")
 
StringOptionKey const receptor_chain ("flexPepDocking:receptor_chain")
 
StringOptionKey const peptide_chain ("flexPepDocking:peptide_chain")
 
BooleanOptionKey const pep_fold_only ("flexPepDocking:pep_fold_only")
 
BooleanOptionKey const lowres_abinitio ("flexPepDocking:lowres_abinitio")
 
BooleanOptionKey const lowres_preoptimize ("flexPepDocking:lowres_preoptimize")
 
BooleanOptionKey const flexPepDockingMinimizeOnly ("flexPepDocking:flexPepDockingMinimizeOnly")
 
BooleanOptionKey const extend_peptide ("flexPepDocking:extend_peptide")
 
BooleanOptionKey const pep_refine ("flexPepDocking:pep_refine")
 
BooleanOptionKey const rbMCM ("flexPepDocking:rbMCM")
 
BooleanOptionKey const torsionsMCM ("flexPepDocking:torsionsMCM")
 
BooleanOptionKey const peptide_loop_model ("flexPepDocking:peptide_loop_model")
 
BooleanOptionKey const backrub_peptide ("flexPepDocking:backrub_peptide")
 
BooleanOptionKey const boost_fa_atr ("flexPepDocking:boost_fa_atr")
 
BooleanOptionKey const ramp_fa_rep ("flexPepDocking:ramp_fa_rep")
 
BooleanOptionKey const ramp_rama ("flexPepDocking:ramp_rama")
 
BooleanOptionKey const flexpep_score_only ("flexPepDocking:flexpep_score_only")
 
FileOptionKey const ref_startstruct ("flexPepDocking:ref_startstruct")
 
BooleanOptionKey const use_cen_score ("flexPepDocking:use_cen_score")
 
BooleanOptionKey const design_peptide ("flexPepDocking:design_peptide")
 
IntegerOptionKey const rep_ramp_cycles ("flexPepDocking:rep_ramp_cycles")
 
IntegerOptionKey const mcm_cycles ("flexPepDocking:mcm_cycles")
 
RealOptionKey const random_phi_psi_preturbation ("flexPepDocking:random_phi_psi_preturbation")
 
RealOptionKey const smove_angle_range ("flexPepDocking:smove_angle_range")
 
BooleanOptionKey const min_receptor_bb ("flexPepDocking:min_receptor_bb")
 
RealOptionKey const random_trans_start ("flexPepDocking:random_trans_start")
 
RealOptionKey const random_rot_start ("flexPepDocking:random_rot_start")
 
BooleanOptionKey const flexpep_prepack ("flexPepDocking:flexpep_prepack")
 
BooleanOptionKey const flexpep_noprepack1 ("flexPepDocking:flexpep_noprepack1")
 
BooleanOptionKey const flexpep_noprepack2 ("flexPepDocking:flexpep_noprepack2")
 
RealOptionKey const score_filter ("flexPepDocking:score_filter")
 
IntegerOptionKey const hb_filter ("flexPepDocking:hb_filter")
 
IntegerOptionKey const hotspot_filter ("flexPepDocking:hotspot_filter")
 
StringOptionKey const frag5 ("flexPepDocking:frag5")
 
RealOptionKey const frag9_weight ("flexPepDocking:frag9_weight")
 
RealOptionKey const frag5_weight ("flexPepDocking:frag5_weight")
 
RealOptionKey const frag3_weight ("flexPepDocking:frag3_weight")
 
BooleanOptionKey const pSer2Asp_centroid ("flexPepDocking:pSer2Asp_centroid")
 
BooleanOptionKey const pSer2Glu_centroid ("flexPepDocking:pSer2Glu_centroid")
 
BooleanOptionKey const dumpPDB_abinitio ("flexPepDocking:dumpPDB_abinitio")
 
BooleanOptionKey const dumpPDB_lowres ("flexPepDocking:dumpPDB_lowres")
 
BooleanOptionKey const dumpPDB_hires ("flexPepDocking:dumpPDB_hires")
 

Variables

BooleanOptionKey const flexPepDocking
 
StringOptionKey const params_file
 
IntegerOptionKey const peptide_anchor
 
StringOptionKey const receptor_chain
 
StringOptionKey const peptide_chain
 
BooleanOptionKey const pep_fold_only
 
BooleanOptionKey const lowres_abinitio
 
BooleanOptionKey const lowres_preoptimize
 
BooleanOptionKey const flexPepDockingMinimizeOnly
 
BooleanOptionKey const extend_peptide
 
BooleanOptionKey const pep_refine
 
BooleanOptionKey const rbMCM
 
BooleanOptionKey const torsionsMCM
 
BooleanOptionKey const peptide_loop_model
 
BooleanOptionKey const backrub_peptide
 
BooleanOptionKey const boost_fa_atr
 
BooleanOptionKey const ramp_fa_rep
 
BooleanOptionKey const ramp_rama
 
BooleanOptionKey const flexpep_score_only
 
FileOptionKey const ref_startstruct
 
BooleanOptionKey const use_cen_score
 
BooleanOptionKey const design_peptide
 
IntegerOptionKey const rep_ramp_cycles
 
IntegerOptionKey const mcm_cycles
 
RealOptionKey const random_phi_psi_preturbation
 
RealOptionKey const smove_angle_range
 
BooleanOptionKey const min_receptor_bb
 
RealOptionKey const random_trans_start
 
RealOptionKey const random_rot_start
 
BooleanOptionKey const flexpep_prepack
 
BooleanOptionKey const flexpep_noprepack1
 
BooleanOptionKey const flexpep_noprepack2
 
RealOptionKey const score_filter
 
IntegerOptionKey const hb_filter
 
IntegerOptionKey const hotspot_filter
 
StringOptionKey const frag5
 
RealOptionKey const frag9_weight
 
RealOptionKey const frag5_weight
 
RealOptionKey const frag3_weight
 
BooleanOptionKey const pSer2Asp_centroid
 
BooleanOptionKey const pSer2Glu_centroid
 
BooleanOptionKey const dumpPDB_abinitio
 
BooleanOptionKey const dumpPDB_lowres
 
BooleanOptionKey const dumpPDB_hires
 

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::backrub_peptide ( "flexPepDocking:backrub_peptide"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::boost_fa_atr ( "flexPepDocking:boost_fa_atr"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::design_peptide ( "flexPepDocking:design_peptide"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_abinitio ( "flexPepDocking:dumpPDB_abinitio"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_hires ( "flexPepDocking:dumpPDB_hires"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_lowres ( "flexPepDocking:dumpPDB_lowres"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::extend_peptide ( "flexPepDocking:extend_peptide"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack1 ( "flexPepDocking:flexpep_noprepack1"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack2 ( "flexPepDocking:flexpep_noprepack2"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_prepack ( "flexPepDocking:flexpep_prepack"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_score_only ( "flexPepDocking:flexpep_score_only"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDocking ( "flexPepDocking"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDockingMinimizeOnly ( "flexPepDocking:flexPepDockingMinimizeOnly"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag3_weight ( "flexPepDocking:frag3_weight"  )
StringOptionKey const basic::options::OptionKeys::flexPepDocking::frag5 ( "flexPepDocking:frag5"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag5_weight ( "flexPepDocking:frag5_weight"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag9_weight ( "flexPepDocking:frag9_weight"  )
IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hb_filter ( "flexPepDocking:hb_filter"  )
IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hotspot_filter ( "flexPepDocking:hotspot_filter"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_abinitio ( "flexPepDocking:lowres_abinitio"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_preoptimize ( "flexPepDocking:lowres_preoptimize"  )
IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::mcm_cycles ( "flexPepDocking:mcm_cycles"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::min_receptor_bb ( "flexPepDocking:min_receptor_bb"  )
StringOptionKey const basic::options::OptionKeys::flexPepDocking::params_file ( "flexPepDocking:params_file"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_fold_only ( "flexPepDocking:pep_fold_only"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_refine ( "flexPepDocking:pep_refine"  )
IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_anchor ( "flexPepDocking:peptide_anchor"  )
StringOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_chain ( "flexPepDocking:peptide_chain"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_loop_model ( "flexPepDocking:peptide_loop_model"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Asp_centroid ( "flexPepDocking:pSer2Asp_centroid"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Glu_centroid ( "flexPepDocking:pSer2Glu_centroid"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_fa_rep ( "flexPepDocking:ramp_fa_rep"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_rama ( "flexPepDocking:ramp_rama"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_phi_psi_preturbation ( "flexPepDocking:random_phi_psi_preturbation"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_rot_start ( "flexPepDocking:random_rot_start"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_trans_start ( "flexPepDocking:random_trans_start"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::rbMCM ( "flexPepDocking:rbMCM"  )
StringOptionKey const basic::options::OptionKeys::flexPepDocking::receptor_chain ( "flexPepDocking:receptor_chain"  )
FileOptionKey const basic::options::OptionKeys::flexPepDocking::ref_startstruct ( "flexPepDocking:ref_startstruct"  )
IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::rep_ramp_cycles ( "flexPepDocking:rep_ramp_cycles"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::score_filter ( "flexPepDocking:score_filter"  )
RealOptionKey const basic::options::OptionKeys::flexPepDocking::smove_angle_range ( "flexPepDocking:smove_angle_range"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::torsionsMCM ( "flexPepDocking:torsionsMCM"  )
BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::use_cen_score ( "flexPepDocking:use_cen_score"  )

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::backrub_peptide("flexPepDocking:backrub_peptide")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::boost_fa_atr("flexPepDocking:boost_fa_atr")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::design_peptide("flexPepDocking:design_peptide")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_abinitio("flexPepDocking:dumpPDB_abinitio")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_hires("flexPepDocking:dumpPDB_hires")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_lowres("flexPepDocking:dumpPDB_lowres")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::extend_peptide("flexPepDocking:extend_peptide")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack1("flexPepDocking:flexpep_noprepack1")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack2("flexPepDocking:flexpep_noprepack2")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_prepack("flexPepDocking:flexpep_prepack")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_score_only("flexPepDocking:flexpep_score_only")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDocking("flexPepDocking")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDockingMinimizeOnly("flexPepDocking:flexPepDockingMinimizeOnly")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag3_weight("flexPepDocking:frag3_weight")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::frag5("flexPepDocking:frag5")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag5_weight("flexPepDocking:frag5_weight")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag9_weight("flexPepDocking:frag9_weight")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hb_filter("flexPepDocking:hb_filter")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hotspot_filter("flexPepDocking:hotspot_filter")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_abinitio("flexPepDocking:lowres_abinitio")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_preoptimize("flexPepDocking:lowres_preoptimize")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::mcm_cycles("flexPepDocking:mcm_cycles")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::min_receptor_bb("flexPepDocking:min_receptor_bb")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::params_file("flexPepDocking:params_file")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_fold_only("flexPepDocking:pep_fold_only")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_refine("flexPepDocking:pep_refine")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_anchor("flexPepDocking:peptide_anchor")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_chain("flexPepDocking:peptide_chain")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_loop_model("flexPepDocking:peptide_loop_model")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Asp_centroid("flexPepDocking:pSer2Asp_centroid")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Glu_centroid("flexPepDocking:pSer2Glu_centroid")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_fa_rep("flexPepDocking:ramp_fa_rep")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_rama("flexPepDocking:ramp_rama")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_phi_psi_preturbation("flexPepDocking:random_phi_psi_preturbation")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_rot_start("flexPepDocking:random_rot_start")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_trans_start("flexPepDocking:random_trans_start")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::rbMCM("flexPepDocking:rbMCM")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::receptor_chain("flexPepDocking:receptor_chain")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::flexPepDocking::ref_startstruct("flexPepDocking:ref_startstruct")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::rep_ramp_cycles("flexPepDocking:rep_ramp_cycles")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::score_filter("flexPepDocking:score_filter")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::smove_angle_range("flexPepDocking:smove_angle_range")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::torsionsMCM("flexPepDocking:torsionsMCM")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::use_cen_score("flexPepDocking:use_cen_score")

Referenced by add_rosetta_options_2().