Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Namespaces | Variables
basic::options::OptionKeys::cluster Namespace Reference

Namespaces

 energy_based_clustering
 

Variables

BooleanOptionKey const cluster
 
BooleanOptionKey const lite
 
RealOptionKey const input_score_filter
 
RealOptionKey const output_score_filter
 
IntegerVectorOptionKey const exclude_res
 
RealOptionKey const thinout_factor
 
RealOptionKey const radius
 
IntegerOptionKey const limit_cluster_size
 
RealOptionKey const limit_cluster_size_percent
 
RealOptionKey const random_limit_cluster_size_percent
 
IntegerOptionKey const limit_clusters
 
IntegerOptionKey const limit_total_structures
 
IntegerOptionKey const max_total_cluster
 
BooleanOptionKey const gdtmm
 
BooleanOptionKey const skip_align
 
IntegerOptionKey const max_rms_matrix
 
BooleanOptionKey const rna_P
 
BooleanOptionKey const sort_groups_by_energy
 
BooleanOptionKey const sort_groups_by_size
 
BooleanOptionKey const remove_singletons
 
BooleanOptionKey const export_only_low
 
BooleanOptionKey const remove_highest_energy_member
 
BooleanOptionKey const idealize_final_structures
 
IntegerOptionKey const limit_dist_matrix
 
BooleanOptionKey const make_ensemble_cst
 
BooleanOptionKey const hotspot_hash
 
BooleanOptionKey const loops
 
RealOptionKey const population_weight
 
StringOptionKey const template_scores
 
IntegerOptionKey const K_level
 
RealVectorOptionKey const K_radius
 
IntegerVectorOptionKey const K_n_cluster
 
StringVectorOptionKey const K_style
 
IntegerOptionKey const K_n_sub
 
IntegerOptionKey const K_deque_size
 
IntegerOptionKey const K_deque_level
 
BooleanOptionKey const K_redundant
 
BooleanOptionKey const K_not_fit_xyz
 
BooleanOptionKey const K_save_headers
 
RealOptionKey const score_diff_cut
 
BooleanOptionKey const auto_tune
 
BooleanOptionKey const write_centers
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune
BooleanOptionKey const basic::options::OptionKeys::cluster::cluster
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res
BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_level

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz

Referenced by add_rosetta_options_6().

RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers

Referenced by add_rosetta_options_6().

StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::lite

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::loops
BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_rms_matrix

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::population_weight

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::radius
RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::rna_P

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut
BooleanOptionKey const basic::options::OptionKeys::cluster::skip_align

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cluster::template_scores

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::write_centers

Referenced by add_rosetta_options_6().