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Variables
basic::options::OptionKeys::pepspec Namespace Reference

Variables

BooleanOptionKey const pepspec
 
StringOptionKey const soft_wts
 
StringOptionKey const cen_wts
 
BooleanOptionKey const binding_score
 
BooleanOptionKey const no_cen
 
BooleanOptionKey const no_cen_rottrials
 
BooleanOptionKey const run_sequential
 
IntegerOptionKey const pep_anchor
 
StringOptionKey const pep_chain
 
IntegerOptionKey const n_peptides
 
IntegerOptionKey const n_build_loop
 
IntegerOptionKey const n_cgrelax_loop
 
IntegerOptionKey const n_dock_loop
 
RealOptionKey const interface_cutoff
 
BooleanOptionKey const use_input_bb
 
BooleanOptionKey const remove_input_bb
 
StringOptionKey const homol_csts
 
RealOptionKey const p_homol_csts
 
BooleanOptionKey const gen_pep_bb_sequential
 
StringOptionKey const input_seq
 
StringOptionKey const ss_type
 
BooleanOptionKey const upweight_interface
 
BooleanOptionKey const calc_sasa
 
BooleanOptionKey const diversify_pep_seqs
 
IntegerOptionKey const diversify_lvl
 
BooleanOptionKey const dump_cg_bb
 
BooleanOptionKey const save_low_pdbs
 
BooleanOptionKey const save_all_pdbs
 
BooleanOptionKey const no_design
 
StringOptionKey const pdb_list
 
StringOptionKey const ref_pdb_list
 
BooleanOptionKey const add_buffer_res
 
StringOptionKey const cg_res_type
 
IntegerOptionKey const native_pep_anchor
 
StringOptionKey const native_pep_chain
 
BooleanOptionKey const native_align
 
BooleanOptionKey const rmsd_analysis
 
StringOptionKey const anchor_type
 
BooleanOptionKey const no_prepack_prot
 
BooleanOptionKey const prep_use_ref_rotamers
 
IntegerOptionKey const n_prepend
 
IntegerOptionKey const n_append
 
RealOptionKey const clash_cutoff
 
RealOptionKey const n_anchor_dock_std_devs
 
RealOptionKey const prep_trans_std_dev
 
RealOptionKey const prep_rot_std_dev
 
BooleanOptionKey const seq_align
 
StringOptionKey const prep_align_prot_to
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::pepspec::add_buffer_res

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::anchor_type
BooleanOptionKey const basic::options::OptionKeys::pepspec::binding_score

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::calc_sasa

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::cen_wts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::cg_res_type
RealOptionKey const basic::options::OptionKeys::pepspec::clash_cutoff
IntegerOptionKey const basic::options::OptionKeys::pepspec::diversify_lvl

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::diversify_pep_seqs

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::dump_cg_bb

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::gen_pep_bb_sequential

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::homol_csts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::input_seq
RealOptionKey const basic::options::OptionKeys::pepspec::interface_cutoff

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::n_anchor_dock_std_devs

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_append
IntegerOptionKey const basic::options::OptionKeys::pepspec::n_build_loop
IntegerOptionKey const basic::options::OptionKeys::pepspec::n_cgrelax_loop
IntegerOptionKey const basic::options::OptionKeys::pepspec::n_dock_loop

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_peptides
IntegerOptionKey const basic::options::OptionKeys::pepspec::n_prepend
BooleanOptionKey const basic::options::OptionKeys::pepspec::native_align

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::native_pep_anchor

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::native_pep_chain

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen_rottrials

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_design

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_prepack_prot

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::p_homol_csts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::pdb_list
IntegerOptionKey const basic::options::OptionKeys::pepspec::pep_anchor

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::pep_chain

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::pepspec

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::prep_align_prot_to

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_rot_std_dev

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_trans_std_dev

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::prep_use_ref_rotamers

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::ref_pdb_list

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::remove_input_bb

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::rmsd_analysis
BooleanOptionKey const basic::options::OptionKeys::pepspec::run_sequential

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::save_all_pdbs
BooleanOptionKey const basic::options::OptionKeys::pepspec::save_low_pdbs
BooleanOptionKey const basic::options::OptionKeys::pepspec::seq_align
StringOptionKey const basic::options::OptionKeys::pepspec::soft_wts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::ss_type

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::upweight_interface

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::use_input_bb

Referenced by add_rosetta_options_11().