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Variables
basic::options::OptionKeys::relax::range Namespace Reference

Variables

BooleanOptionKey const range
 
BooleanOptionKey const set_tm_helical
 
RealOptionKey const kT
 
RealOptionKey const angle_max
 
StringOptionKey const nmoves
 
BooleanOptionKey const spherical_wave
 
BooleanOptionKey const repack_again
 
IntegerOptionKey const cycles
 
IntegerOptionKey const min_cycles
 
BooleanOptionKey const idealize
 
BooleanOptionKey const skip_relax
 

Variable Documentation

RealOptionKey const basic::options::OptionKeys::relax::range::angle_max

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::range::cycles

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::range::idealize

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::range::kT
IntegerOptionKey const basic::options::OptionKeys::relax::range::min_cycles

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::relax::range::nmoves

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::range::range

Referenced by pyrosetta.bindings.pose.PoseResidueAccessor::__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__getitem__(), PyMOL-RosettaServer.Matrix::__init__(), pyrosetta.bindings.pose.PoseResidueAccessor::__iter__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor::__reversed__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__reversed__(), pyrosetta.toolbox.atom_pair_energy::_atom_pair_energy_table(), PyMOL-RosettaServer.PR_PyMOLServer::_color_model(), pyrosetta.PyMOLRosettaServer.PR_PyMOLServer::_color_model(), pyrosetta.toolbox.atom_pair_energy::_reisude_pair_energies(), add_rosetta_options_12(), pyrosetta.distributed.viewer.modules.setHydrogenBonds::apply(), pyrosetta.distributed.viewer.modules.setHydrogens::apply(), auto-DRRAFTER_setup::auto_setup_helices(), demo.D090_Ala_scan::calc_binding_energy(), pyrosetta.toolbox.cleaning::cleanCRYS(), PyMOL_demo::coloring_demo(), pyrosetta.PyMOLRosettaServer::compute_plane_positions(), PyMOL-RosettaServer::compute_plane_positions(), pyrosetta.PyMOLRosettaServer::connect_points(), PyMOL-RosettaServer::connect_points(), pyrosetta.bindings.pose::display_secstruct(), erraser_wrapper::erraser(), erraser_wrapper::erraser_single_res(), auto-DRRAFTER_setup_next_round::figure_out_next_round(), finalize_models::finalize(), erraser_util::find_nearby_res(), mutant_modeler::find_pairs(), DRRAFTER_util::find_pairs(), DRRAFTER::find_pairs(), demo.D030_Fold_tree::fold_tree(), pyrosetta.tests.protocols.indexed_structure_store.test_search::fragment_start_indicies_from_residue_array(), pyrosetta.tests.protocols.indexed_structure_store.test_search::fragments_from_source_residues(), pyrosetta.bindings.homogeneous_transform::from_array(), DRRAFTER::get_coord_csts(), auto-DRRAFTER_setup::get_density_btwn_points(), mutant_modeler.MutantModeler::get_high_res_command_lines(), DRRAFTER_util::get_ints(), mutant_modeler.MutantModeler::get_med_res_command_lines(), mutant_modeler.MutantModeler::get_mut_positions(), DRRAFTER::get_near_residues(), DRRAFTER_util::get_resnum_chain(), auto-DRRAFTER_setup_next_round::get_results(), auto-DRRAFTER_setup_next_round::get_silent_file_subset(), make_templates::getMapFunction(), make_templates::getVectorFunction(), DRRAFTER_util::graph_from_ss(), demo.D060_Folding::guess_disulfides(), pyrosetta.protocols.structure_search.alignment::length_grouped_broadcast_metric(), pyrosetta.protocols.structure_search.alignment::length_grouped_pairwise_metric(), mutant_modeler::list_mutated_BPs(), mutant_modeler::list_NC_BPs(), pyrosetta.PyMOLRosettaServer.PR_UDPServer::listen(), PyMOL-RosettaServer.PR_UDPServer::listen(), relax_starting_structure::main(), options::main(), pyrosetta.PyMOLRosettaServer::make_axis(), PyMOL-RosettaServer::make_axis(), pyrosetta.PyMOLRosettaServer::make_data(), PyMOL-RosettaServer::make_data(), mutant_modeler.MutantModeler::make_high_res_subsets_and_cmd_lines(), submit_jobs::make_job_files_and_submit(), util::make_tag_with_dashes(), DRRAFTER_util::make_tag_with_dashes(), make_templates::makeFile(), DRRAFTER_util::matches(), pyrosetta.mpi::MPIJobDistributor(), pyrosetta.toolbox.mutants::mutate_residue(), mp_ddG::mutate_residue(), demo.D090_Ala_scan::mutate_residue(), demo.D050_Packer_task::packer_task(), erraser_util::parse_option_chain_res_list(), erraser_util::parse_option_int_list(), erraser_util::parse_option_string_list(), DRRAFTER_util::parse_tag(), erraser_util::pdb_slice(), erraser_util::pdb_slice_into_chunks(), pyrosetta.toolbox.extract_coords_pose::pose_coords_as_rows(), pyrosetta.io::pose_from_sequence(), demo.D020_Pose_scoring::pose_scoring(), demo.D010_Pose_structure::pose_structure(), mp_ddG::print_ddG_breakdown(), mp_ddG::print_score_labels_to_file(), pyrosetta.PyMOLRosettaServer.PR_PyMOLServer::process_packet(), PyMOL-RosettaServer.PR_PyMOLServer::process_packet(), numeric::random::RandomGenerator::random_range(), erraser_util::res_wise_rmsd(), DRRAFTER_util::residue_graph_from_ss(), pyrosetta.bindings.energies::residue_onebody_energies_array(), pyrosetta.bindings.energies::residue_pair_energies_array(), pyrosetta.bindings.energies::residue_total_energies_array(), pyrosetta.toolbox.mutants::restrict_non_nbrs_from_repacking(), demo.D060_Folding::sample_folding(), demo.D070_Refinement::sample_refinement(), demo.D080_Loop_modeling::sample_single_loop_modeling(), demo.D090_Ala_scan::scanning(), demo.D090_Ala_scan::scanning_analysis(), pyrosetta.PyMOLRosettaServer::set_spectrum(), PyMOL-RosettaServer::set_spectrum(), pyrosetta.tests.distributed.test_viewer.TestViewer::setUp(), DRRAFTER::setup_job(), drrafter_rna::setup_next_round(), submit_jobs::setup_out_dir(), pyrosetta.PyMOLRosettaServer::start_rosetta_server(), PyMOL-RosettaServer::start_rosetta_server(), numeric::geometry::hashing::SixDOffsetTree::sum_radius(), erraser_wrapper::SWA_rebuild_erraser(), erraser_wrapper::SWA_rebuild_erraser_postproc(), PyMOL_demo::test(), pyrosetta.tests.bindings.core.test_pose.TestPoseIO::test_pose_io(), pyrosetta.tests.bindings.core.test_pose.TestPosesToSilent::test_poses_to_silent(), pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch::test_rep_search(), pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed::test_silent_io(), pyrosetta.tests.numeric.test_alignment.TestAlignment::test_superimpose(), pyrosetta.tests.distributed.test_viewer.TestViewer::test_viewer_with_poses(), and pyrosetta.utility.array::to_structured_array().

BooleanOptionKey const basic::options::OptionKeys::relax::range::repack_again

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::range::set_tm_helical

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::range::skip_relax
BooleanOptionKey const basic::options::OptionKeys::relax::range::spherical_wave

Referenced by add_rosetta_options_12().