Rosetta Utilities  2014.35
Functions | Variables
basic::options::OptionKeys::enzdes Namespace Reference

Functions

BooleanOptionKey const enzdes ("enzdes")
 
StringOptionKey const checkpoint ("enzdes:checkpoint")
 
BooleanOptionKey const enz_score ("enzdes:enz_score")
 
BooleanOptionKey const enz_repack ("enzdes:enz_repack")
 
BooleanOptionKey const cst_opt ("enzdes:cst_opt")
 
BooleanOptionKey const cst_predock ("enzdes:cst_predock")
 
RealOptionKey const trans_magnitude ("enzdes:trans_magnitude")
 
RealOptionKey const rot_magnitude ("enzdes:rot_magnitude")
 
RealOptionKey const dock_trials ("enzdes:dock_trials")
 
BooleanOptionKey const cst_min ("enzdes:cst_min")
 
BooleanOptionKey const cst_design ("enzdes:cst_design")
 
IntegerOptionKey const design_min_cycles ("enzdes:design_min_cycles")
 
BooleanOptionKey const make_consensus_mutations ("enzdes:make_consensus_mutations")
 
BooleanOptionKey const bb_min ("enzdes:bb_min")
 
RealOptionKey const bb_min_allowed_dev ("enzdes:bb_min_allowed_dev")
 
RealOptionKey const loop_bb_min_allowed_dev ("enzdes:loop_bb_min_allowed_dev")
 
RealOptionKey const minimize_ligand_torsions ("enzdes:minimize_ligand_torsions")
 
RealOptionKey const minimize_all_ligand_torsions ("enzdes:minimize_all_ligand_torsions")
 
BooleanOptionKey const chi_min ("enzdes:chi_min")
 
BooleanOptionKey const min_all_jumps ("enzdes:min_all_jumps")
 
BooleanOptionKey const cst_dock ("enzdes:cst_dock")
 
BooleanOptionKey const run_ligand_motifs ("enzdes:run_ligand_motifs")
 
BooleanOptionKey const enz_debug ("enzdes:enz_debug")
 
FileOptionKey const cstfile ("enzdes:cstfile")
 
FileOptionKey const enz_loops_file ("enzdes:enz_loops_file")
 
BooleanOptionKey const flexbb_protocol ("enzdes:flexbb_protocol")
 
BooleanOptionKey const remodel_protocol ("enzdes:remodel_protocol")
 
BooleanOptionKey const kic_loop_sampling ("enzdes:kic_loop_sampling")
 
StringOptionKey const dump_loop_samples ("enzdes:dump_loop_samples")
 
BooleanOptionKey const fix_catalytic_aa ("enzdes:fix_catalytic_aa")
 
IntegerOptionKey const additional_packing_ligand_rb_confs ("enzdes:additional_packing_ligand_rb_confs")
 
IntegerOptionKey const ex_catalytic_rot ("enzdes:ex_catalytic_rot")
 
IntegerOptionKey const single_loop_ensemble_size ("enzdes:single_loop_ensemble_size")
 
IntegerOptionKey const loop_generator_trials ("enzdes:loop_generator_trials")
 
BooleanOptionKey const no_catres_min_in_loopgen ("enzdes:no_catres_min_in_loopgen")
 
RealOptionKey const mc_kt_low ("enzdes:mc_kt_low")
 
RealOptionKey const mc_kt_high ("enzdes:mc_kt_high")
 
RealOptionKey const min_cacb_deviation ("enzdes:min_cacb_deviation")
 
RealOptionKey const max_bb_deviation ("enzdes:max_bb_deviation")
 
RealOptionKey const max_bb_deviation_from_startstruct ("enzdes:max_bb_deviation_from_startstruct")
 
IntegerOptionKey const remodel_trials ("enzdes:remodel_trials")
 
BooleanOptionKey const remodel_secmatch ("enzdes:remodel_secmatch")
 
BooleanOptionKey const dump_inverse_rotamers ("enzdes:dump_inverse_rotamers")
 
RealOptionKey const remodel_aggressiveness ("enzdes:remodel_aggressiveness")
 
RealOptionKey const favor_native_res ("enzdes:favor_native_res")
 
BooleanOptionKey const detect_design_interface ("enzdes:detect_design_interface")
 
BooleanOptionKey const include_catres_in_interface_detection ("enzdes:include_catres_in_interface_detection")
 
BooleanOptionKey const arg_sweep_interface ("enzdes:arg_sweep_interface")
 
RealOptionKey const arg_sweep_cutoff ("enzdes:arg_sweep_cutoff")
 
RealOptionKey const cut1 ("enzdes:cut1")
 
RealOptionKey const cut2 ("enzdes:cut2")
 
RealOptionKey const cut3 ("enzdes:cut3")
 
RealOptionKey const cut4 ("enzdes:cut4")
 
RealOptionKey const lig_packer_weight ("enzdes:lig_packer_weight")
 
BooleanOptionKey const no_unconstrained_repack ("enzdes:no_unconstrained_repack")
 
RealOptionKey const secmatch_Ecutoff ("enzdes:secmatch_Ecutoff")
 
FileOptionKey const change_lig ("enzdes:change_lig")
 
StringOptionKey const process_ligrot_separately ("enzdes:process_ligrot_separately")
 
BooleanOptionKey const start_from_random_rb_conf ("enzdes:start_from_random_rb_conf")
 
RealOptionKey const bb_bump_cutoff ("enzdes:bb_bump_cutoff")
 
RealOptionKey const sc_sc_bump_cutoff ("enzdes:sc_sc_bump_cutoff")
 
BooleanOptionKey const no_packstat_calculation ("enzdes:no_packstat_calculation")
 
StringOptionKey const compare_native ("enzdes:compare_native")
 
BooleanOptionKey const final_repack_without_ligand ("enzdes:final_repack_without_ligand")
 
BooleanOptionKey const dump_final_repack_without_ligand_pdb ("enzdes:dump_final_repack_without_ligand_pdb")
 
BooleanOptionKey const parser_read_cloud_pdb ("enzdes:parser_read_cloud_pdb")
 

Variables

BooleanOptionKey const enzdes
 
StringOptionKey const checkpoint
 
BooleanOptionKey const enz_score
 
BooleanOptionKey const enz_repack
 
BooleanOptionKey const cst_opt
 
BooleanOptionKey const cst_predock
 
RealOptionKey const trans_magnitude
 
RealOptionKey const rot_magnitude
 
RealOptionKey const dock_trials
 
BooleanOptionKey const cst_min
 
BooleanOptionKey const cst_design
 
IntegerOptionKey const design_min_cycles
 
BooleanOptionKey const make_consensus_mutations
 
BooleanOptionKey const bb_min
 
RealOptionKey const bb_min_allowed_dev
 
RealOptionKey const loop_bb_min_allowed_dev
 
RealOptionKey const minimize_ligand_torsions
 
RealOptionKey const minimize_all_ligand_torsions
 
BooleanOptionKey const chi_min
 
BooleanOptionKey const min_all_jumps
 
BooleanOptionKey const cst_dock
 
BooleanOptionKey const run_ligand_motifs
 
BooleanOptionKey const enz_debug
 
FileOptionKey const cstfile
 
FileOptionKey const enz_loops_file
 
BooleanOptionKey const flexbb_protocol
 
BooleanOptionKey const remodel_protocol
 
BooleanOptionKey const kic_loop_sampling
 
StringOptionKey const dump_loop_samples
 
BooleanOptionKey const fix_catalytic_aa
 
IntegerOptionKey const additional_packing_ligand_rb_confs
 
IntegerOptionKey const ex_catalytic_rot
 
IntegerOptionKey const single_loop_ensemble_size
 
IntegerOptionKey const loop_generator_trials
 
BooleanOptionKey const no_catres_min_in_loopgen
 
RealOptionKey const mc_kt_low
 
RealOptionKey const mc_kt_high
 
RealOptionKey const min_cacb_deviation
 
RealOptionKey const max_bb_deviation
 
RealOptionKey const max_bb_deviation_from_startstruct
 
IntegerOptionKey const remodel_trials
 
BooleanOptionKey const remodel_secmatch
 
BooleanOptionKey const dump_inverse_rotamers
 
RealOptionKey const remodel_aggressiveness
 
RealOptionKey const favor_native_res
 
BooleanOptionKey const detect_design_interface
 
BooleanOptionKey const include_catres_in_interface_detection
 
BooleanOptionKey const arg_sweep_interface
 
RealOptionKey const arg_sweep_cutoff
 
RealOptionKey const cut1
 
RealOptionKey const cut2
 
RealOptionKey const cut3
 
RealOptionKey const cut4
 
RealOptionKey const lig_packer_weight
 
BooleanOptionKey const no_unconstrained_repack
 
RealOptionKey const secmatch_Ecutoff
 
FileOptionKey const change_lig
 
StringOptionKey const process_ligrot_separately
 
BooleanOptionKey const start_from_random_rb_conf
 
RealOptionKey const bb_bump_cutoff
 
RealOptionKey const sc_sc_bump_cutoff
 
BooleanOptionKey const no_packstat_calculation
 
StringOptionKey const compare_native
 
BooleanOptionKey const final_repack_without_ligand
 
BooleanOptionKey const dump_final_repack_without_ligand_pdb
 
BooleanOptionKey const parser_read_cloud_pdb
 

Function Documentation

IntegerOptionKey const basic::options::OptionKeys::enzdes::additional_packing_ligand_rb_confs ( "enzdes:additional_packing_ligand_rb_confs"  )
RealOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_cutoff ( "enzdes:arg_sweep_cutoff"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_interface ( "enzdes:arg_sweep_interface"  )
RealOptionKey const basic::options::OptionKeys::enzdes::bb_bump_cutoff ( "enzdes:bb_bump_cutoff"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::bb_min ( "enzdes:bb_min"  )
RealOptionKey const basic::options::OptionKeys::enzdes::bb_min_allowed_dev ( "enzdes:bb_min_allowed_dev"  )
FileOptionKey const basic::options::OptionKeys::enzdes::change_lig ( "enzdes:change_lig"  )
StringOptionKey const basic::options::OptionKeys::enzdes::checkpoint ( "enzdes:checkpoint"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::chi_min ( "enzdes:chi_min"  )
StringOptionKey const basic::options::OptionKeys::enzdes::compare_native ( "enzdes:compare_native"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_design ( "enzdes:cst_design"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_dock ( "enzdes:cst_dock"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_min ( "enzdes:cst_min"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_opt ( "enzdes:cst_opt"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_predock ( "enzdes:cst_predock"  )
FileOptionKey const basic::options::OptionKeys::enzdes::cstfile ( "enzdes:cstfile"  )
RealOptionKey const basic::options::OptionKeys::enzdes::cut1 ( "enzdes:cut1"  )
RealOptionKey const basic::options::OptionKeys::enzdes::cut2 ( "enzdes:cut2"  )
RealOptionKey const basic::options::OptionKeys::enzdes::cut3 ( "enzdes:cut3"  )
RealOptionKey const basic::options::OptionKeys::enzdes::cut4 ( "enzdes:cut4"  )
IntegerOptionKey const basic::options::OptionKeys::enzdes::design_min_cycles ( "enzdes:design_min_cycles"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::detect_design_interface ( "enzdes:detect_design_interface"  )
RealOptionKey const basic::options::OptionKeys::enzdes::dock_trials ( "enzdes:dock_trials"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_final_repack_without_ligand_pdb ( "enzdes:dump_final_repack_without_ligand_pdb"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_inverse_rotamers ( "enzdes:dump_inverse_rotamers"  )
StringOptionKey const basic::options::OptionKeys::enzdes::dump_loop_samples ( "enzdes:dump_loop_samples"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_debug ( "enzdes:enz_debug"  )
FileOptionKey const basic::options::OptionKeys::enzdes::enz_loops_file ( "enzdes:enz_loops_file"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_repack ( "enzdes:enz_repack"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_score ( "enzdes:enz_score"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::enzdes ( "enzdes"  )
IntegerOptionKey const basic::options::OptionKeys::enzdes::ex_catalytic_rot ( "enzdes:ex_catalytic_rot"  )
RealOptionKey const basic::options::OptionKeys::enzdes::favor_native_res ( "enzdes:favor_native_res"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::final_repack_without_ligand ( "enzdes:final_repack_without_ligand"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::fix_catalytic_aa ( "enzdes:fix_catalytic_aa"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::flexbb_protocol ( "enzdes:flexbb_protocol"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::include_catres_in_interface_detection ( "enzdes:include_catres_in_interface_detection"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::kic_loop_sampling ( "enzdes:kic_loop_sampling"  )
RealOptionKey const basic::options::OptionKeys::enzdes::lig_packer_weight ( "enzdes:lig_packer_weight"  )
RealOptionKey const basic::options::OptionKeys::enzdes::loop_bb_min_allowed_dev ( "enzdes:loop_bb_min_allowed_dev"  )
IntegerOptionKey const basic::options::OptionKeys::enzdes::loop_generator_trials ( "enzdes:loop_generator_trials"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::make_consensus_mutations ( "enzdes:make_consensus_mutations"  )
RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation ( "enzdes:max_bb_deviation"  )
RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation_from_startstruct ( "enzdes:max_bb_deviation_from_startstruct"  )
RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_high ( "enzdes:mc_kt_high"  )
RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_low ( "enzdes:mc_kt_low"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::min_all_jumps ( "enzdes:min_all_jumps"  )
RealOptionKey const basic::options::OptionKeys::enzdes::min_cacb_deviation ( "enzdes:min_cacb_deviation"  )
RealOptionKey const basic::options::OptionKeys::enzdes::minimize_all_ligand_torsions ( "enzdes:minimize_all_ligand_torsions"  )
RealOptionKey const basic::options::OptionKeys::enzdes::minimize_ligand_torsions ( "enzdes:minimize_ligand_torsions"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::no_catres_min_in_loopgen ( "enzdes:no_catres_min_in_loopgen"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::no_packstat_calculation ( "enzdes:no_packstat_calculation"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::no_unconstrained_repack ( "enzdes:no_unconstrained_repack"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::parser_read_cloud_pdb ( "enzdes:parser_read_cloud_pdb"  )
StringOptionKey const basic::options::OptionKeys::enzdes::process_ligrot_separately ( "enzdes:process_ligrot_separately"  )
RealOptionKey const basic::options::OptionKeys::enzdes::remodel_aggressiveness ( "enzdes:remodel_aggressiveness"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_protocol ( "enzdes:remodel_protocol"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_secmatch ( "enzdes:remodel_secmatch"  )
IntegerOptionKey const basic::options::OptionKeys::enzdes::remodel_trials ( "enzdes:remodel_trials"  )
RealOptionKey const basic::options::OptionKeys::enzdes::rot_magnitude ( "enzdes:rot_magnitude"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::run_ligand_motifs ( "enzdes:run_ligand_motifs"  )
RealOptionKey const basic::options::OptionKeys::enzdes::sc_sc_bump_cutoff ( "enzdes:sc_sc_bump_cutoff"  )
RealOptionKey const basic::options::OptionKeys::enzdes::secmatch_Ecutoff ( "enzdes:secmatch_Ecutoff"  )
IntegerOptionKey const basic::options::OptionKeys::enzdes::single_loop_ensemble_size ( "enzdes:single_loop_ensemble_size"  )
BooleanOptionKey const basic::options::OptionKeys::enzdes::start_from_random_rb_conf ( "enzdes:start_from_random_rb_conf"  )
RealOptionKey const basic::options::OptionKeys::enzdes::trans_magnitude ( "enzdes:trans_magnitude"  )

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::enzdes::additional_packing_ligand_rb_confs("enzdes:additional_packing_ligand_rb_confs")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_cutoff("enzdes:arg_sweep_cutoff")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_interface("enzdes:arg_sweep_interface")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_bump_cutoff("enzdes:bb_bump_cutoff")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::bb_min("enzdes:bb_min")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_min_allowed_dev("enzdes:bb_min_allowed_dev")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::enzdes::change_lig("enzdes:change_lig")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::enzdes::checkpoint("enzdes:checkpoint")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::chi_min("enzdes:chi_min")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::enzdes::compare_native("enzdes:compare_native")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_design("enzdes:cst_design")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_dock("enzdes:cst_dock")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_min("enzdes:cst_min")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_opt("enzdes:cst_opt")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_predock("enzdes:cst_predock")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::enzdes::cstfile("enzdes:cstfile")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::cut1("enzdes:cut1")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::cut2("enzdes:cut2")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::cut3("enzdes:cut3")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::cut4("enzdes:cut4")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::enzdes::design_min_cycles("enzdes:design_min_cycles")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::detect_design_interface("enzdes:detect_design_interface")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::dock_trials("enzdes:dock_trials")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_final_repack_without_ligand_pdb("enzdes:dump_final_repack_without_ligand_pdb")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_inverse_rotamers("enzdes:dump_inverse_rotamers")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::enzdes::dump_loop_samples("enzdes:dump_loop_samples")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_debug("enzdes:enz_debug")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::enzdes::enz_loops_file("enzdes:enz_loops_file")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_repack("enzdes:enz_repack")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_score("enzdes:enz_score")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enzdes("enzdes")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::enzdes::ex_catalytic_rot("enzdes:ex_catalytic_rot")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::favor_native_res("enzdes:favor_native_res")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::final_repack_without_ligand("enzdes:final_repack_without_ligand")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::fix_catalytic_aa("enzdes:fix_catalytic_aa")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::flexbb_protocol("enzdes:flexbb_protocol")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::include_catres_in_interface_detection("enzdes:include_catres_in_interface_detection")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::kic_loop_sampling("enzdes:kic_loop_sampling")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::lig_packer_weight("enzdes:lig_packer_weight")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::loop_bb_min_allowed_dev("enzdes:loop_bb_min_allowed_dev")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::enzdes::loop_generator_trials("enzdes:loop_generator_trials")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::make_consensus_mutations("enzdes:make_consensus_mutations")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation("enzdes:max_bb_deviation")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation_from_startstruct("enzdes:max_bb_deviation_from_startstruct")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_high("enzdes:mc_kt_high")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_low("enzdes:mc_kt_low")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::min_all_jumps("enzdes:min_all_jumps")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::min_cacb_deviation("enzdes:min_cacb_deviation")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_all_ligand_torsions("enzdes:minimize_all_ligand_torsions")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_ligand_torsions("enzdes:minimize_ligand_torsions")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_catres_min_in_loopgen("enzdes:no_catres_min_in_loopgen")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_packstat_calculation("enzdes:no_packstat_calculation")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_unconstrained_repack("enzdes:no_unconstrained_repack")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::parser_read_cloud_pdb("enzdes:parser_read_cloud_pdb")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::enzdes::process_ligrot_separately("enzdes:process_ligrot_separately")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::remodel_aggressiveness("enzdes:remodel_aggressiveness")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_protocol("enzdes:remodel_protocol")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_secmatch("enzdes:remodel_secmatch")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::enzdes::remodel_trials("enzdes:remodel_trials")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::rot_magnitude("enzdes:rot_magnitude")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::run_ligand_motifs("enzdes:run_ligand_motifs")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::sc_sc_bump_cutoff("enzdes:sc_sc_bump_cutoff")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::secmatch_Ecutoff("enzdes:secmatch_Ecutoff")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::enzdes::single_loop_ensemble_size("enzdes:single_loop_ensemble_size")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::enzdes::start_from_random_rb_conf("enzdes:start_from_random_rb_conf")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::enzdes::trans_magnitude("enzdes:trans_magnitude")

Referenced by add_rosetta_options_2().