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cm.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::cm
 
 basic::options::OptionKeys::cm::sanitize
 
 basic::options::OptionKeys::cm::hybridize
 

Variables

BooleanOptionKey const basic::options::OptionKeys::cm::cm
 
BooleanOptionKey const basic::options::OptionKeys::cm::sanitize::sanitize
 
IntegerOptionKey const basic::options::OptionKeys::cm::sanitize::num_fragments
 
RealOptionKey const basic::options::OptionKeys::cm::sanitize::cst_weight_pair
 
RealOptionKey const basic::options::OptionKeys::cm::sanitize::cst_weight_coord
 
BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only
 
StringOptionKey const basic::options::OptionKeys::cm::aln_format
 
BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains
 
FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues
 
StringOptionKey const basic::options::OptionKeys::cm::loop_mover
 
IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level
 
IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size
 
IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild
 
RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter
 
RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile
 
IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter
 
StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score
 
StringOptionKey const basic::options::OptionKeys::cm::aligner
 
RealOptionKey const basic::options::OptionKeys::cm::min_gap_open
 
RealOptionKey const basic::options::OptionKeys::cm::max_gap_open
 
RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend
 
RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend
 
IntegerOptionKey const basic::options::OptionKeys::cm::nn
 
FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map
 
FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map
 
IntegerVectorOptionKey const basic::options::OptionKeys::cm::seeds
 
IntegerOptionKey const basic::options::OptionKeys::cm::nremain_reset
 
RealVectorOptionKey const basic::options::OptionKeys::cm::quota_per_silent
 
RealOptionKey const basic::options::OptionKeys::cm::similarity_cut
 
RealOptionKey const basic::options::OptionKeys::cm::similarity_limit
 
RealOptionKey const basic::options::OptionKeys::cm::refsimilarity_cut
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::hybridize
 
IntegerVectorOptionKey const basic::options::OptionKeys::cm::hybridize::starting_template
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains_stage2
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::add_non_init_chunks
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_increase_cycles
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_increase_cycles
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2min_increase_cycles
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_probability
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::skip_stage2
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::no_global_frame
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::linmin_only
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::relax
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_weight_aligned
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::max_registry_shift
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_1mer_insertion_weight
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::small_frag_insertion_weight
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::big_frag_insertion_weight
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::auto_frag_insertion_weight
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_1_cycles
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_2_cycles
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_3_cycles
 
IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cycles
 
RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_temperature
 
StringOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cenrot_score
 
BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::include_loop_ss_chunks
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)