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Typedefs | Functions
rna_features.cc File Reference
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/rna/RNA_LowResolutionPotential.hh>
#include <core/pose/rna/RNA_BaseDoubletClasses.hh>
#include <core/scoring/rna/RNA_CentroidInfo.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/scoring/rna/data/RNA_DMS_Potential.hh>
#include <core/scoring/rna/data/RNA_DMS_LowResolutionPotential.hh>
#include <core/io/rna/RDAT.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/DOF_ID.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/Stub.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/PDBInfo.fwd.hh>
#include <core/pose/util.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <utility/vector1.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/file/FileName.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/conversions.hh>
#include <numeric/constants.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <numeric/xyz.functions.hh>

Typedefs

using Matrix = numeric::xyzMatrix< core::Real >
 

Functions

void save_feature (vector1< std::string > &feature_names, vector1< core::Real > &feature_vals, Size &feature_counter, std::string const &feature_name, core::Real const feature_val)
 
Size rna_features_from_pose (core::io::rna::RDAT &rdat, pose::Pose &pose)
 
void rhiju_pdbstats ()
 
void * my_main (void *)
 
int main (int argc, char *argv[])
 

Detailed Description

Author
Rhiju, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Typedef Documentation

using Matrix = numeric::xyzMatrix<core::Real>

Function Documentation

int main ( int  argc,
char *  argv[] 
)
void* my_main ( void *  )
void rhiju_pdbstats ( )
Size rna_features_from_pose ( core::io::rna::RDAT &  rdat,
pose::Pose pose 
)
void save_feature ( vector1< std::string > &  feature_names,
vector1< core::Real > &  feature_vals,
Size &  feature_counter,
std::string const &  feature_name,
core::Real const  feature_val 
)

References runtime_assert.

Referenced by rna_features_from_pose().