Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Variables
basic::options::OptionKeys::cm::hybridize Namespace Reference

Variables

BooleanOptionKey const hybridize
 
IntegerVectorOptionKey const starting_template
 
BooleanOptionKey const realign_domains
 
BooleanOptionKey const realign_domains_stage2
 
IntegerOptionKey const add_non_init_chunks
 
RealOptionKey const stage1_increase_cycles
 
RealOptionKey const stage2_increase_cycles
 
RealOptionKey const stage2min_increase_cycles
 
RealOptionKey const stage1_probability
 
BooleanOptionKey const skip_stage2
 
BooleanOptionKey const no_global_frame
 
BooleanOptionKey const linmin_only
 
IntegerOptionKey const relax
 
RealOptionKey const frag_weight_aligned
 
IntegerOptionKey const max_registry_shift
 
RealOptionKey const frag_1mer_insertion_weight
 
RealOptionKey const small_frag_insertion_weight
 
RealOptionKey const big_frag_insertion_weight
 
BooleanOptionKey const auto_frag_insertion_weight
 
IntegerOptionKey const stage1_1_cycles
 
IntegerOptionKey const stage1_2_cycles
 
IntegerOptionKey const stage1_3_cycles
 
IntegerOptionKey const stage1_4_cycles
 
RealOptionKey const stage2_temperature
 
StringOptionKey const stage1_4_cenrot_score
 
BooleanOptionKey const include_loop_ss_chunks
 

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::add_non_init_chunks

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::auto_frag_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::big_frag_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_1mer_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_weight_aligned

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::hybridize

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::include_loop_ss_chunks

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::linmin_only

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::max_registry_shift

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::no_global_frame

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains_stage2

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::relax

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::skip_stage2

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::small_frag_insertion_weight

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_1_cycles

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_2_cycles

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_3_cycles

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cenrot_score

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_increase_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_probability

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_increase_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_temperature

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2min_increase_cycles

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cm::hybridize::starting_template

Referenced by add_rosetta_options_6().